jgi.p|Nanoce1779_2|605920, mRNA_9269 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605920
Unique NamemRNA_9269
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length532
Alignment locationscaffold_33:145307..146205 -

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Properties
Property NameValue
TranscriptId606006
TrackFilteredModels2
ProteinId605920
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:145307..146205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605920gene_9269Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605920mRNA_9269-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9269CDS_9269Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9269 ID=mRNA_9269|Name=jgi.p|Nanoce1779_2|605920|organism=Nannochloropsis oceanica|type=mRNA|length=532bp
ACAGGTCTTTCAGCCATGGCCCCAGCAGCGAAGAAGTCGAAGAAGGCAAT
CGAGTCCATCAACTCGCGCCTGCAGCTGGTGATGAAGTCCGGAAAGGCCT
CACTCGGCTACAAGGAGACACTTAAGACCCTGCGCAACAACAAGGCCAAG
GTCGTCATCATCAGCAGCAACTGCCCGCCCCTCCGCAAGTCCGAGATTGA
GTACTATGCCATGTTGAGCAAGACCGAGACAATCCTCTACAACGGGAGCA
ACACGGATCTGGGCACGGCCTGCGGGAAGTTCTTCCGTGTGTCTGTGTTG
TCCGTGACCAACCCCGGCGACTCGGACATTGCTCGCCCTGCGGAATAGAG
AGAGGCACAAGGGGGTTGGGTGGAGAGAGCGGCGAGGACGGGAGGAGGGA
AGCTTAGGAAAGGCTGAGCCTGAGTGGAGAGGCAGCGGGTAGTCTGCCGA
GCCCCCGGTGCGCCTCGTGATGTGAGTTGTGGAGAGGCATCAAGCCAGCA
GCAGGCACAAAGAAGAAAATTAAGAAAGATTA
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protein sequence of jgi.p|Nanoce1779_2|605920

>mRNA_9269-protein ID=mRNA_9269-protein|Name=jgi.p|Nanoce1779_2|605920|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MAPAAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIIS
SNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNP
GDSDIARPAE*
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mRNA from alignment at scaffold_33:145307..146205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9269 ID=mRNA_9269|Name=jgi.p|Nanoce1779_2|605920|organism=Nannochloropsis oceanica|type=mRNA|length=899bp|location=Sequence derived from alignment at scaffold_33:145307..146205- (Nannochloropsis oceanica)
ACAGGTCTTTCAGCCATGGCCCCAGCAGCGAAGAAGTCGGTACGTGCTCG
CGGCGTTTGAAGCGGGAGTCGTAGAGGGATGAGAGAGGGACAGGAGGGGT
GTACGGGTGGGGAATGTAGACGGATGTGGGAGTGGAGCACCACTCTTCGA
AACTGGTAGGGCGTGGTGGTGCTGCGATTTGCCTCTCAGTCAGTGTAGGG
TGAACCCCGCCGCAGACTTATGTATAAACTTGAGCTGTTCAAGGAATGTC
ACTGCATGCCTTCCGGCTTGGAAAGGCATTGTCCTATTTTCCCGGTTGGG
TTCAGTCCTCTCCGCCTAGGATTGCCCCAACCCGCGCTTCCGTCTTCCCA
TCACGTCTCTCATTCCTTGTCCCTTCCCTACCCCTTTTCTTTCCCAATCC
AAGCAGAAGAAGGCAATCGAGTCCATCAACTCGCGCCTGCAGCTGGTGAT
GAAGTCCGGAAAGGCCTCACTCGGCTACAAGGAGACACTTAAGACCCTGC
GCAACAACAAGGCCAAGGTCGTCATCATCAGCAGCAACTGCCCGCCCCTC
CGCAAGTCCGAGATTGAGTACTATGCCATGTTGAGCAAGACCGAGACAAT
CCTCTACAACGGGAGCAACACGGATCTGGGCACGGCCTGCGGGAAGTTCT
TCCGTGTGTCTGTGTTGTCCGTGACCAACCCCGGCGACTCGGACATTGCT
CGCCCTGCGGAATAGAGAGAGGCACAAGGGGGTTGGGTGGAGAGAGCGGC
GAGGACGGGAGGAGGGAAGCTTAGGAAAGGCTGAGCCTGAGTGGAGAGGC
AGCGGGTAGTCTGCCGAGCCCCCGGTGCGCCTCGTGATGTGAGTTGTGGA
GAGGCATCAAGCCAGCAGCAGGCACAAAGAAGAAAATTAAGAAAGATTA
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Coding sequence (CDS) from alignment at scaffold_33:145307..146205-

>mRNA_9269 ID=mRNA_9269|Name=jgi.p|Nanoce1779_2|605920|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_33:145307..146205- (Nannochloropsis oceanica)
AAGAAGGCAATCGAGTCCATCAACTCGCGCCTGCAGCTGGTGATGAAGTC
CGGAAAGGCCTCACTCGGCTACAAGGAGACACTTAAGACCCTGCGCAACA
ACAAGGCCAAGGTCGTCATCATCAGCAGCAACTGCCCGCCCCTCCGCAAG
TCCGAGATTGAGTACTATGCCATGTTGAGCAAGACCGAGACAATCCTCTA
CAACGGGAGCAACACGGATCTGGGCACGGCCTGCGGGAAGTTCTTCCGTG
TGTCTGTGTTGTCCGTGACCAACCCCGGCGACTCGGACATTGCTCGCCCT
GCGGAATAGATGGCCCCAGCAGCGAAGAAGTCGAAGAAGGCAATCGAGTC
CATCAACTCGCGCCTGCAGCTGGTGATGAAGTCCGGAAAGGCCTCACTCG
GCTACAAGGAGACACTTAAGACCCTGCGCAACAACAAGGCCAAGGTCGTC
ATCATCAGCAGCAACTGCCCGCCCCTCCGCAAGTCCGAGATTGAGTACTA
TGCCATGTTGAGCAAGACCGAGACAATCCTCTACAACGGGAGCAACACGG
ATCTGGGCACGGCCTGCGGGAAGTTCTTCCGTGTGTCTGTGTTGTCCGTG
ACCAACCCCGGCGACTCGGACATTGCTCGCCCTGCGGAATAGATGGCCCC
AGCAGCGAAGAAGTCG
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Synonyms
Publications