jgi.p|Nanoce1779_2|605931, mRNA_9271 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605931
Unique NamemRNA_9271
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1165
Alignment locationscaffold_33:147539..148703 +

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Properties
Property NameValue
TranscriptId606017
TrackFilteredModels2
ProteinId605931
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:147539..148703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605931gene_9271Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605931mRNA_9271-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9271CDS_9271Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9271 ID=mRNA_9271|Name=jgi.p|Nanoce1779_2|605931|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp
CCGACCTCCAAGCAGCCATCAAGCTCACCCATGACCTGATCCGAACTCAA
GAAGACGCCGCAGCAGCAGCTGCAGCAGCAGCAATAACGTCAGCAACAGC
AACAGCAACAGCGACAGCAGCAACAGCACAAACGACAGCTGCAAGAGCAA
CGCCAGCAGCAGCAGCAGTTATGGAGATGCAATTGAGGAAGGGTGGAGAG
GCGGGATGGGTGCCCGCTGTCGGAGAGAGGGTGGATGCTCCCTGGGGCAC
GGGGGAGAAGCGATTCCCGGCGGTGGTGGTGGCGGTGGAGAAGGGAGGGG
AGATAGTGACATTGAAGTATTATGGTTACGCTGAGACTGAGGTATGTGGT
TGGGAGCGAAGAGCTGGGTGCAGGCCTTGCCTAAATGTTCACATGTGTTC
TCCTTATTCTATTGTTCTTTACCGCTCATCTCCTCCCTCACTCCCTCACT
TTCTTTGCCCTTCCTCTTCAGGTAAAACCCACGTCCGATGTTCGTCTCCT
CACACCTCCCGGAGGCTCTGCCACCTTGCCCCCTGGCGTGGCGACGGTGG
GGTGGAAGGGAGAAGCAGTGTGGGTGGGGGACGGGCAGTGGTACGAGGCG
CAGGTGCTGGGGCTGGTGGAGCACGGGTACAGGATCAAGTTTGTGAAGTA
TGGGAATGAGGGCGAGGTACCCTTGGAGTTCTTGAGAGAGAAGAGCAGCA
GCAGCAGTGGTGCCTATGCCGGAGGGGGGGAAGCAGGGAACGAAGGAGTG
CCGAAGCGCGGGAGGGAGGCGAAAGAGGTGAAGGAGTTTGTGATTCCCGA
CGCACTGCGGTTGTTGCCCACAGACAGCGAGGAGGAGAAGGCGAGGAAGA
GGAGGAAAGTGAAGCACCTGAAGGGCCTGTGGAAGCAGCGGACACGTGGG
GGAGGCGGGGGCGAGGACGAGGTGGAGGAGACGCGGAGCTGGCAGGCGTA
CCTGGCCAAGAGCAAGCGGCCCAAGCTGGGCATGGGGGCCTTGAAGAAGG
GGTCGATTTTCAAGAGCCCGGAGGCGGTGGACGGGAAGGTGGGGGTCATG
GGCTCAGGCGCGGGGATGACGGACTTTGCCAAGCGAGCGTTCAAGCCGGG
GAAGGGAGGAGGGGCGGGGGGGGGGGAGTAATCGGTGAGGGAGGAAGGGA
GGGAGGGAAGAGGAG
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protein sequence of jgi.p|Nanoce1779_2|605931

>mRNA_9271-protein ID=mRNA_9271-protein|Name=jgi.p|Nanoce1779_2|605931|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MFTCVLLILLFFTAHLLPHSLTFFALPLQVKPTSDVRLLTPPGGSATLPP
GVATVGWKGEAVWVGDGQWYEAQVLGLVEHGYRIKFVKYGNEGEVPLEFL
REKSSSSSGAYAGGGEAGNEGVPKRGREAKEVKEFVIPDALRLLPTDSEE
EKARKRRKVKHLKGLWKQRTRGGGGGEDEVEETRSWQAYLAKSKRPKLGM
GALKKGSIFKSPEAVDGKVGVMGSGAGMTDFAKRAFKPGKGGGAGGGE*
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mRNA from alignment at scaffold_33:147539..148703+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9271 ID=mRNA_9271|Name=jgi.p|Nanoce1779_2|605931|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp|location=Sequence derived from alignment at scaffold_33:147539..148703+ (Nannochloropsis oceanica)
CCGACCTCCAAGCAGCCATCAAGCTCACCCATGACCTGATCCGAACTCAA
GAAGACGCCGCAGCAGCAGCTGCAGCAGCAGCAATAACGTCAGCAACAGC
AACAGCAACAGCGACAGCAGCAACAGCACAAACGACAGCTGCAAGAGCAA
CGCCAGCAGCAGCAGCAGTTATGGAGATGCAATTGAGGAAGGGTGGAGAG
GCGGGATGGGTGCCCGCTGTCGGAGAGAGGGTGGATGCTCCCTGGGGCAC
GGGGGAGAAGCGATTCCCGGCGGTGGTGGTGGCGGTGGAGAAGGGAGGGG
AGATAGTGACATTGAAGTATTATGGTTACGCTGAGACTGAGGTATGTGGT
TGGGAGCGAAGAGCTGGGTGCAGGCCTTGCCTAAATGTTCACATGTGTTC
TCCTTATTCTATTGTTCTTTACCGCTCATCTCCTCCCTCACTCCCTCACT
TTCTTTGCCCTTCCTCTTCAGGTAAAACCCACGTCCGATGTTCGTCTCCT
CACACCTCCCGGAGGCTCTGCCACCTTGCCCCCTGGCGTGGCGACGGTGG
GGTGGAAGGGAGAAGCAGTGTGGGTGGGGGACGGGCAGTGGTACGAGGCG
CAGGTGCTGGGGCTGGTGGAGCACGGGTACAGGATCAAGTTTGTGAAGTA
TGGGAATGAGGGCGAGGTACCCTTGGAGTTCTTGAGAGAGAAGAGCAGCA
GCAGCAGTGGTGCCTATGCCGGAGGGGGGGAAGCAGGGAACGAAGGAGTG
CCGAAGCGCGGGAGGGAGGCGAAAGAGGTGAAGGAGTTTGTGATTCCCGA
CGCACTGCGGTTGTTGCCCACAGACAGCGAGGAGGAGAAGGCGAGGAAGA
GGAGGAAAGTGAAGCACCTGAAGGGCCTGTGGAAGCAGCGGACACGTGGG
GGAGGCGGGGGCGAGGACGAGGTGGAGGAGACGCGGAGCTGGCAGGCGTA
CCTGGCCAAGAGCAAGCGGCCCAAGCTGGGCATGGGGGCCTTGAAGAAGG
GGTCGATTTTCAAGAGCCCGGAGGCGGTGGACGGGAAGGTGGGGGTCATG
GGCTCAGGCGCGGGGATGACGGACTTTGCCAAGCGAGCGTTCAAGCCGGG
GAAGGGAGGAGGGGCGGGGGGGGGGGAGTAATCGGTGAGGGAGGAAGGGA
GGGAGGGAAGAGGAG
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Coding sequence (CDS) from alignment at scaffold_33:147539..148703+

>mRNA_9271 ID=mRNA_9271|Name=jgi.p|Nanoce1779_2|605931|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_33:147539..148703+ (Nannochloropsis oceanica)
ATGTTCACATGTGTTCTCCTTATTCTATTGTTCTTTACCGCTCATCTCCT
CCCTCACTCCCTCACTTTCTTTGCCCTTCCTCTTCAGGTAAAACCCACGT
CCGATGTTCGTCTCCTCACACCTCCCGGAGGCTCTGCCACCTTGCCCCCT
GGCGTGGCGACGGTGGGGTGGAAGGGAGAAGCAGTGTGGGTGGGGGACGG
GCAGTGGTACGAGGCGCAGGTGCTGGGGCTGGTGGAGCACGGGTACAGGA
TCAAGTTTGTGAAGTATGGGAATGAGGGCGAGGTACCCTTGGAGTTCTTG
AGAGAGAAGAGCAGCAGCAGCAGTGGTGCCTATGCCGGAGGGGGGGAAGC
AGGGAACGAAGGAGTGCCGAAGCGCGGGAGGGAGGCGAAAGAGGTGAAGG
AGTTTGTGATTCCCGACGCACTGCGGTTGTTGCCCACAGACAGCGAGGAG
GAGAAGGCGAGGAAGAGGAGGAAAGTGAAGCACCTGAAGGGCCTGTGGAA
GCAGCGGACACGTGGGGGAGGCGGGGGCGAGGACGAGGTGGAGGAGACGC
GGAGCTGGCAGGCGTACCTGGCCAAGAGCAAGCGGCCCAAGCTGGGCATG
GGGGCCTTGAAGAAGGGGTCGATTTTCAAGAGCCCGGAGGCGGTGGACGG
GAAGGTGGGGGTCATGGGCTCAGGCGCGGGGATGACGGACTTTGCCAAGC
GAGCGTTCAAGCCGGGGAAGGGAGGAGGGGCGGGGGGGGGGGAGTAA
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Synonyms
Publications