jgi.p|Nanoce1779_2|605949, mRNA_9276 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605949
Unique Name	mRNA_9276
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2298
Alignment location	scaffold_33:161041..163338 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606035
Track	FilteredModels2
ProteinId	605949

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:161041..163338 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605949	gene_9276	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605949	mRNA_9276-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9276	CDS_9276	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:161041..163338+
coding sequence from alignment at scaffold_33:161041..163338+

mRNA sequence

>mRNA_9276 ID=mRNA_9276|Name=jgi.p|Nanoce1779_2|605949|organism=Nannochloropsis oceanica|type=mRNA|length=2298bp
GGGAGGGAGGGATGTCGGACAAGTTGAGGGCGAAGAAGTCATATCCATCC
ATACACATTGTATGAATGTGTATTTATACGACCTTATTTAGTTATATTTA
AAGTTGTAGTCGTATTTATTTATGTATACATAGTCATGACTAATATTTAT
ACATACAAAAACACGTATGTGTGCATTCATTAATTGACACACACACCCCT
AGGTGACGGTGATGTGCCTGCCCGCGCAGTTCCTGACGGGTGTCTTCGGC
ATGAATGTACGTGCTGGGGGTGGTCAAGGTAGTCGTGGAGGTGGGCGTGC
CAGAGGGTGCTGGTGATGTTCGTCGAGATGGGCGTGGGAGCGAAGAGGCT
GCCACGGCCGGCTTGACTGTCGGCTTCAATGTGGGCCCGCTCTCTCGGCT
TCAACCCCGTGGAGGCTTTCCTTGCTTCTTCCCTTGGCGATTTCCCTCTC
CTACCTCCATTCCTCCTTTCTCCTTTTCCTTCCTCTTGCAACGCAGATTC
GGTCTCTGCTCCGAACCCTCTTGTCCTCTATATACCTTTATCCTGTCCTC
CATTTCCTCCCTTGAACCCCAATCCCTACCCATTGACTGCGTGTGGAACG
CGTCCCCCCAAACAATCCCTGATCAAACCCCAATCAAATTCCAATCAATC
CCATTCAAACCCTAATCAATCCCTTATCACTAATCACCAATCAATTCCTG
ATCATCCCTTATCAATCCTACTGACTGCAGTTCGAGCACTTCCCTCTACT
CAAGTCCCCGGATGGCTTCCTCATCTTCTGGCTCATGACGGGCAGCGCCA
TCGTCGTCATCATGGTTGTCTTCAGGCTCAAGAGCTGGATGTAGAAGTAG
GGGAAGGAAATCAATCAAGCATTTATTTAAAAAAAATAGAAACTGAATGA
ACCGAGGAATACATTTCGGAGAAAGGAGATGCCGTGGGAATTCAGGAAGG
CACAGACGAAATTACCCAGATTTTGAAGCTCAAATTCTCATGCATGGAGA
TAACTTGATTGTGAGGAAACGTCTGGTGTGCTCGTGTGGGTGGGGAGGGT
GTGTGTGCATGGAGTGTGTACATAAGGAACATCAGTAAGAAATTTGCTGT
TCGGCTGGAGTCAGGATATGGGATGGACAAATAAGCAGGGATAGATATGT
GTATCGAGGTGTGTAGTGGAAACACCCTCTTATTTTTGGGCGGAGGTGAC
GATGGTGATGCTGAGGGAGGGGGGAAACGGGTGGGAGTGAAAGAGGGGCA
TAAATGTGTGTCTGCGCTAAAAAAGTTAATTAAAACTAGCGAATTGATGA
TGGATATGTGGGTCTCAGTGAGTCTCTGTGGTCCTCGGTGAGTCTCTTAT
GGCCTTTTACCAGTCCCTTGATGCGATTGTGTGTTTATCATGAGTTTACG
ATCCTGAGCAAGCCGGCTTTGGAGCTGTTCTTTCTTCCGAACGGCGGGAG
GAGAGGCACATGCATACCTGACTTCCGCATGGAGGAGGGCAAACTGTCTA
CAGGACAATTCCTTGCGTTGCCCAGTCGCGTGGAGACATCGCATACCCCT
TTTACAAATGTCTGTGGGCTTGGTTGCTGCAAAGGCTGCTTGGCCAAGTT
TATCGCATCTGCTGACGCGCGTCTTCCGGGCCTTTGGCTTTTTCTTCTTG
GATGCTTCCATCACTGTCAGTATCACAGCCAGAGCTCGCACATGTACTCA
CGACTCACATTCACTTTTTCACCCTGACCTTGTATAGGTGTCTGCAGAGT
GCTTTGTCTCATCCTCTGCCTTGTTTGTGCCTGGTCTCATCGGTCACAGG
CAAAGTTTTTCCTTGAGTGCAGCTCTGCTGCCCCAGACTTCAATACCCCC
AACCCAGCCATAGCCAATATCAGGTGCCTCTAGGAGGGCCAGAACTACCC
CACGCCCGGCAATCCTGCCATAATACTACGCCCCTAAACTGCTCACATAC
AATCGAGTGCCTTAGGTAGCTTCGACCGGCGTCAAAAATGCGCCGGTCCT
TGCCGGAAGGCGTAGAAGACGTGCAAGATGCCGCTGCCTCCTCCTCGGAT
CCTGATGCAGCCGCCCGTGGGGTGGTGCCGGTGAACAACGTGACGCTCAT
GATCTCAAGACGGGCTGGACGCTTGAACTCGTTGTCAGACGATGAAGACG
ATGACAATGAGGACCAGTTGACGCTGGAGGAGGAGCAAGCCACGGCGGCA
GCAGCAGCAGCAGCAGCAACAGGAGGAGGACCAACAGCAGCAACAGCAGC
AGCAGCTGGAGTCAGGACAGCGGTGGAAGGATCTAATGAGAGGGTAGA

protein sequence of jgi.p|Nanoce1779_2|605949

>mRNA_9276-protein ID=mRNA_9276-protein|Name=jgi.p|Nanoce1779_2|605949|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MWARSLGFNPVEAFLASSLGDFPLLPPFLLSPFPSSCNADSVSAPNPLVL
YIPLSCPPFPPLNPNPYPLTACGTRPPKQSLIKPQSNSNQSHSNPNQSLI
TNHQSIPDHPLSILLTAVRALPSTQVPGWLPHLLAHDGQRHRRHHGCLQA
QELDVEVGEGNQSSIYLKKIETE*

mRNA from alignment at scaffold_33:161041..163338+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9276 ID=mRNA_9276|Name=jgi.p|Nanoce1779_2|605949|organism=Nannochloropsis oceanica|type=mRNA|length=2298bp|location=Sequence derived from alignment at scaffold_33:161041..163338+ (Nannochloropsis oceanica)
GGGAGGGAGGGATGTCGGACAAGTTGAGGGCGAAGAAGTCATATCCATCC
ATACACATTGTATGAATGTGTATTTATACGACCTTATTTAGTTATATTTA
AAGTTGTAGTCGTATTTATTTATGTATACATAGTCATGACTAATATTTAT
ACATACAAAAACACGTATGTGTGCATTCATTAATTGACACACACACCCCT
AGGTGACGGTGATGTGCCTGCCCGCGCAGTTCCTGACGGGTGTCTTCGGC
ATGAATGTACGTGCTGGGGGTGGTCAAGGTAGTCGTGGAGGTGGGCGTGC
CAGAGGGTGCTGGTGATGTTCGTCGAGATGGGCGTGGGAGCGAAGAGGCT
GCCACGGCCGGCTTGACTGTCGGCTTCAATGTGGGCCCGCTCTCTCGGCT
TCAACCCCGTGGAGGCTTTCCTTGCTTCTTCCCTTGGCGATTTCCCTCTC
CTACCTCCATTCCTCCTTTCTCCTTTTCCTTCCTCTTGCAACGCAGATTC
GGTCTCTGCTCCGAACCCTCTTGTCCTCTATATACCTTTATCCTGTCCTC
CATTTCCTCCCTTGAACCCCAATCCCTACCCATTGACTGCGTGTGGAACG
CGTCCCCCCAAACAATCCCTGATCAAACCCCAATCAAATTCCAATCAATC
CCATTCAAACCCTAATCAATCCCTTATCACTAATCACCAATCAATTCCTG
ATCATCCCTTATCAATCCTACTGACTGCAGTTCGAGCACTTCCCTCTACT
CAAGTCCCCGGATGGCTTCCTCATCTTCTGGCTCATGACGGGCAGCGCCA
TCGTCGTCATCATGGTTGTCTTCAGGCTCAAGAGCTGGATGTAGAAGTAG
GGGAAGGAAATCAATCAAGCATTTATTTAAAAAAAATAGAAACTGAATGA
ACCGAGGAATACATTTCGGAGAAAGGAGATGCCGTGGGAATTCAGGAAGG
CACAGACGAAATTACCCAGATTTTGAAGCTCAAATTCTCATGCATGGAGA
TAACTTGATTGTGAGGAAACGTCTGGTGTGCTCGTGTGGGTGGGGAGGGT
GTGTGTGCATGGAGTGTGTACATAAGGAACATCAGTAAGAAATTTGCTGT
TCGGCTGGAGTCAGGATATGGGATGGACAAATAAGCAGGGATAGATATGT
GTATCGAGGTGTGTAGTGGAAACACCCTCTTATTTTTGGGCGGAGGTGAC
GATGGTGATGCTGAGGGAGGGGGGAAACGGGTGGGAGTGAAAGAGGGGCA
TAAATGTGTGTCTGCGCTAAAAAAGTTAATTAAAACTAGCGAATTGATGA
TGGATATGTGGGTCTCAGTGAGTCTCTGTGGTCCTCGGTGAGTCTCTTAT
GGCCTTTTACCAGTCCCTTGATGCGATTGTGTGTTTATCATGAGTTTACG
ATCCTGAGCAAGCCGGCTTTGGAGCTGTTCTTTCTTCCGAACGGCGGGAG
GAGAGGCACATGCATACCTGACTTCCGCATGGAGGAGGGCAAACTGTCTA
CAGGACAATTCCTTGCGTTGCCCAGTCGCGTGGAGACATCGCATACCCCT
TTTACAAATGTCTGTGGGCTTGGTTGCTGCAAAGGCTGCTTGGCCAAGTT
TATCGCATCTGCTGACGCGCGTCTTCCGGGCCTTTGGCTTTTTCTTCTTG
GATGCTTCCATCACTGTCAGTATCACAGCCAGAGCTCGCACATGTACTCA
CGACTCACATTCACTTTTTCACCCTGACCTTGTATAGGTGTCTGCAGAGT
GCTTTGTCTCATCCTCTGCCTTGTTTGTGCCTGGTCTCATCGGTCACAGG
CAAAGTTTTTCCTTGAGTGCAGCTCTGCTGCCCCAGACTTCAATACCCCC
AACCCAGCCATAGCCAATATCAGGTGCCTCTAGGAGGGCCAGAACTACCC
CACGCCCGGCAATCCTGCCATAATACTACGCCCCTAAACTGCTCACATAC
AATCGAGTGCCTTAGGTAGCTTCGACCGGCGTCAAAAATGCGCCGGTCCT
TGCCGGAAGGCGTAGAAGACGTGCAAGATGCCGCTGCCTCCTCCTCGGAT
CCTGATGCAGCCGCCCGTGGGGTGGTGCCGGTGAACAACGTGACGCTCAT
GATCTCAAGACGGGCTGGACGCTTGAACTCGTTGTCAGACGATGAAGACG
ATGACAATGAGGACCAGTTGACGCTGGAGGAGGAGCAAGCCACGGCGGCA
GCAGCAGCAGCAGCAGCAACAGGAGGAGGACCAACAGCAGCAACAGCAGC
AGCAGCTGGAGTCAGGACAGCGGTGGAAGGATCTAATGAGAGGGTAGA

Coding sequence (CDS) from alignment at scaffold_33:161041..163338+

>mRNA_9276 ID=mRNA_9276|Name=jgi.p|Nanoce1779_2|605949|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_33:161041..163338+ (Nannochloropsis oceanica)
ATGTGGGCCCGCTCTCTCGGCTTCAACCCCGTGGAGGCTTTCCTTGCTTC
TTCCCTTGGCGATTTCCCTCTCCTACCTCCATTCCTCCTTTCTCCTTTTC
CTTCCTCTTGCAACGCAGATTCGGTCTCTGCTCCGAACCCTCTTGTCCTC
TATATACCTTTATCCTGTCCTCCATTTCCTCCCTTGAACCCCAATCCCTA
CCCATTGACTGCGTGTGGAACGCGTCCCCCCAAACAATCCCTGATCAAAC
CCCAATCAAATTCCAATCAATCCCATTCAAACCCTAATCAATCCCTTATC
ACTAATCACCAATCAATTCCTGATCATCCCTTATCAATCCTACTGACTGC
AGTTCGAGCACTTCCCTCTACTCAAGTCCCCGGATGGCTTCCTCATCTTC
TGGCTCATGACGGGCAGCGCCATCGTCGTCATCATGGTTGTCTTCAGGCT
CAAGAGCTGGATGTAGAAGTAGGGGAAGGAAATCAATCAAGCATTTATTT
AAAAAAAATAGAAACTGAATGA

Synonyms

Publications