jgi.p|Nanoce1779_2|605899, mRNA_9262 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605899
Unique NamemRNA_9262
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length534
Alignment locationscaffold_33:131003..131536 +

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Properties
Property NameValue
TranscriptId605985
TrackFilteredModels2
ProteinId605899
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:131003..131536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605899gene_9262Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605899mRNA_9262-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9262CDS_9262Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9262 ID=mRNA_9262|Name=jgi.p|Nanoce1779_2|605899|organism=Nannochloropsis oceanica|type=mRNA|length=534bp
CCCTTGTTAAGCTTTCATCACAATTCTGGATCGTGGACATGCTGGCCTCT
CGGTCGCCTTCCTTTTCCGCAAGCTCACTTTCTCCTTGGACGAGGTAAGC
AGCGTCGTCGCTACAATGCGCTCTTTCGACACTCTGGATGTTACCACCAA
CAATCGTCCTTTCTACTCCTTTAATGTCCTTTCGATTTAACCACGCGTTC
CTCATTTTGGCCACGGTATCAAGCCGTTGTCGTGCTGGCGTGGCCGTGCA
GGGTGAATGTTTACGCTTCCCGCCTTGTGGCTTCCTTTTCCCTGGTGAGA
CAAGGGTCTTGGTAGGCTGCTTATCGGAGTGTATGGACTATGGACAATGA
CGGCGTGTAAATTAGGGTGGCATGACTTTTATGAGGAGGCCGCTGACATA
TCGGAAGAGGCCGCCGAAATGGGGTGGGAGGTTGAATTTTTTGCTTGGGG
ATTTCGTCTGGCTTTGATTTAGCCAGGCGATGGCGGCGTAGCATCAGGTA
GTCTTGCCATGGCCCTATATACATTCTGAGCTGT
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protein sequence of jgi.p|Nanoce1779_2|605899

>mRNA_9262-protein ID=mRNA_9262-protein|Name=jgi.p|Nanoce1779_2|605899|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MLPPTIVLSTPLMSFRFNHAFLILATVSSRCRAGVAVQGECLRFPPCGFL
FPGETRVLVGCLSECMDYGQ*
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mRNA from alignment at scaffold_33:131003..131536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9262 ID=mRNA_9262|Name=jgi.p|Nanoce1779_2|605899|organism=Nannochloropsis oceanica|type=mRNA|length=534bp|location=Sequence derived from alignment at scaffold_33:131003..131536+ (Nannochloropsis oceanica)
CCCTTGTTAAGCTTTCATCACAATTCTGGATCGTGGACATGCTGGCCTCT
CGGTCGCCTTCCTTTTCCGCAAGCTCACTTTCTCCTTGGACGAGGTAAGC
AGCGTCGTCGCTACAATGCGCTCTTTCGACACTCTGGATGTTACCACCAA
CAATCGTCCTTTCTACTCCTTTAATGTCCTTTCGATTTAACCACGCGTTC
CTCATTTTGGCCACGGTATCAAGCCGTTGTCGTGCTGGCGTGGCCGTGCA
GGGTGAATGTTTACGCTTCCCGCCTTGTGGCTTCCTTTTCCCTGGTGAGA
CAAGGGTCTTGGTAGGCTGCTTATCGGAGTGTATGGACTATGGACAATGA
CGGCGTGTAAATTAGGGTGGCATGACTTTTATGAGGAGGCCGCTGACATA
TCGGAAGAGGCCGCCGAAATGGGGTGGGAGGTTGAATTTTTTGCTTGGGG
ATTTCGTCTGGCTTTGATTTAGCCAGGCGATGGCGGCGTAGCATCAGGTA
GTCTTGCCATGGCCCTATATACATTCTGAGCTGT
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Coding sequence (CDS) from alignment at scaffold_33:131003..131536+

>mRNA_9262 ID=mRNA_9262|Name=jgi.p|Nanoce1779_2|605899|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_33:131003..131536+ (Nannochloropsis oceanica)
ATGTTACCACCAACAATCGTCCTTTCTACTCCTTTAATGTCCTTTCGATT
TAACCACGCGTTCCTCATTTTGGCCACGGTATCAAGCCGTTGTCGTGCTG
GCGTGGCCGTGCAGGGTGAATGTTTACGCTTCCCGCCTTGTGGCTTCCTT
TTCCCTGGTGAGACAAGGGTCTTGGTAGGCTGCTTATCGGAGTGTATGGA
CTATGGACAATGA
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Synonyms
Publications