jgi.p|Nanoce1779_2|605895, mRNA_9260 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605895
Unique NamemRNA_9260
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length367
Alignment locationscaffold_33:129267..129633 -

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Properties
Property NameValue
TranscriptId605981
TrackFilteredModels2
ProteinId605895
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:129267..129633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605895gene_9260Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605895mRNA_9260-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9260CDS_9260Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9260 ID=mRNA_9260|Name=jgi.p|Nanoce1779_2|605895|organism=Nannochloropsis oceanica|type=mRNA|length=367bp
CAGGCATTTGCAGTATCAGCGCGTGCTTTATCGAGAAGACTGCTAAAATC
TCACAGATACAAGCGCCATCAGCAACGCACTGAATGAAAGGCAGTCGGGG
TCCTTGGGCCGTACTAGGGGCCGTCTCGGTATTCGCAGGTGGAGCCATCG
TCTACGTGCATTACGACCAGCAAAAGCAGCGAACGGACATGCGAAAGCTT
ATCTTGGAAGAAAAGGAGCGGGAGCGGCAGGAACGCATGGAGGCGTATGC
ACACAATCAACAAAGAGTGGAGGTAGTCGCAGCAGCAGCAGCAACAGCAG
CAGCAGCAGTACCATCATCTAGCCAGGGCTTAAGAAGGTAGCACGCGGCA
CGTTCTCCGAAGGGGGG
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protein sequence of jgi.p|Nanoce1779_2|605895

>mRNA_9260-protein ID=mRNA_9260-protein|Name=jgi.p|Nanoce1779_2|605895|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MKGSRGPWAVLGAVSVFAGGAIVYVHYDQQKQRTDMRKLILEEKERERQE
RMEAYAHNQQRVEVVAAAAATAAAAVPSSSQGLRR*
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mRNA from alignment at scaffold_33:129267..129633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9260 ID=mRNA_9260|Name=jgi.p|Nanoce1779_2|605895|organism=Nannochloropsis oceanica|type=mRNA|length=367bp|location=Sequence derived from alignment at scaffold_33:129267..129633- (Nannochloropsis oceanica)
CAGGCATTTGCAGTATCAGCGCGTGCTTTATCGAGAAGACTGCTAAAATC
TCACAGATACAAGCGCCATCAGCAACGCACTGAATGAAAGGCAGTCGGGG
TCCTTGGGCCGTACTAGGGGCCGTCTCGGTATTCGCAGGTGGAGCCATCG
TCTACGTGCATTACGACCAGCAAAAGCAGCGAACGGACATGCGAAAGCTT
ATCTTGGAAGAAAAGGAGCGGGAGCGGCAGGAACGCATGGAGGCGTATGC
ACACAATCAACAAAGAGTGGAGGTAGTCGCAGCAGCAGCAGCAACAGCAG
CAGCAGCAGTACCATCATCTAGCCAGGGCTTAAGAAGGTAGCACGCGGCA
CGTTCTCCGAAGGGGGG
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Coding sequence (CDS) from alignment at scaffold_33:129267..129633-

>mRNA_9260 ID=mRNA_9260|Name=jgi.p|Nanoce1779_2|605895|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_33:129267..129633- (Nannochloropsis oceanica)
ATGAAAGGCAGTCGGGGTCCTTGGGCCGTACTAGGGGCCGTCTCGGTATT
CGCAGGTGGAGCCATCGTCTACGTGCATTACGACCAGCAAAAGCAGCGAA
CGGACATGCGAAAGCTTATCTTGGAAGAAAAGGAGCGGGAGCGGCAGGAA
CGCATGGAGGCGTATGCACACAATCAACAAAGAGTGGAGGTAGTCGCAGC
AGCAGCAGCAACAGCAGCAGCAGCAGTACCATCATCTAGCCAGGGCTTAA
GAAGGTAG
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Synonyms
Publications