|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 574770 |
| Track | FilteredModels2 |
| ProteinId | 574684 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:768347..769952 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_926 ID=mRNA_926|Name=jgi.p|Nanoce1779_2|574684|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp
CGTCTCTTTACGCATCTTCTACTTACCCGGACATCTCTCCTTCCCCAACA
ACTCACATGCGCTCCAGTTTCCCCGGCGACAAATACACACACCTCCATCA
CAACATCCACATTCTCCTCCACAGATGTCTCCCCTCTTCTCACCTCTTCT
ACACTTTCTGTAACAACTTCTCTGACTACTGCAAGTCCTTTCGAGCACAC
ACCCCGCAAAAGTGCGGGATTTCCAGCTAGTCGTCGTTGAAGGAAGAGGT
TCGACGTCTATTTTCCAAAGCAATACGACAACCTACTCACTCGTGCTCTG
CGCAGGCTTTTACAAACAAGGGCTCTGGCTTGCTTGTATCGCTCCGCTCT
GAAAGGAGCAAGTATTTTGCAGCTATCCACCCGTCACAGATCATCATTCA
TCATTACCAATCGATCATCACCGTCATGACATAGTCGAAATGTGCTCTCC
CTTACGAAGTACCCTGCTCCACCCATCCACCCGTTGCAGACCCAAAATAC
AGGCAGGAGACGTGATAGCCGCAGCATCATGAAGCTTGTCCTAGTCTCTC
TCTTGCTCAATGCTGCACACGCCTTTTTCTTGGCGCCACCCAGTAAGCCC
CTGCAACGCTTGTATTCTACGGCGGGCGCTATGTTGGGCTCCGCCACTCA
CCCGCTGGCCAACCGCAAAATCCAGTTCTCCGACAACGAGGACGACACAG
ATCGTGTAACCCAAGTCCAACTGCTGGCGGATGGGAGTATGAGCTTCATA
TCGGACAGCACCATGGCAGTGGATGTGAAGGGGAGCTGGAAACCCGCCGA
AGGTGGGAAGGTTTCTTTCCTGGTGGAGCGCTTTTACGCGACCAGTGCGA
TGGATAGCAAGTACAGCATGGTCCGTATATATGAGGGGAAAATCACCATC
TCAGGGAAAGCAATTTTAGGAGAGGGTAAAATAGAACAAGAAAAATACGA
TGCCCTTTTCCCGTGCGGCTTCTTTTCCCTTATTAGCGTGGATGATGGGC
CGGATGATTTTTTTGAAAAGTTAGGGCCGGGGCACACGGTGATGCCGGGC
GTGGATCAGTAAGATGACGAATAAAGGCTGATGTGCGGGTGGTGACTTTC
GATGCATGCATGTGGATGTGTATTTTCAGTGAGGCATAGGGAGAGGCCTA
CACAAGGTCAAGGGCATCCTGGTGGATCATCCATCTGATATTTTGTTTTT
CCATTTTACATTTTTACAGGCCCCGTCATGTGTGTTTCCCCTGTCAATGT
GAAGGAAGTTGTCATTGTCACTGTATGAGTTAGTGGAAAGAAAAAAGGAA
CACACACAAAGAAGATGAGCAAGTAATCGAGTGCTTAA back to topprotein sequence of jgi.p|Nanoce1779_2|574684 >mRNA_926-protein ID=mRNA_926-protein|Name=jgi.p|Nanoce1779_2|574684|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MKLVLVSLLLNAAHAFFLAPPSKPLQRLYSTAGAMLGSATHPLANRKIQF
SDNEDDTDRVTQVQLLADGSMSFISDSTMAVDVKGSWKPAEGGKVSFLVE
RFYATSAMDSKYSMVRIYEGKITISGKAILGEGKIEQEKYDALFPCGFFS
LISVDDGPDDFFEKLGPGHTVMPGVDQ* back to topmRNA from alignment at scaffold_2:768347..769952+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_926 ID=mRNA_926|Name=jgi.p|Nanoce1779_2|574684|organism=Nannochloropsis oceanica|type=mRNA|length=1606bp|location=Sequence derived from alignment at scaffold_2:768347..769952+ (Nannochloropsis oceanica)
CGTCTCTTTACGCATCTTCTACTTACCCGGACATCTCTCCTTCCCCAACA
ACTCACATGCGCTCCAGTTTCCCCGGCGACAAATACACACACCTCCATCA
CAACATCCACATTCTCCTCCACAGATGTCTCCCCTCTTCTCACCTCTTCT
ACACTTTCTGTAACAACTTCTCTGACTACTGCAAGTCCTTTCGAGCACAC
ACCCCGCAAAAGTGCGGGATTTCCAGCTAGTCGTCGTTGAAGGAAGAGGT
TCGACGTCTATTTTCCAAAGCAATACGACAACCTACTCACTCGTGCTCTG
CGCAGGCTTTTACAAACAAGGGCTCTGGCTTGCTTGTATCGCTCCGCTCT
GAAAGGAGCAAGTATTTTGCAGCTATCCACCCGTCACAGATCATCATTCA
TCATTACCAATCGATCATCACCGTCATGACATAGTCGAAATGTGCTCTCC
CTTACGAAGTACCCTGCTCCACCCATCCACCCGTTGCAGACCCAAAATAC
AGGCAGGAGACGTGATAGCCGCAGCATCATGAAGCTTGTCCTAGTCTCTC
TCTTGCTCAATGCTGCACACGCCTTTTTCTTGGCGCCACCCAGTAAGCCC
CTGCAACGCTTGTATTCTACGGCGGGCGCTATGTTGGGCTCCGCCACTCA
CCCGCTGGCCAACCGCAAAATCCAGTTCTCCGACAACGAGGACGAGTAAG
TAATGCCCAATGAAGGGCTCGAGGTGTATTGTGGGCGTGCGAAGACAGTA
GTTTGCTGGGTAGTTTTTTTGTGAAACGCCCAGGCCATAGATTTACATCC
TTTGGGTCAAGCCATTTCATTTTCTACCCTCTTCCTGTCTATCATCTCGT
ATATATACATTTCTCATCACTTTATTCAATCGCATTTTCGCCTTTCCATC
CCATCCTTCATATTCTCATCTCCTTCATTCCTCCCCCCCCCCCCCGCATC
ATCTCACCCACAGCACAGATCGTGTAACCCAAGTCCAACTGCTGGCGGAT
GGGAGTATGAGCTTCATATCGGACAGCACCATGGCAGTGGATGTGAAGGG
GAGCTGGAAACCCGCCGAAGGTGGGAAGGTTTCTTTCCTGGTGGAGCGCT
TTTACGCGACCAGTGCGATGGATAGCAAGTACAGCATGGTCCGTATATAT
GAGGGGAAAATCACCATCTCAGGGAAAGCAATTTTAGGAGAGGGTAAAAT
AGAACAAGAAAAATACGATGCCCTTTTCCCGTGCGGCTTCTTTTCCCTTA
TTAGCGTGGATGATGGGCCGGATGATTTTTTTGAAAAGTTAGGGCCGGGG
CACACGGTGATGCCGGGCGTGGATCAGTAAGATGACGAATAAAGGCTGAT
GTGCGGGTGGTGACTTTCGATGCATGCATGTGGATGTGTATTTTCAGTGA
GGCATAGGGAGAGGCCTACACAAGGTCAAGGGCATCCTGGTGGATCATCC
ATCTGATATTTTGTTTTTCCATTTTACATTTTTACAGGCCCCGTCATGTG
TGTTTCCCCTGTCAATGTGAAGGAAGTTGTCATTGTCACTGTATGAGTTA
GTGGAAAGAAAAAAGGAACACACACAAAGAAGATGAGCAAGTAATCGAGT
GCTTAA back to topCoding sequence (CDS) from alignment at scaffold_2:768347..769952+ >mRNA_926 ID=mRNA_926|Name=jgi.p|Nanoce1779_2|574684|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_2:768347..769952+ (Nannochloropsis oceanica)
ATGAAGCTTGTCCTAGTCTCTCTCTTGCTCAATGCTGCACACGCCTTTTT
CTTGGCGCCACCCAGTAAGCCCCTGCAACGCTTGTATTCTACGGCGGGCG
CTATGTTGGGCTCCGCCACTCACCCGCTGGCCAACCGCAAAATCCAGTTC
TCCGACAACGAGGACGACACAGATCGTGTAACCCAAGTCCAACTGCTGGC
GGATGGGAGTATGAGCTTCATATCGGACAGCACCATGGCAGTGGATGTGA
AGGGGAGCTGGAAACCCGCCGAAGGTGGGAAGGTTTCTTTCCTGGTGGAG
CGCTTTTACGCGACCAGTGCGATGGATAGCAAGTACAGCATGGTCCGTAT
ATATGAGGGGAAAATCACCATCTCAGGGAAAGCAATTTTAGGAGAGGGTA
AAATAGAACAAGAAAAATACGATGCCCTTTTCCCGTGCGGCTTCTTTTCC
CTTATTAGCGTGGATGATGGGCCGGATGATTTTTTTGAAAAGTTAGGGCC
GGGGCACACGGTGATGCCGGGCGTGGATCAGTAAATGAAGCTTGTCCTAG
TCTCTCTCTTGCTCAATGCTGCACACGCCTTTTTCTTGGCGCCACCCAGT
AAGCCCCTGCAACGCTTGTATTCTACGGCGGGCGCTATGTTGGGCTCCGC
CACTCACCCGCTGGCCAACCGCAAAATCCAGTTCTCCGACAACGAGGACG
ACACAGATCGTGTAACCCAAGTCCAACTGCTGGCGGATGGGAGTATGAGC
TTCATATCGGACAGCACCATGGCAGTGGATGTGAAGGGGAGCTGGAAACC
CGCCGAAGGTGGGAAGGTTTCTTTCCTGGTGGAGCGCTTTTACGCGACCA
GTGCGATGGATAGCAAGTACAGCATGGTCCGTATATATGAGGGGAAAATC
ACCATCTCAGGGAAAGCAATTTTAGGAGAGGGTAAAATAGAACAAGAAAA
ATACGATGCCCTTTTCCCGTGCGGCTTCTTTTCCCTTATTAGCGTGGATG
ATGGGCCGGATGATTTTTTTGAAAAGTTAGGGCCGGGGCACACGGTGATG
CCGGGCGTGGATCAGTAA back to top
|