jgi.p|Nanoce1779_2|605882, mRNA_9256 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605882
Unique NamemRNA_9256
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1153
Alignment locationscaffold_33:117981..119288 +

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Properties
Property NameValue
TranscriptId605968
TrackFilteredModels2
ProteinId605882
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:117981..119288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605882gene_9256Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605882mRNA_9256-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9256CDS_9256Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9256 ID=mRNA_9256|Name=jgi.p|Nanoce1779_2|605882|organism=Nannochloropsis oceanica|type=mRNA|length=1153bp
ACAGCCGACTCAGATAGTACACAAAATAACCATGGCATCCTCCACCGTCA
CCATGCAGCCAGACACTCGCATTGCCCTCGTCACCGGCGCGGACCATGGC
CTGGGCCTGGAATACTGCAAGCAGCTCTCCAACCAAGGCTACCTCGTGGT
GGGCACGGCCAAGGACGCTGTTAATGCTACGGAGTTAAATGATCTTGCCA
GGGAGAGCCAAAATAAAGTGTTTGTGCAGCAGCTGGACCAGACTAAGGTG
GATGAGATCAAGAACTTGACCGAGGCCCTGCGCACCCGCAACTACCGACT
CGACCTGCTGATTCTCAACGCCGGTGTGGCTGAAAAGGAGCACCCGAACG
TCAATGCCAGCCAACTAGAGCATAAGGAGCTGATGGATATGTTTGAAGTT
AACGTATGCGGCACTGCTAGCGTTATTAAGCATATGCTGCCTTTGGTGTT
GGAGTCGCACGAAAAGAAAGTGATTGGCGTGACGACCAATATGGCATCAT
TGGAGGAGGCAACCGCGGATAAGCCTTATATCTCGGCTGGATATCGCATC
ACTAAAGCGGCGGAGAATATGCGTGAGTGATGAGGGGATGGAGAGAAGGG
AGGAATCGGGTAGTTGAATAATTTCTGTGTAATTTTAATTCTTTGTTTTT
ATTTGTCTTCTCGGTGACATGCTGGGGGTTAGGAAGAGGATTTTGCGTTT
TGAGGCAGTGAAGAAGAGAGGTGGGACGGTACTTGTTCATTTTTCTTAAT
ATTCTTGATTCATCCGATTTGCTTCCTACCGTTCAAGTTATTCACATGCC
AATTGCCTTAGAACGAAGGACATTCTTTCTCGCTGCATGAGCCACTTTCT
TTAAACATTCTGAACCCCACCTCACCCTCCCGTCCGCGCTATCTTTCCTC
CAGTCTTCCGTGTCTGGTCCTGCGACCCCCGCCGCCAAGGACGTGACCTT
CCTCCTGGTGCATCCCGGGCACGTCAAGACGCAAATGGGGGAGGCGGGCG
GACGGAAGGCCCCCATGACGGCGGAGGAGGGCGTGCAGCAGTCTCTGTCG
AATGTGATTTTGCGTTGTGGGAAGCAGGACTCGGGCCACTTTTTCAATTA
TGACGGGACAGAGATTTCTTTGTAAGTGTCTTAGTGTCTAGGACGGAGGG
AGG
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protein sequence of jgi.p|Nanoce1779_2|605882

>mRNA_9256-protein ID=mRNA_9256-protein|Name=jgi.p|Nanoce1779_2|605882|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MASSTVTMQPDTRIALVTGADHGLGLEYCKQLSNQGYLVVGTAKDAVNAT
ELNDLARESQNKVFVQQLDQTKVDEIKNLTEALRTRNYRLDLLILNAGVA
EKEHPNVNASQLEHKELMDMFEVNVCGTASVIKHMLPLVLESHEKKVIGV
TTNMASLEEATADKPYISAGYRITKAAENMRE*
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mRNA from alignment at scaffold_33:117981..119288+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9256 ID=mRNA_9256|Name=jgi.p|Nanoce1779_2|605882|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at scaffold_33:117981..119288+ (Nannochloropsis oceanica)
ACAGCCGACTCAGATAGTACACAAAATAACCATGGCATCCTCCACCGTCA
CCATGCAGCCAGACACTCGCATTGCCCTCGTCACCGGCGCGGACCATGGC
CTGGGCCTGGAATACTGCAAGCAGCTCTCCAACCAAGGCTACCTCGTGGT
GGGCACGGCCAAGGACGCTGTTAATGCTACGGAGTTAAATGATCTTGCCA
GGGAGAGCCAAAATAAAGTGTTTGTGCAGCAGCTGGACCAGACTAAGGTG
GATGAGATCAAGAACTTGACCGAGGCCCTGCGCACCCGCAACTACCGACT
CGAGTAAGTATTTGGGGAGGAATGAGGAGGAGGGAGGCAAGTCACGGGGG
AAAAAATGACTTACGTCATTACCCTACCCATTTTGTGGACCAACATAATT
CCGTTCGCTCACATCTCTTCCTCCCTCTCTCCCTTTCTTCCTCCCTCCCC
TTCCACAGCCTGCTGATTCTCAACGCCGGTGTGGCTGAAAAGGAGCACCC
GAACGTCAATGCCAGCCAACTAGAGCATAAGGAGCTGATGGATATGTTTG
AAGTTAACGTATGCGGCACTGCTAGCGTTATTAAGCATATGCTGCCTTTG
GTGTTGGAGTCGCACGAAAAGAAAGTGATTGGCGTGACGACCAATATGGC
ATCATTGGAGGAGGCAACCGCGGATAAGCCTTATATCTCGGCTGGATATC
GCATCACTAAAGCGGCGGAGAATATGCGTGAGTGATGAGGGGATGGAGAG
AAGGGAGGAATCGGGTAGTTGAATAATTTCTGTGTAATTTTAATTCTTTG
TTTTTATTTGTCTTCTCGGTGACATGCTGGGGGTTAGGAAGAGGATTTTG
CGTTTTGAGGCAGTGAAGAAGAGAGGTGGGACGGTACTTGTTCATTTTTC
TTAATATTCTTGATTCATCCGATTTGCTTCCTACCGTTCAAGTTATTCAC
ATGCCAATTGCCTTAGAACGAAGGACATTCTTTCTCGCTGCATGAGCCAC
TTTCTTTAAACATTCTGAACCCCACCTCACCCTCCCGTCCGCGCTATCTT
TCCTCCAGTCTTCCGTGTCTGGTCCTGCGACCCCCGCCGCCAAGGACGTG
ACCTTCCTCCTGGTGCATCCCGGGCACGTCAAGACGCAAATGGGGGAGGC
GGGCGGACGGAAGGCCCCCATGACGGCGGAGGAGGGCGTGCAGCAGTCTC
TGTCGAATGTGATTTTGCGTTGTGGGAAGCAGGACTCGGGCCACTTTTTC
AATTATGACGGGACAGAGATTTCTTTGTAAGTGTCTTAGTGTCTAGGACG
GAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_33:117981..119288+

>mRNA_9256 ID=mRNA_9256|Name=jgi.p|Nanoce1779_2|605882|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_33:117981..119288+ (Nannochloropsis oceanica)
ATGGCATCCTCCACCGTCACCATGCAGCCAGACACTCGCATTGCCCTCGT
CACCGGCGCGGACCATGGCCTGGGCCTGGAATACTGCAAGCAGCTCTCCA
ACCAAGGCTACCTCGTGGTGGGCACGGCCAAGGACGCTGTTAATGCTACG
GAGTTAAATGATCTTGCCAGGGAGAGCCAAAATAAAGTGTTTGTGCAGCA
GCTGGACCAGACTAAGGTGGATGAGATCAAGAACTTGACCGAGGCCCTGC
GCACCCGCAACTACCGACTCGACCTGCTGATTCTCAACGCCGGTGTGGCT
GAAAAGGAGCACCCGAACGTCAATGCCAGCCAACTAGAGCATAAGGAGCT
GATGGATATGTTTGAAGTTAACGTATGCGGCACTGCTAGCGTTATTAAGC
ATATGCTGCCTTTGGTGTTGGAGTCGCACGAAAAGAAAGTGATTGGCGTG
ACGACCAATATGGCATCATTGGAGGAGGCAACCGCGGATAAGCCTTATAT
CTCGGCTGGATATCGCATCACTAAAGCGGCGGAGAATATGCGTGAGTGAA
TGGCATCCTCCACCGTCACCATGCAGCCAGACACTCGCATTGCCCTCGTC
ACCGGCGCGGACCATGGCCTGGGCCTGGAATACTGCAAGCAGCTCTCCAA
CCAAGGCTACCTCGTGGTGGGCACGGCCAAGGACGCTGTTAATGCTACGG
AGTTAAATGATCTTGCCAGGGAGAGCCAAAATAAAGTGTTTGTGCAGCAG
CTGGACCAGACTAAGGTGGATGAGATCAAGAACTTGACCGAGGCCCTGCG
CACCCGCAACTACCGACTCGACCTGCTGATTCTCAACGCCGGTGTGGCTG
AAAAGGAGCACCCGAACGTCAATGCCAGCCAACTAGAGCATAAGGAGCTG
ATGGATATGTTTGAAGTTAACGTATGCGGCACTGCTAGCGTTATTAAGCA
TATGCTGCCTTTGGTGTTGGAGTCGCACGAAAAGAAAGTGATTGGCGTGA
CGACCAATATGGCATCATTGGAGGAGGCAACCGCGGATAAGCCTTATATC
TCGGCTGGATATCGCATCACTAAAGCGGCGGAGAATATGCGTGAGTGA
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Synonyms
Publications