jgi.p|Nanoce1779_2|533194, mRNA_9268 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533194
Unique Name	mRNA_9268
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	888
Alignment location	scaffold_33:143854..145053 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	533280
Track	FilteredModels2
ProteinId	533194

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:143854..145053 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533194	gene_9268	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533194	mRNA_9268-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9268	CDS_9268	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:143854..145053+
coding sequence from alignment at scaffold_33:143854..145053+

mRNA sequence

>mRNA_9268 ID=mRNA_9268|Name=jgi.p|Nanoce1779_2|533194|organism=Nannochloropsis oceanica|type=mRNA|length=888bp
ATGTCGGGCCCAAACCCGTTGGCCGTAGTGCCCCCGGCATTGAAAAAGAT
CACGCCCTACATCCGGCGGGCGGAGGAATTGGACAGGGACACCGAGTCCA
AGGCGGTCGCGTACTACTGCCGGACGTATGCTATGGACCAGGGCATGCTG
CTCCGGGACGCCAACAACGCCAAGGAAGTAATGCCCTTTTTGATCGCCCT
TATGGACCGGCTGGAGCAGGACAAGAAGTCGCTGCCCATCTATACCCCCG
CGGAGGGCAAGGCGCTTGTGCAGTCCTTTGCGGATAAGGTGTTTACCAAG
GCCGACGAGGACGACCAGCTCGGCGTGTGGGACAAGAACACCGCCCGGAC
GTTCTATGCCGCCGGAGTGTTCTACGACGTGATGCAGCAGTTCAAAGGTT
TGCTGGTCCCAGAGATTGAGAAGAAGCGAAAGTACTGCAAGTGGAAGGCA
ACCGACATCCTGACTGCGCTTAAGGAAGGCCGGGCACCCACGCAAGGCGG
CGGCGGATTCGCGGCCACGGCTGGCGGAGCCGAAGAAAGAAGAGGAGAAG
AGGAGGAAGGAGCGCTCGATCCGCCTTTGACCGAAGTCAATCCGTCTACC
TTTCGTCCACCTCCTCCTTACGTCGCAGTGGCTCCTCCTACCCCCCCTCC
CGCCTCTGCCGCGTCTGTTTTTGCTCCCTCAGCACTCAAGCCTGCCACCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAGTAGAGGTGGTGTG
GGGATGTCCCCGAAGCAAGCACTGCTGGATGACGCAAGGGAGTTGTGCTA
CTTCGCCATCGCGGCCATTCAGCACAAGGAGGCGGCACTAGCGAGGGAGA
GGTTGGAGAAGGCGCTGGAGAAGCTCAAGGGGCTGTGA

protein sequence of jgi.p|Nanoce1779_2|533194

>mRNA_9268-protein ID=mRNA_9268-protein|Name=jgi.p|Nanoce1779_2|533194|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MSGPNPLAVVPPALKKITPYIRRAEELDRDTESKAVAYYCRTYAMDQGML
LRDANNAKEVMPFLIALMDRLEQDKKSLPIYTPAEGKALVQSFADKVFTK
ADEDDQLGVWDKNTARTFYAAGVFYDVMQQFKGLLVPEIEKKRKYCKWKA
TDILTALKEGRAPTQGGGGFAATAGGAEERRGEEEEGALDPPLTEVNPST
FRPPPPYVAVAPPTPPPASAASVFAPSALKPATSSSSSSSSSSSGSRGGV
GMSPKQALLDDARELCYFAIAAIQHKEAALARERLEKALEKLKGL*

mRNA from alignment at scaffold_33:143854..145053+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9268 ID=mRNA_9268|Name=jgi.p|Nanoce1779_2|533194|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp|location=Sequence derived from alignment at scaffold_33:143854..145053+ (Nannochloropsis oceanica)
ATGTCGGGCCCAAACCCGTTGGCCGTAGTGCCCCCGGCATTGAAAAAGAT
CACGCCCTACATCCGGCGGGCGGAGGAATTGGACAGGGACACCGTTTACC
CGGTAAGTGCGGCGGCTGCTGCTCATGATTATACTGGCGCATGGGGGAGC
CCCCCACTGACAACGACTGTTCTACGACGCACGATACAGGAGTCCAAGGC
GGTCGCGTACTACTGCCGGACGTATGCTATGGACCAGGGCATGCTGCTCC
GGGACGCCAACAACGCCAAGGAAGTAATGCCCTTTTTGATCGCCCTTATG
GACCGGCTGGAGCAGGACAAGAAGTCGCTGCCCATCTATACCCCCGCGGA
GGGCAAGGCGCTTGTGCAGTCCTTTGCGGATAAGGTGTTTACCAAGGCCG
ACGAGGTAAATTTTCCAGCATGGAAACTCTGTCTCATTCTTACGCAGCCA
AACCACTCATCGTCTTTCTCTCGCGTTCCTACCCTATACCCACACGCACA
GGACGACCAGCTCGGCGTGTGGGACAAGAACACCGCCCGGACGTTCTATG
CCGCCGGAGTGTTCTACGACGTGATGCAGCAGTTCAAAGGTTTGCTGGTC
CCAGAGATTGAGAAGAAGCGAAAGTACTGCAAGTGGAAGGCAACCGACAT
CCTGACTGCGCTTAAGGAAGGCCGGGCACCCACGCAAGGCGGCGGCGGAT
TCGCGGCCACGGCTGGCGGAGCCGAAGAAAGAAGAGGAGAAGAGGAGGAA
GGAGCGCTCGATCCGCCTTTGACCGAAGTCAAGTCTTCCACTGCCTCCTC
ATCCTTTCCTCCCTCCTACGCAGCCACCCTTGGAGAAGGAGAAGGTGGAG
AAGGAGGAATCTCTTCCCCCACCCCAACCTCTTCCCCGCTTTCATCCGCC
AGTCCGTCTACCTTTCGTCCACCTCCTCCTTACGTCGCAGTGGCTCCTCC
TACCCCCCCTCCCGCCTCTGCCGCGTCTGTTTTTGCTCCCTCAGCACTCA
AGCCTGCCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAGT
AGAGGTGGTGTGGGGATGTCCCCGAAGCAAGCACTGCTGGATGACGCAAG
GGAGTTGTGCTACTTCGCCATCGCGGCCATTCAGCACAAGGAGGCGGCAC
TAGCGAGGGAGAGGTTGGAGAAGGCGCTGGAGAAGCTCAAGGGGCTGTGA

Coding sequence (CDS) from alignment at scaffold_33:143854..145053+

>mRNA_9268 ID=mRNA_9268|Name=jgi.p|Nanoce1779_2|533194|organism=Nannochloropsis oceanica|type=CDS|length=3552bp|location=Sequence derived from alignment at scaffold_33:143854..145053+ (Nannochloropsis oceanica)
ATGTCGGGCCCAAACCCGTTGGCCGTAGTGCCCCCGGCATTGAAAAAGAT
CACGCCCTACATCCGGCGGGCGGAGGAATTGGACAGGGACACCGAGTCCA
AGGCGGTCGCGTACTACTGCCGGACGTATGCTATGGACCAGGGCATGCTG
CTCCGGGACGCCAACAACGCCAAGGAAGTAATGCCCTTTTTGATCGCCCT
TATGGACCGGCTGGAGCAGGACAAGAAGTCGCTGCCCATCTATACCCCCG
CGGAGGGCAAGGCGCTTGTGCAGTCCTTTGCGGATAAGGTGTTTACCAAG
GCCGACGAGGACGACCAGCTCGGCGTGTGGGACAAGAACACCGCCCGGAC
GTTCTATGCCGCCGGAGTGTTCTACGACGTGATGCAGCAGTTCAAAGGTT
TGCTGGTCCCAGAGATTGAGAAGAAGCGAAAGTACTGCAAGTGGAAGGCA
ACCGACATCCTGACTGCGCTTAAGGAAGGCCGGGCACCCACGCAAGGCGG
CGGCGGATTCGCGGCCACGGCTGGCGGAGCCGAAGAAAGAAGAGGAGAAG
AGGAGGAAGGAGCGCTCGATCCGCCTTTGACCGAAGTCAATCCGTCTACC
TTTCGTCCACCTCCTCCTTACGTCGCAGTGGCTCCTCCTACCCCCCCTCC
CGCCTCTGCCGCGTCTGTTTTTGCTCCCTCAGCACTCAAGCCTGCCACCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAGTAGAGGTGGTGTG
GGGATGTCCCCGAAGCAAGCACTGCTGGATGACGCAAGGGAGTTGTGCTA
CTTCGCCATCGCGGCCATTCAGCACAAGGAGGCGGCACTAGCGAGGGAGA
GGTTGGAGAAGGCGCTGGAGAAGCTCAAGGGGCTGTGAATGTCGGGCCCA
AACCCGTTGGCCGTAGTGCCCCCGGCATTGAAAAAGATCACGCCCTACAT
CCGGCGGGCGGAGGAATTGGACAGGGACACCGAGTCCAAGGCGGTCGCGT
ACTACTGCCGGACGTATGCTATGGACCAGGGCATGCTGCTCCGGGACGCC
AACAACGCCAAGGAAGTAATGCCCTTTTTGATCGCCCTTATGGACCGGCT
GGAGCAGGACAAGAAGTCGCTGCCCATCTATACCCCCGCGGAGGGCAAGG
CGCTTGTGCAGTCCTTTGCGGATAAGGTGTTTACCAAGGCCGACGAGGAC
GACCAGCTCGGCGTGTGGGACAAGAACACCGCCCGGACGTTCTATGCCGC
CGGAGTGTTCTACGACGTGATGCAGCAGTTCAAAGGTTTGCTGGTCCCAG
AGATTGAGAAGAAGCGAAAGTACTGCAAGTGGAAGGCAACCGACATCCTG
ACTGCGCTTAAGGAAGGCCGGGCACCCACGCAAGGCGGCGGCGGATTCGC
GGCCACGGCTGGCGGAGCCGAAGAAAGAAGAGGAGAAGAGGAGGAAGGAG
CGCTCGATCCGCCTTTGACCGAAGTCAATCCGTCTACCTTTCGTCCACCT
CCTCCTTACGTCGCAGTGGCTCCTCCTACCCCCCCTCCCGCCTCTGCCGC
GTCTGTTTTTGCTCCCTCAGCACTCAAGCCTGCCACCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCGGGAGTAGAGGTGGTGTGGGGATGTCCCCG
AAGCAAGCACTGCTGGATGACGCAAGGGAGTTGTGCTACTTCGCCATCGC
GGCCATTCAGCACAAGGAGGCGGCACTAGCGAGGGAGAGGTTGGAGAAGG
CGCTGGAGAAGCTCAAGGGGCTGTGAATGTCGGGCCCAAACCCGTTGGCC
GTAGTGCCCCCGGCATTGAAAAAGATCACGCCCTACATCCGGCGGGCGGA
GGAATTGGACAGGGACACCGAGTCCAAGGCGGTCGCGTACTACTGCCGGA
CGTATGCTATGGACCAGGGCATGCTGCTCCGGGACGCCAACAACGCCAAG
GAAGTAATGCCCTTTTTGATCGCCCTTATGGACCGGCTGGAGCAGGACAA
GAAGTCGCTGCCCATCTATACCCCCGCGGAGGGCAAGGCGCTTGTGCAGT
CCTTTGCGGATAAGGTGTTTACCAAGGCCGACGAGGACGACCAGCTCGGC
GTGTGGGACAAGAACACCGCCCGGACGTTCTATGCCGCCGGAGTGTTCTA
CGACGTGATGCAGCAGTTCAAAGGTTTGCTGGTCCCAGAGATTGAGAAGA
AGCGAAAGTACTGCAAGTGGAAGGCAACCGACATCCTGACTGCGCTTAAG
GAAGGCCGGGCACCCACGCAAGGCGGCGGCGGATTCGCGGCCACGGCTGG
CGGAGCCGAAGAAAGAAGAGGAGAAGAGGAGGAAGGAGCGCTCGATCCGC
CTTTGACCGAAGTCAATCCGTCTACCTTTCGTCCACCTCCTCCTTACGTC
GCAGTGGCTCCTCCTACCCCCCCTCCCGCCTCTGCCGCGTCTGTTTTTGC
TCCCTCAGCACTCAAGCCTGCCACCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCGGGAGTAGAGGTGGTGTGGGGATGTCCCCGAAGCAAGCACTG
CTGGATGACGCAAGGGAGTTGTGCTACTTCGCCATCGCGGCCATTCAGCA
CAAGGAGGCGGCACTAGCGAGGGAGAGGTTGGAGAAGGCGCTGGAGAAGC
TCAAGGGGCTGTGAATGTCGGGCCCAAACCCGTTGGCCGTAGTGCCCCCG
GCATTGAAAAAGATCACGCCCTACATCCGGCGGGCGGAGGAATTGGACAG
GGACACCGAGTCCAAGGCGGTCGCGTACTACTGCCGGACGTATGCTATGG
ACCAGGGCATGCTGCTCCGGGACGCCAACAACGCCAAGGAAGTAATGCCC
TTTTTGATCGCCCTTATGGACCGGCTGGAGCAGGACAAGAAGTCGCTGCC
CATCTATACCCCCGCGGAGGGCAAGGCGCTTGTGCAGTCCTTTGCGGATA
AGGTGTTTACCAAGGCCGACGAGGACGACCAGCTCGGCGTGTGGGACAAG
AACACCGCCCGGACGTTCTATGCCGCCGGAGTGTTCTACGACGTGATGCA
GCAGTTCAAAGGTTTGCTGGTCCCAGAGATTGAGAAGAAGCGAAAGTACT
GCAAGTGGAAGGCAACCGACATCCTGACTGCGCTTAAGGAAGGCCGGGCA
CCCACGCAAGGCGGCGGCGGATTCGCGGCCACGGCTGGCGGAGCCGAAGA
AAGAAGAGGAGAAGAGGAGGAAGGAGCGCTCGATCCGCCTTTGACCGAAG
TCAATCCGTCTACCTTTCGTCCACCTCCTCCTTACGTCGCAGTGGCTCCT
CCTACCCCCCCTCCCGCCTCTGCCGCGTCTGTTTTTGCTCCCTCAGCACT
CAAGCCTGCCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGA
GTAGAGGTGGTGTGGGGATGTCCCCGAAGCAAGCACTGCTGGATGACGCA
AGGGAGTTGTGCTACTTCGCCATCGCGGCCATTCAGCACAAGGAGGCGGC
ACTAGCGAGGGAGAGGTTGGAGAAGGCGCTGGAGAAGCTCAAGGGGCTGT
GA

Synonyms

Publications