jgi.p|Nanoce1779_2|605927, mRNA_9270 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605927
Unique NamemRNA_9270
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length431
Alignment locationscaffold_33:146645..147622 +

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Properties
Property NameValue
TranscriptId606013
TrackFilteredModels2
ProteinId605927
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:146645..147622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605927gene_9270Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605927mRNA_9270-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9270CDS_9270Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9270 ID=mRNA_9270|Name=jgi.p|Nanoce1779_2|605927|organism=Nannochloropsis oceanica|type=mRNA|length=431bp
GCGCCTCAGACTACGCCCCCATCCTTCATCGCTTTGTCGCCTCCTCCTCC
TAAACCTCGGCCCAGGCAACACATACTTATTCATCCCTGACCTCCATGAT
GGTGTCATTCCAGAGAAAAAAATTGCCTGAAACTAGCATGCCATTGTCGT
GGTTTATTACCCCCCTTTTCCTCCTTTTCCCATCTACACCAGGTACAGGG
ATTCGACCACTCTTCTTGCTTAGTGCGTCCCCATGCAGAGCCTCGAGGAG
CTCCAGGCCGCCTTGGCCACGTACAAGACACAGACGGATCAGGTACAAAG
CCTCCTAGACCTAGACCCAAGCAATGAGGCTTACCTCACCCTCAAATCCG
ACCTCCAAGCAGCCATCAAGCTCACCCATGACCTGATCCGAACTCAAGAA
GACGCCGCAGCAGCAGCTGCAGCAGCAGCAA
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protein sequence of jgi.p|Nanoce1779_2|605927

>mRNA_9270-protein ID=mRNA_9270-protein|Name=jgi.p|Nanoce1779_2|605927|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MMVSFQRKKLPETSMPLSWFITPLFLLFPSTPGTGIRPLFLLSASPCRAS
RSSRPPWPRTRHRRIRYKAS*
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mRNA from alignment at scaffold_33:146645..147622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9270 ID=mRNA_9270|Name=jgi.p|Nanoce1779_2|605927|organism=Nannochloropsis oceanica|type=mRNA|length=978bp|location=Sequence derived from alignment at scaffold_33:146645..147622+ (Nannochloropsis oceanica)
GCGCCTCAGACTACGCCCCCATCCTTCATCGCTTTGTCGCCTCCTCCTCC
TAAACCTCGGCCCAGGCAACACATACTTATTCATCCCTGACCTCCATGAT
GGTGTCATTCCAGAGAAAAAAATTGCCTGAAACTAGCATGCCATTGTCGT
GGTTTATTACCCCCCTTTTCCTCCTTTTCCCATCTACACCAGGTACAGGG
ATTCGACCACTCTTCTTGCTTAGTGCGTCCCCATGCAGAGCCTCGAGGAG
CTCCAGGCCGCCTTGGCCACGTACAAGACACAGACGGATCAGGTAAGCAT
CAAGCTAGCACGAGAGTGTGGTAGTGCGAAGGGTTGAGACTTCTCTCTGT
TTTGGTTGATGATGCACTGAGGGCACTCGCTCGCCCGATGGAAGGAATGC
GTCATCATCGTGGTCGTCCCGTCGGACAACTGCTTAAGCTTAGGTTGCTA
CTTCTGGCGTGACTTATACGGAATTGTGGTGTGGATAGATATTCCTAGGC
ACAAGAGGTGTGTCGGTGCTGGTATTTAGTGTGAACAAGACGAAGGGGGC
CTGCGAGCGAGTTGTATACTCCTTGTGCCCCCATCCACAAGCTGTTGTAG
TAGCTGTATCCCTTTTTCTAATTGATCTCTTAGGCACTCCAAAAAGCATG
GGCAATTGTGCAGAATACTTGGCTTCGTGACTTGTACCTTCCGTCTTTAT
CGTCTAGCTCTTTGTATCGTCTTCATCATTCTCCTCTCGTTTGACATGGG
ACCCCCATTCAACCGCACCATCCAATCTGACCTCCTCTCATTCCCCTCCT
CGTCTTCCCTCCCTCCCTTTCTCTCTCGTTCTTTCGCAGGTACAAAGCCT
CCTAGACCTAGACCCAAGCAATGAGGCTTACCTCACCCTCAAATCCGACC
TCCAAGCAGCCATCAAGCTCACCCATGACCTGATCCGAACTCAAGAAGAC
GCCGCAGCAGCAGCTGCAGCAGCAGCAA
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Coding sequence (CDS) from alignment at scaffold_33:146645..147622+

>mRNA_9270 ID=mRNA_9270|Name=jgi.p|Nanoce1779_2|605927|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_33:146645..147622+ (Nannochloropsis oceanica)
ATGATGGTGTCATTCCAGAGAAAAAAATTGCCTGAAACTAGCATGCCATT
GTCGTGGTTTATTACCCCCCTTTTCCTCCTTTTCCCATCTACACCAGGTA
CAGGGATTCGACCACTCTTCTTGCTTAGTGCGTCCCCATGCAGAGCCTCG
AGGAGCTCCAGGCCGCCTTGGCCACGTACAAGACACAGACGGATCAGGTA
CAAAGCCTCCTAGATGATGGTGTCATTCCAGAGAAAAAAATTGCCTGAAA
CTAGCATGCCATTGTCGTGGTTTATTACCCCCCTTTTCCTCCTTTTCCCA
TCTACACCAGGTACAGGGATTCGACCACTCTTCTTGCTTAGTGCGTCCCC
ATGCAGAGCCTCGAGGAGCTCCAGGCCGCCTTGGCCACGTACAAGACACA
GACGGATCAGGTACAAAGCCTCCTAG
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Synonyms
Publications