jgi.p|Nanoce1779_2|605935, mRNA_9273 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605935
Unique NamemRNA_9273
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1244
Alignment locationscaffold_33:150793..152301 +

Link to JBrowse

Properties
Property NameValue
TranscriptId606021
TrackFilteredModels2
ProteinId605935
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:150793..152301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605935gene_9273Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605935mRNA_9273-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9273CDS_9273Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9273 ID=mRNA_9273|Name=jgi.p|Nanoce1779_2|605935|organism=Nannochloropsis oceanica|type=mRNA|length=1244bp
ACAGCCAGCCCACAACAACCGCAATACTTAGGATACCACACCAGTGTCTG
AATCGCTCAGAGCCTTTACTTTCTGTCCATCAAACCAAACCCATCGAGGA
ACAGCAGGGCAACAACACCCACACGACACCACCATGGACACGGAGGAAGC
AGCGCCTGTGCCCTCGACGGTGGTGCAAGGAGGGGCCAGGAAGATGTCGC
GCTTTGGTGCTGTCTCCTCCCGGCGCTGGGCCGATAGCGACGACGACGAG
ACCCAAAATGAAGGGGGTTCGATGAAGGGGTTAGAAGAGAGCGATGACGA
TGACGACATTTCCTCAACGTCCTCCTCTTCATCCTCGGACAACGAGGACG
AGGATTCGAATAAGGCGGCAGGGGGCATGCCTTGTTTCCCGTCCAACATC
TCCTCCGCCCCTGAGGCCCCGGCTCTCAGCAGTAAGGGGGCAGCAACGGC
GACTACAGTCATGCGACGGCCCCTGACCAAGAAGGAGCGACAGGAACAGA
AGAAGAAGGAACTGGAGGAGCTGGACGACCTTCTCGGGGCCTTTGGCTTG
GAGAGTGGGTCACCATCCCCCACCACGGAGAAGGAGGAGGAGGACCCCGT
GTCGTCGTCGACCGACACCTCCCCCATCAAGGAGAGCAGGGCTATGGAGA
GGGAACATGAGGCCCAGGGCCCCGGGAAAGACGGGAACGATGAGGGCAAG
AAGGATAGGGATAAGAAAAAGAAAAAGAAGAAGAAGAAACCGGCTGCCAC
GGGCGGAAAGGCCGACGACGAGACCGAGCCCTCGGCCACAGCCATGACAC
CGGAGGAGGTGGCGGCGCGGCTCAAGATTAAAAAGGCAGCAGCCTTGAAA
AAGAAGGGGCCATCGCGCACCTCGGCGGCAGCAGCCGTTGCAGTAGCAGC
GGCTGCAGGGGTGGGAGGAAAGAAGCGGAAGGATAAAAAGGGTTACTACA
ACGAGATGCCGACCCGATGAGCGATGCTGAGACGACACCTTGGTGTGACG
ACAGTTAGGCCGCGTGCCATGTGGGCGAGGATACACAACAGTACTTCTGT
GTTTGTCGCAGTAGGCAGAGAGTAGAAAGCATCCAGACTCGACCATGGGG
GACGGTGGGCGTTGTGGTAGGCGAGATTGCTCCCTCGAGGATGAGAGAGG
GAGCGGCGAGAAATGAATAGGGAAATAGAGACAGGTTCTAGATGAAACTA
AAGAAATGTGACAAGAAGTCAAGAGCGGGAGGCTGGGCTAGGGC
back to top

protein sequence of jgi.p|Nanoce1779_2|605935

>mRNA_9273-protein ID=mRNA_9273-protein|Name=jgi.p|Nanoce1779_2|605935|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MDTEEAAPVPSTVVQGGARKMSRFGAVSSRRWADSDDDETQNEGGSMKGL
EESDDDDDISSTSSSSSSDNEDEDSNKAAGGMPCFPSNISSAPEAPALSS
KGAATATTVMRRPLTKKERQEQKKKELEELDDLLGAFGLESGSPSPTTEK
EEEDPVSSSTDTSPIKESRAMEREHEAQGPGKDGNDEGKKDRDKKKKKKK
KKPAATGGKADDETEPSATAMTPEEVAARLKIKKAAALKKKGPSRTSAAA
AVAVAAAAGVGGKKRKDKKGYYNEMPTR*
back to top

mRNA from alignment at scaffold_33:150793..152301+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9273 ID=mRNA_9273|Name=jgi.p|Nanoce1779_2|605935|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp|location=Sequence derived from alignment at scaffold_33:150793..152301+ (Nannochloropsis oceanica)
ACAGCCAGCCCACAACAACCGCAATACTTAGGATACCACACCAGTGTCTG
AATCGCTCAGAGCCTTTACTTTCTGTCCATCAAACCAAACCCATCGAGGA
ACAGCAGGGCAACAACACCCACACGACACCACCATGGACACGGAGGAAGC
AGCGCCTGTGCCCTCGACGGTGGTGCAAGGAGGGGCCAGGAAGATGTCGC
GCTTTGGTGCTGTCTCCTCCCGGTACGTAGCATGCAGCAGTCGGAAGCGG
GTCAGGATTGCTTAGCTTGATCCAAGGTGCAATCTCTCCTCACGACGACT
AGCGTACTATTCTCTACCCTACTTACTCCTTACCCTTTTCCTCGTAGGCG
CTGGGCCGATAGCGACGACGACGAGACCCAAAATGAAGGGGGTTCGATGA
AGGGGTTAGAAGAGGTGCGTACCTGTAAAACAATATTCTGGGTCACTACA
ATTTGCGTCCCCCTCTCGCCCAAGTGGCAGATATTCCAAGTGTCTACATG
GAATTTATTATCCATCTCCATCCCCTCAACTCCACAAATGCCGCCCGTGC
ACAGAGCGATGACGATGACGACATTTCCTCAACGTCCTCCTCTTCATCCT
CGGACAACGAGGACGAGGATTCGAATAAGGCGGCAGGGGGCATGCCTTGT
TTCCCGTCCAACATCTCCTCCGCCCCTGAGGCCCCGGCTCTCAGCAGTAA
GGGGGCAGCAACGGCGACTACAGTCATGCGACGGCCCCTGACCAAGAAGG
AGCGACAGGAACAGAAGAAGAAGGAACTGGAGGAGCTGGACGACCTTCTC
GGGGCCTTTGGCTTGGAGAGTGGGTCACCATCCCCCACCACGGAGAAGGA
GGAGGAGGACCCCGTGTCGTCGTCGACCGACACCTCCCCCATCAAGGAGA
GCAGGGCTATGGAGAGGGAACATGAGGCCCAGGGCCCCGGGAAAGACGGG
AACGATGAGGGCAAGAAGGATAGGGATAAGAAAAAGAAAAAGAAGAAGAA
GAAACCGGCTGCCACGGGCGGAAAGGCCGACGACGAGACCGAGCCCTCGG
CCACAGCCATGACACCGGAGGAGGTGGCGGCGCGGCTCAAGATTAAAAAG
GCAGCAGCCTTGAAAAAGAAGGGGCCATCGCGCACCTCGGCGGCAGCAGC
CGTTGCAGTAGCAGCGGCTGCAGGGGTGGGAGGAAAGAAGCGGAAGGATA
AAAAGGGTTACTACAACGAGATGCCGACCCGATGAGCGATGCTGAGACGA
CACCTTGGTGTGACGACAGTTAGGCCGCGTGCCATGTGGGCGAGGATACA
CAACAGTACTTCTGTGTTTGTCGCAGTAGGCAGAGAGTAGAAAGCATCCA
GACTCGACCATGGGGGACGGTGGGCGTTGTGGTAGGCGAGATTGCTCCCT
CGAGGATGAGAGAGGGAGCGGCGAGAAATGAATAGGGAAATAGAGACAGG
TTCTAGATGAAACTAAAGAAATGTGACAAGAAGTCAAGAGCGGGAGGCTG
GGCTAGGGC
back to top

Coding sequence (CDS) from alignment at scaffold_33:150793..152301+

>mRNA_9273 ID=mRNA_9273|Name=jgi.p|Nanoce1779_2|605935|organism=Nannochloropsis oceanica|type=CDS|length=2511bp|location=Sequence derived from alignment at scaffold_33:150793..152301+ (Nannochloropsis oceanica)
ATGGACACGGAGGAAGCAGCGCCTGTGCCCTCGACGGTGGTGCAAGGAGG
GGCCAGGAAGATGTCGCGCTTTGGTGCTGTCTCCTCCCGGCGCTGGGCCG
ATAGCGACGACGACGAGACCCAAAATGAAGGGGGTTCGATGAAGGGGTTA
GAAGAGAGCGATGACGATGACGACATTTCCTCAACGTCCTCCTCTTCATC
CTCGGACAACGAGGACGAGGATTCGAATAAGGCGGCAGGGGGCATGCCTT
GTTTCCCGTCCAACATCTCCTCCGCCCCTGAGGCCCCGGCTCTCAGCAGT
AAGGGGGCAGCAACGGCGACTACAGTCATGCGACGGCCCCTGACCAAGAA
GGAGCGACAGGAACAGAAGAAGAAGGAACTGGAGGAGCTGGACGACCTTC
TCGGGGCCTTTGGCTTGGAGAGTGGGTCACCATCCCCCACCACGGAGAAG
GAGGAGGAGGACCCCGTGTCGTCGTCGACCGACACCTCCCCCATCAAGGA
GAGCAGGGCTATGGAGAGGGAACATGAGGCCCAGGGCCCCGGGAAAGACG
GGAACGATGAGGGCAAGAAGGATAGGGATAAGAAAAAGAAAAAGAAGAAG
AAGAAACCGGCTGCCACGGGCGGAAAGGCCGACGACGAGACCGAGCCCTC
GGCCACAGCCATGACACCGGAGGAGGTGGCGGCGCGGCTCAAGATTAAAA
AGGCAGCAGCCTTGAAAAAGAAGGGGCCATCGCGCACCTCGGCGGCAGCA
GCCGTTGCAGTAGCAGCGGCTGCAGGGGTGGGAGGAAAGAAGCGGAAGGA
TAAAAAGGGTTACTACAACGAGATGCCGACCCGATGAATGGACACGGAGG
AAGCAGCGCCTGTGCCCTCGACGGTGGTGCAAGGAGGGGCCAGGAAGATG
TCGCGCTTTGGTGCTGTCTCCTCCCGGCGCTGGGCCGATAGCGACGACGA
CGAGACCCAAAATGAAGGGGGTTCGATGAAGGGGTTAGAAGAGAGCGATG
ACGATGACGACATTTCCTCAACGTCCTCCTCTTCATCCTCGGACAACGAG
GACGAGGATTCGAATAAGGCGGCAGGGGGCATGCCTTGTTTCCCGTCCAA
CATCTCCTCCGCCCCTGAGGCCCCGGCTCTCAGCAGTAAGGGGGCAGCAA
CGGCGACTACAGTCATGCGACGGCCCCTGACCAAGAAGGAGCGACAGGAA
CAGAAGAAGAAGGAACTGGAGGAGCTGGACGACCTTCTCGGGGCCTTTGG
CTTGGAGAGTGGGTCACCATCCCCCACCACGGAGAAGGAGGAGGAGGACC
CCGTGTCGTCGTCGACCGACACCTCCCCCATCAAGGAGAGCAGGGCTATG
GAGAGGGAACATGAGGCCCAGGGCCCCGGGAAAGACGGGAACGATGAGGG
CAAGAAGGATAGGGATAAGAAAAAGAAAAAGAAGAAGAAGAAACCGGCTG
CCACGGGCGGAAAGGCCGACGACGAGACCGAGCCCTCGGCCACAGCCATG
ACACCGGAGGAGGTGGCGGCGCGGCTCAAGATTAAAAAGGCAGCAGCCTT
GAAAAAGAAGGGGCCATCGCGCACCTCGGCGGCAGCAGCCGTTGCAGTAG
CAGCGGCTGCAGGGGTGGGAGGAAAGAAGCGGAAGGATAAAAAGGGTTAC
TACAACGAGATGCCGACCCGATGAATGGACACGGAGGAAGCAGCGCCTGT
GCCCTCGACGGTGGTGCAAGGAGGGGCCAGGAAGATGTCGCGCTTTGGTG
CTGTCTCCTCCCGGCGCTGGGCCGATAGCGACGACGACGAGACCCAAAAT
GAAGGGGGTTCGATGAAGGGGTTAGAAGAGAGCGATGACGATGACGACAT
TTCCTCAACGTCCTCCTCTTCATCCTCGGACAACGAGGACGAGGATTCGA
ATAAGGCGGCAGGGGGCATGCCTTGTTTCCCGTCCAACATCTCCTCCGCC
CCTGAGGCCCCGGCTCTCAGCAGTAAGGGGGCAGCAACGGCGACTACAGT
CATGCGACGGCCCCTGACCAAGAAGGAGCGACAGGAACAGAAGAAGAAGG
AACTGGAGGAGCTGGACGACCTTCTCGGGGCCTTTGGCTTGGAGAGTGGG
TCACCATCCCCCACCACGGAGAAGGAGGAGGAGGACCCCGTGTCGTCGTC
GACCGACACCTCCCCCATCAAGGAGAGCAGGGCTATGGAGAGGGAACATG
AGGCCCAGGGCCCCGGGAAAGACGGGAACGATGAGGGCAAGAAGGATAGG
GATAAGAAAAAGAAAAAGAAGAAGAAGAAACCGGCTGCCACGGGCGGAAA
GGCCGACGACGAGACCGAGCCCTCGGCCACAGCCATGACACCGGAGGAGG
TGGCGGCGCGGCTCAAGATTAAAAAGGCAGCAGCCTTGAAAAAGAAGGGG
CCATCGCGCACCTCGGCGGCAGCAGCCGTTGCAGTAGCAGCGGCTGCAGG
GGTGGGAGGAAAGAAGCGGAAGGATAAAAAGGGTTACTACAACGAGATGC
CGACCCGATGA
back to top
Synonyms
Publications