jgi.p|Nanoce1779_2|605932, mRNA_9272 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605932
Unique NamemRNA_9272
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1697
Alignment locationscaffold_33:148796..150492 -

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Properties
Property NameValue
TranscriptId606018
TrackFilteredModels2
ProteinId605932
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:148796..150492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605932gene_9272Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605932mRNA_9272-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9272CDS_9272Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9272 ID=mRNA_9272|Name=jgi.p|Nanoce1779_2|605932|organism=Nannochloropsis oceanica|type=mRNA|length=1697bp
AGCCCCCACATATCACAGTAAAACAGCACATGTGGGCACTCATAGCCACA
TTGCTGACTTATTGGCGAGTATTTTTCTACTTTTGGCGTTCAAGCGGCGA
CTTTGAGGGCTGTCCGTTTCTGAAGCGCGAGCAAGACTTGCCCGCCAAGG
TGCACGTCTATGGCCTCTGGCTCGACCTGTACCTGTGGGACCGACCGCAT
TACCGGGCGCCAACCTACCGTCATGACCTCTTGGCGAATCTGTGCAACGT
GGCGGTGCCGGGAACGGGCCTCCCCTTGAGCTTTTTCTGCGTAGCCAAGC
CCTTAGCCTACCTGTTCTTCACCCTTCTGTACCCGGTGGTGGCCTTCCTG
GGGGCGGTGAATGTGGCCCGCACGGCGCCAAAGTCCCAGGGCAAGTACGC
GGCTTTGACCGAGGCCTTTCGGGAGCATTTATTGACACCTGAGGATTGGT
TTAATTTCTGGCGGCTCAACTCCCGCATCGCGGCCTACCATGAGCTGCTC
ACGCACAGCCCTGGCTACGCGCAGGAAGACAAATGGACCTTTTTGATGGA
CGGGGACCGGCTGGGTGTGCCCGTCTCGCCCGTGCTCAAGACGGCAAGCA
TTGTGGTCAAGAACAAAAATGAGGAGGGTGGCTTGGGCATCTACTTTTAC
AAAAATGCACTGGCCGGCGGGGACTGGATCATCCAAGAACGTCTCCAAAA
CTCGGACTTTCTCCGCGAGCACCTCCTCCCGCCCAACGCCCCCCTCTCCA
CCCTCCGCGTCATCACCGCCTCCCGAGGCGGCCTCACACCCGACGATCCC
CGTGTGGGCCGGCCCGCCACCGACGAGGGCTTTGCCAACTTGCCCGCCAA
CCACATCGAGGCGCTCTCCTGTGTCTTCAGGGCAGGGCGAACAGGCGCCG
CCACGGACCACTCCTCCATCCTCTTCGATGTGGATGTGACGACCGGCCTG
ATATGTGAAGGCTCCATCAACGCCCACTGGTACGAGCTGGGTGTGGGGAA
GCCCTTCCGCACGGCGTGGCGGTCCACCTACACCACAAACACGCACCCCG
ACGCGCCTGGCCTGGTGGTGACGGGGCGGCACATCCACGCGGACATGGCG
GCCTTGCGCGCTCTTGTCTGCCGGGCCCACTTCTTGATGCTGCCTGACGT
GCCTTTCGTGGGATGGGACGTGGCGCTCACTAGCACGGGGGAGTTCTTGT
TGGAGGTGAATTTGTCGTGCAACTTCTTCAGGGGCTCGTTCGAGAAGCCT
CGGTACTTCGCTTTCTGTCGCGACTACCTGGTTCAGCTGCAGAAGGTGCG
GCGGCAGGCAGAGGGGGGGGAGAAGAAGGAGAGATGAATCAAGGGGACAG
GAAAGTCTTGCTTCTCGTAGACTGACACGTATGACTACAGTCTCGAGAGG
TGGGCCAGAGGCACGTGTACCGGCCGCTTGTGAGCTCTGTGCCACCTGAT
GGACACACGCCCGTAGAGACTGAGCCGCGTAAGGCGGCGAGCGCACTCCA
CTCAAAGCACCAGTAAAGTGGAACAACAGCGGAAGCACGACTCGCGAAGT
AGTAAGAGAGGAAGGACTGCTTAAGACTCCAAAAGAAATAACTGTCTGAC
AGCTTCCCTCCTCCGGCACCATGCATGACAGGTTACCTGTGTCCCTCCTG
CAGCGGGGAATAAACAACACAAATCAATCAATCAAACGATCATTTTT
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protein sequence of jgi.p|Nanoce1779_2|605932

>mRNA_9272-protein ID=mRNA_9272-protein|Name=jgi.p|Nanoce1779_2|605932|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MWALIATLLTYWRVFFYFWRSSGDFEGCPFLKREQDLPAKVHVYGLWLDL
YLWDRPHYRAPTYRHDLLANLCNVAVPGTGLPLSFFCVAKPLAYLFFTLL
YPVVAFLGAVNVARTAPKSQGKYAALTEAFREHLLTPEDWFNFWRLNSRI
AAYHELLTHSPGYAQEDKWTFLMDGDRLGVPVSPVLKTASIVVKNKNEEG
GLGIYFYKNALAGGDWIIQERLQNSDFLREHLLPPNAPLSTLRVITASRG
GLTPDDPRVGRPATDEGFANLPANHIEALSCVFRAGRTGAATDHSSILFD
VDVTTGLICEGSINAHWYELGVGKPFRTAWRSTYTTNTHPDAPGLVVTGR
HIHADMAALRALVCRAHFLMLPDVPFVGWDVALTSTGEFLLEVNLSCNFF
RGSFEKPRYFAFCRDYLVQLQKVRRQAEGGEKKER*
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mRNA from alignment at scaffold_33:148796..150492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9272 ID=mRNA_9272|Name=jgi.p|Nanoce1779_2|605932|organism=Nannochloropsis oceanica|type=mRNA|length=1697bp|location=Sequence derived from alignment at scaffold_33:148796..150492- (Nannochloropsis oceanica)
AGCCCCCACATATCACAGTAAAACAGCACATGTGGGCACTCATAGCCACA
TTGCTGACTTATTGGCGAGTATTTTTCTACTTTTGGCGTTCAAGCGGCGA
CTTTGAGGGCTGTCCGTTTCTGAAGCGCGAGCAAGACTTGCCCGCCAAGG
TGCACGTCTATGGCCTCTGGCTCGACCTGTACCTGTGGGACCGACCGCAT
TACCGGGCGCCAACCTACCGTCATGACCTCTTGGCGAATCTGTGCAACGT
GGCGGTGCCGGGAACGGGCCTCCCCTTGAGCTTTTTCTGCGTAGCCAAGC
CCTTAGCCTACCTGTTCTTCACCCTTCTGTACCCGGTGGTGGCCTTCCTG
GGGGCGGTGAATGTGGCCCGCACGGCGCCAAAGTCCCAGGGCAAGTACGC
GGCTTTGACCGAGGCCTTTCGGGAGCATTTATTGACACCTGAGGATTGGT
TTAATTTCTGGCGGCTCAACTCCCGCATCGCGGCCTACCATGAGCTGCTC
ACGCACAGCCCTGGCTACGCGCAGGAAGACAAATGGACCTTTTTGATGGA
CGGGGACCGGCTGGGTGTGCCCGTCTCGCCCGTGCTCAAGACGGCAAGCA
TTGTGGTCAAGAACAAAAATGAGGAGGGTGGCTTGGGCATCTACTTTTAC
AAAAATGCACTGGCCGGCGGGGACTGGATCATCCAAGAACGTCTCCAAAA
CTCGGACTTTCTCCGCGAGCACCTCCTCCCGCCCAACGCCCCCCTCTCCA
CCCTCCGCGTCATCACCGCCTCCCGAGGCGGCCTCACACCCGACGATCCC
CGTGTGGGCCGGCCCGCCACCGACGAGGGCTTTGCCAACTTGCCCGCCAA
CCACATCGAGGCGCTCTCCTGTGTCTTCAGGGCAGGGCGAACAGGCGCCG
CCACGGACCACTCCTCCATCCTCTTCGATGTGGATGTGACGACCGGCCTG
ATATGTGAAGGCTCCATCAACGCCCACTGGTACGAGCTGGGTGTGGGGAA
GCCCTTCCGCACGGCGTGGCGGTCCACCTACACCACAAACACGCACCCCG
ACGCGCCTGGCCTGGTGGTGACGGGGCGGCACATCCACGCGGACATGGCG
GCCTTGCGCGCTCTTGTCTGCCGGGCCCACTTCTTGATGCTGCCTGACGT
GCCTTTCGTGGGATGGGACGTGGCGCTCACTAGCACGGGGGAGTTCTTGT
TGGAGGTGAATTTGTCGTGCAACTTCTTCAGGGGCTCGTTCGAGAAGCCT
CGGTACTTCGCTTTCTGTCGCGACTACCTGGTTCAGCTGCAGAAGGTGCG
GCGGCAGGCAGAGGGGGGGGAGAAGAAGGAGAGATGAATCAAGGGGACAG
GAAAGTCTTGCTTCTCGTAGACTGACACGTATGACTACAGTCTCGAGAGG
TGGGCCAGAGGCACGTGTACCGGCCGCTTGTGAGCTCTGTGCCACCTGAT
GGACACACGCCCGTAGAGACTGAGCCGCGTAAGGCGGCGAGCGCACTCCA
CTCAAAGCACCAGTAAAGTGGAACAACAGCGGAAGCACGACTCGCGAAGT
AGTAAGAGAGGAAGGACTGCTTAAGACTCCAAAAGAAATAACTGTCTGAC
AGCTTCCCTCCTCCGGCACCATGCATGACAGGTTACCTGTGTCCCTCCTG
CAGCGGGGAATAAACAACACAAATCAATCAATCAAACGATCATTTTT
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Coding sequence (CDS) from alignment at scaffold_33:148796..150492-

>mRNA_9272 ID=mRNA_9272|Name=jgi.p|Nanoce1779_2|605932|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at scaffold_33:148796..150492- (Nannochloropsis oceanica)
ATGTGGGCACTCATAGCCACATTGCTGACTTATTGGCGAGTATTTTTCTA
CTTTTGGCGTTCAAGCGGCGACTTTGAGGGCTGTCCGTTTCTGAAGCGCG
AGCAAGACTTGCCCGCCAAGGTGCACGTCTATGGCCTCTGGCTCGACCTG
TACCTGTGGGACCGACCGCATTACCGGGCGCCAACCTACCGTCATGACCT
CTTGGCGAATCTGTGCAACGTGGCGGTGCCGGGAACGGGCCTCCCCTTGA
GCTTTTTCTGCGTAGCCAAGCCCTTAGCCTACCTGTTCTTCACCCTTCTG
TACCCGGTGGTGGCCTTCCTGGGGGCGGTGAATGTGGCCCGCACGGCGCC
AAAGTCCCAGGGCAAGTACGCGGCTTTGACCGAGGCCTTTCGGGAGCATT
TATTGACACCTGAGGATTGGTTTAATTTCTGGCGGCTCAACTCCCGCATC
GCGGCCTACCATGAGCTGCTCACGCACAGCCCTGGCTACGCGCAGGAAGA
CAAATGGACCTTTTTGATGGACGGGGACCGGCTGGGTGTGCCCGTCTCGC
CCGTGCTCAAGACGGCAAGCATTGTGGTCAAGAACAAAAATGAGGAGGGT
GGCTTGGGCATCTACTTTTACAAAAATGCACTGGCCGGCGGGGACTGGAT
CATCCAAGAACGTCTCCAAAACTCGGACTTTCTCCGCGAGCACCTCCTCC
CGCCCAACGCCCCCCTCTCCACCCTCCGCGTCATCACCGCCTCCCGAGGC
GGCCTCACACCCGACGATCCCCGTGTGGGCCGGCCCGCCACCGACGAGGG
CTTTGCCAACTTGCCCGCCAACCACATCGAGGCGCTCTCCTGTGTCTTCA
GGGCAGGGCGAACAGGCGCCGCCACGGACCACTCCTCCATCCTCTTCGAT
GTGGATGTGACGACCGGCCTGATATGTGAAGGCTCCATCAACGCCCACTG
GTACGAGCTGGGTGTGGGGAAGCCCTTCCGCACGGCGTGGCGGTCCACCT
ACACCACAAACACGCACCCCGACGCGCCTGGCCTGGTGGTGACGGGGCGG
CACATCCACGCGGACATGGCGGCCTTGCGCGCTCTTGTCTGCCGGGCCCA
CTTCTTGATGCTGCCTGACGTGCCTTTCGTGGGATGGGACGTGGCGCTCA
CTAGCACGGGGGAGTTCTTGTTGGAGGTGAATTTGTCGTGCAACTTCTTC
AGGGGCTCGTTCGAGAAGCCTCGGTACTTCGCTTTCTGTCGCGACTACCT
GGTTCAGCTGCAGAAGGTGCGGCGGCAGGCAGAGGGGGGGGAGAAGAAGG
AGAGATGA
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Synonyms
Publications