jgi.p|Nanoce1779_2|605881, mRNA_9255 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605881
Unique NamemRNA_9255
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1692
Alignment locationscaffold_33:115835..117526 -

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Properties
Property NameValue
TranscriptId605967
TrackFilteredModels2
ProteinId605881
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:115835..117526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605881gene_9255Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605881mRNA_9255-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9255CDS_9255Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9255 ID=mRNA_9255|Name=jgi.p|Nanoce1779_2|605881|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp
AGGCAGGCAGGCACTTTCTGTGGCCGGCGGTCGTTTATCCGGCGATTGAT
ATCACGTCAATTGCACCAGAGGCAAGACCATCACTGCATCCACCTGCATA
CAGCAATTCATTATTATGCACCGCGCTGCCATCGCCCTGTTCTTGCCTTT
GGTACTGCTGGCGGGGCCTGCCCTGTCGTTCTCCACCTCCCTTTCCCTAC
CTACAGCCGGGCGCCATGCCCCTCCCCCTCCCTCGACTGTGACCACGCGG
ATGGCAGCCTCCACAAATGTCGTCCCTCCCCCTCCCCCCGCGGAAGCCGC
GCAATTCGCCCGAAATATTATGTCCACTTATGGGCGTTATCCCATCACAA
TGGTTAAAGGGCAAGGGGTCAAGCTGTGGGACTCGACGGGGAAAGAGTAC
CTTGATTTCGTCGCGGGCATCTCTACGTGCTGCTTGGGTCATGCAGACGC
CCGGCTCATCGAAGCTGTCACCGCACAACTAGGAAGATTACACCATGTCT
CCAACCTCTACTACACTGCCGAGCAAGGCAAGCTGGGAGAGTGGCTCGTC
CAGAATTCCGTGGCGGACAAAGCTTTTTTTTGCAATTCCGGGGCGGAGGC
AAACGAGGCTGCGATCAAACTTGCGCGCAAACATGCTCATGAGAAGCTCG
GGTTGGATTTCCCAGTTATTATCACAGCCAAGGCGTCGTTTCATGGACGA
ACGCTGGCGGCTATTACGGCGACGGGCCAGCCTAAGTACCAGAAGGGGTT
CGAGCCTTTGGTGCCCGGTTTCGAGTACGTGGAATACAACGATGCCAAAG
CGCTCAAGAAGATGGTTAGGCGCATTAACGCCTTAGGGCGACTCCGTGGA
TTGGTACCGGGGAAAGGACGGAAGGGTGTCGCGGCCATAATGATGGAAGC
GCTGCAAGGCGAAGGGGGCATCCGGCCGGGCACACAAGAGTTCTTCAAGG
TCGCGCGCGAGCTCTGCGACGAGACAGGTGCGTTGCTTATGATCGATGAA
GTCCAAACTGGAGTCGGCCGCACGGGGAAGTTGTGGGGGTACGAGAACCT
GGGAGGGATTGAGCCGGACGTTTTCACGTCCGCCAAGGCCTTGGGTGCGG
GGGTCCCCATCGGCGCGATGATGTGCAAGGAACGCGCCAATGTCTTCAAG
CCCGGCGACCATGCTTCCACCTTTGGTGGGAACCCTCTTGCCTGTGCAGC
GGGATTGGCGGTGGCCAAGGCCATTGAGAAAGACGGGTTGGTCACCAATG
CTGCCACCCGCGGCGAGCAAATCCGCGGTTTGTTGAAGAAGTTGCAAGAA
AAGTATCCCATGCTCATTCAGGAGGTCCGGGGCTGGGGCTTGATTAACGG
CGTCGAGCTGACGGCTTCCTCGGGCTTGCAAGCGGCCAAGGTGGTGCAGG
CGTGCATCGATGACGGCCTGTTGCTGGTGGCGGCCGGCACAACTGTGGTG
AGGTTTGTCCCTCCCTTGATTGTGACGGAGGCGGAGGTGGAGGAGGCAGT
GCGGAGGTTTGGAGCGGCTTTGGAAAAGGTCTCCAAGGCGTAAAGGGTCA
TGTCACCAAAACATTTCTCGTATGTGTTCGAGGGGGGGTGGAAAAACAGA
GAAGGGGAAACGGGACAATGCCTTCTCTATATAAGATATCACTGGCAATT
GAAAGAAAGAAGCAAAGAGGAATACACGAGCGTTAGAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|605881

>mRNA_9255-protein ID=mRNA_9255-protein|Name=jgi.p|Nanoce1779_2|605881|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MHRAAIALFLPLVLLAGPALSFSTSLSLPTAGRHAPPPPSTVTTRMAAST
NVVPPPPPAEAAQFARNIMSTYGRYPITMVKGQGVKLWDSTGKEYLDFVA
GISTCCLGHADARLIEAVTAQLGRLHHVSNLYYTAEQGKLGEWLVQNSVA
DKAFFCNSGAEANEAAIKLARKHAHEKLGLDFPVIITAKASFHGRTLAAI
TATGQPKYQKGFEPLVPGFEYVEYNDAKALKKMVRRINALGRLRGLVPGK
GRKGVAAIMMEALQGEGGIRPGTQEFFKVARELCDETGALLMIDEVQTGV
GRTGKLWGYENLGGIEPDVFTSAKALGAGVPIGAMMCKERANVFKPGDHA
STFGGNPLACAAGLAVAKAIEKDGLVTNAATRGEQIRGLLKKLQEKYPML
IQEVRGWGLINGVELTASSGLQAAKVVQACIDDGLLLVAAGTTVVRFVPP
LIVTEAEVEEAVRRFGAALEKVSKA*
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mRNA from alignment at scaffold_33:115835..117526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9255 ID=mRNA_9255|Name=jgi.p|Nanoce1779_2|605881|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp|location=Sequence derived from alignment at scaffold_33:115835..117526- (Nannochloropsis oceanica)
AGGCAGGCAGGCACTTTCTGTGGCCGGCGGTCGTTTATCCGGCGATTGAT
ATCACGTCAATTGCACCAGAGGCAAGACCATCACTGCATCCACCTGCATA
CAGCAATTCATTATTATGCACCGCGCTGCCATCGCCCTGTTCTTGCCTTT
GGTACTGCTGGCGGGGCCTGCCCTGTCGTTCTCCACCTCCCTTTCCCTAC
CTACAGCCGGGCGCCATGCCCCTCCCCCTCCCTCGACTGTGACCACGCGG
ATGGCAGCCTCCACAAATGTCGTCCCTCCCCCTCCCCCCGCGGAAGCCGC
GCAATTCGCCCGAAATATTATGTCCACTTATGGGCGTTATCCCATCACAA
TGGTTAAAGGGCAAGGGGTCAAGCTGTGGGACTCGACGGGGAAAGAGTAC
CTTGATTTCGTCGCGGGCATCTCTACGTGCTGCTTGGGTCATGCAGACGC
CCGGCTCATCGAAGCTGTCACCGCACAACTAGGAAGATTACACCATGTCT
CCAACCTCTACTACACTGCCGAGCAAGGCAAGCTGGGAGAGTGGCTCGTC
CAGAATTCCGTGGCGGACAAAGCTTTTTTTTGCAATTCCGGGGCGGAGGC
AAACGAGGCTGCGATCAAACTTGCGCGCAAACATGCTCATGAGAAGCTCG
GGTTGGATTTCCCAGTTATTATCACAGCCAAGGCGTCGTTTCATGGACGA
ACGCTGGCGGCTATTACGGCGACGGGCCAGCCTAAGTACCAGAAGGGGTT
CGAGCCTTTGGTGCCCGGTTTCGAGTACGTGGAATACAACGATGCCAAAG
CGCTCAAGAAGATGGTTAGGCGCATTAACGCCTTAGGGCGACTCCGTGGA
TTGGTACCGGGGAAAGGACGGAAGGGTGTCGCGGCCATAATGATGGAAGC
GCTGCAAGGCGAAGGGGGCATCCGGCCGGGCACACAAGAGTTCTTCAAGG
TCGCGCGCGAGCTCTGCGACGAGACAGGTGCGTTGCTTATGATCGATGAA
GTCCAAACTGGAGTCGGCCGCACGGGGAAGTTGTGGGGGTACGAGAACCT
GGGAGGGATTGAGCCGGACGTTTTCACGTCCGCCAAGGCCTTGGGTGCGG
GGGTCCCCATCGGCGCGATGATGTGCAAGGAACGCGCCAATGTCTTCAAG
CCCGGCGACCATGCTTCCACCTTTGGTGGGAACCCTCTTGCCTGTGCAGC
GGGATTGGCGGTGGCCAAGGCCATTGAGAAAGACGGGTTGGTCACCAATG
CTGCCACCCGCGGCGAGCAAATCCGCGGTTTGTTGAAGAAGTTGCAAGAA
AAGTATCCCATGCTCATTCAGGAGGTCCGGGGCTGGGGCTTGATTAACGG
CGTCGAGCTGACGGCTTCCTCGGGCTTGCAAGCGGCCAAGGTGGTGCAGG
CGTGCATCGATGACGGCCTGTTGCTGGTGGCGGCCGGCACAACTGTGGTG
AGGTTTGTCCCTCCCTTGATTGTGACGGAGGCGGAGGTGGAGGAGGCAGT
GCGGAGGTTTGGAGCGGCTTTGGAAAAGGTCTCCAAGGCGTAAAGGGTCA
TGTCACCAAAACATTTCTCGTATGTGTTCGAGGGGGGGTGGAAAAACAGA
GAAGGGGAAACGGGACAATGCCTTCTCTATATAAGATATCACTGGCAATT
GAAAGAAAGAAGCAAAGAGGAATACACGAGCGTTAGAAAAAA
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Coding sequence (CDS) from alignment at scaffold_33:115835..117526-

>mRNA_9255 ID=mRNA_9255|Name=jgi.p|Nanoce1779_2|605881|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_33:115835..117526- (Nannochloropsis oceanica)
ATGCACCGCGCTGCCATCGCCCTGTTCTTGCCTTTGGTACTGCTGGCGGG
GCCTGCCCTGTCGTTCTCCACCTCCCTTTCCCTACCTACAGCCGGGCGCC
ATGCCCCTCCCCCTCCCTCGACTGTGACCACGCGGATGGCAGCCTCCACA
AATGTCGTCCCTCCCCCTCCCCCCGCGGAAGCCGCGCAATTCGCCCGAAA
TATTATGTCCACTTATGGGCGTTATCCCATCACAATGGTTAAAGGGCAAG
GGGTCAAGCTGTGGGACTCGACGGGGAAAGAGTACCTTGATTTCGTCGCG
GGCATCTCTACGTGCTGCTTGGGTCATGCAGACGCCCGGCTCATCGAAGC
TGTCACCGCACAACTAGGAAGATTACACCATGTCTCCAACCTCTACTACA
CTGCCGAGCAAGGCAAGCTGGGAGAGTGGCTCGTCCAGAATTCCGTGGCG
GACAAAGCTTTTTTTTGCAATTCCGGGGCGGAGGCAAACGAGGCTGCGAT
CAAACTTGCGCGCAAACATGCTCATGAGAAGCTCGGGTTGGATTTCCCAG
TTATTATCACAGCCAAGGCGTCGTTTCATGGACGAACGCTGGCGGCTATT
ACGGCGACGGGCCAGCCTAAGTACCAGAAGGGGTTCGAGCCTTTGGTGCC
CGGTTTCGAGTACGTGGAATACAACGATGCCAAAGCGCTCAAGAAGATGG
TTAGGCGCATTAACGCCTTAGGGCGACTCCGTGGATTGGTACCGGGGAAA
GGACGGAAGGGTGTCGCGGCCATAATGATGGAAGCGCTGCAAGGCGAAGG
GGGCATCCGGCCGGGCACACAAGAGTTCTTCAAGGTCGCGCGCGAGCTCT
GCGACGAGACAGGTGCGTTGCTTATGATCGATGAAGTCCAAACTGGAGTC
GGCCGCACGGGGAAGTTGTGGGGGTACGAGAACCTGGGAGGGATTGAGCC
GGACGTTTTCACGTCCGCCAAGGCCTTGGGTGCGGGGGTCCCCATCGGCG
CGATGATGTGCAAGGAACGCGCCAATGTCTTCAAGCCCGGCGACCATGCT
TCCACCTTTGGTGGGAACCCTCTTGCCTGTGCAGCGGGATTGGCGGTGGC
CAAGGCCATTGAGAAAGACGGGTTGGTCACCAATGCTGCCACCCGCGGCG
AGCAAATCCGCGGTTTGTTGAAGAAGTTGCAAGAAAAGTATCCCATGCTC
ATTCAGGAGGTCCGGGGCTGGGGCTTGATTAACGGCGTCGAGCTGACGGC
TTCCTCGGGCTTGCAAGCGGCCAAGGTGGTGCAGGCGTGCATCGATGACG
GCCTGTTGCTGGTGGCGGCCGGCACAACTGTGGTGAGGTTTGTCCCTCCC
TTGATTGTGACGGAGGCGGAGGTGGAGGAGGCAGTGCGGAGGTTTGGAGC
GGCTTTGGAAAAGGTCTCCAAGGCGTAA
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Synonyms
Publications