jgi.p|Nanoce1779_2|569052, mRNA_9254 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|569052
Unique NamemRNA_9254
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length396
Alignment locationscaffold_33:113987..114725 -

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Properties
Property NameValue
TranscriptId569138
TrackFilteredModels2
ProteinId569052
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:113987..114725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569052gene_9254Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569052mRNA_9254-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9254CDS_9254Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9254 ID=mRNA_9254|Name=jgi.p|Nanoce1779_2|569052|organism=Nannochloropsis oceanica|type=mRNA|length=396bp
ATGATGCTGCCGGCGGAGGAAGGAGGCGATGTCGGAGGGAGGGGGCGTGA
GGTGCTGCGCGAGGACGAGGAGGTCTCGAAGGAGGACGAGGCCGTTATGG
AGTTCCCCGAGTATGGCCAAGAGGAGGAGGCGTTGCAGGAGGAGAAGGAG
GAAGAGGAAGAGGAAGAAGAGGAGGAGGAGGAGGGGGTGAAGAACCCTAG
GGAGAGGAGGAGGGCGACCAGGGTGGCCGCGAGGGCGTGGACGAGGCCCA
CCACCCCAAGGGACCAGACGGCCTTCTCTTTCTCTTCCAAGAAGGAAGAA
GGGGGGGAAGAAGAGGGCTCTCCTGTGCTGACCGAGGAGGAGGACGAAGA
CGAGGAGAAGGAGCCGAGGGAGGAGGGGACGACCGTGAGTCGATAA
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protein sequence of jgi.p|Nanoce1779_2|569052

>mRNA_9254-protein ID=mRNA_9254-protein|Name=jgi.p|Nanoce1779_2|569052|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MMLPAEEGGDVGGRGREVLREDEEVSKEDEAVMEFPEYGQEEEALQEEKE
EEEEEEEEEEEGVKNPRERRRATRVAARAWTRPTTPRDQTAFSFSSKKEE
GGEEEGSPVLTEEEDEDEEKEPREEGTTVSR*
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mRNA from alignment at scaffold_33:113987..114725-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9254 ID=mRNA_9254|Name=jgi.p|Nanoce1779_2|569052|organism=Nannochloropsis oceanica|type=mRNA|length=739bp|location=Sequence derived from alignment at scaffold_33:113987..114725- (Nannochloropsis oceanica)
ATGATGCTGCCGGCGGAGGAAGGAGGCGATGTCGGAGGGAGGGGGCGTGA
GGTGCTGCGCGAGGACGAGGAGGTCTCGAAGGAGGACGAGGCCGTTATGG
AGTTCCCCGAGTATGGCCAAGAGGAGGAGGCGTTGCAGGTGGATGGTGTT
GGGGGAGGGGAAGAAGGAAAGCAGGGAATCCGTTGTTGGCCACCACGAGG
GGGAGGGAGGAGAGGAGGAGGGGGAGGGGGAGGGGGATTTGGTGGTGTGG
AGGAGGGTGGCAGTGTAGAAGAGGATGAGGAGGGTCTGCCAAGCTAGGGA
GATTGGGTGTCGTCGTTGAAGCCTTTGCTTGATTTGGGCCAAGAGGTTGA
AGGCATAGTACCCGGAGGAGACGAGGAGCTGGACGGTGAGCAGGGGGGGA
AACCCTCCCTCCCTCCCGACGTCGCCCTCCTCGGCGAAATCGGAGGCACT
GAAGGTCCGATGCTGCTGTCTGTCTGGGCAGGAGGAGAAGGAGGAAGAGG
AAGAGGAAGAAGAGGAGGAGGAGGAGGGGGTGAAGAACCCTAGGGAGAGG
AGGAGGGCGACCAGGGTGGCCGCGAGGGCGTGGACGAGGCCCACCACCCC
AAGGGACCAGACGGCCTTCTCTTTCTCTTCCAAGAAGGAAGAAGGGGGGG
AAGAAGAGGGCTCTCCTGTGCTGACCGAGGAGGAGGACGAAGACGAGGAG
AAGGAGCCGAGGGAGGAGGGGACGACCGTGAGTCGATAA
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Coding sequence (CDS) from alignment at scaffold_33:113987..114725-

>mRNA_9254 ID=mRNA_9254|Name=jgi.p|Nanoce1779_2|569052|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_33:113987..114725- (Nannochloropsis oceanica)
GAGGAGAAGGAGGAAGAGGAAGAGGAAGAAGAGGAGGAGGAGGAGGGGGT
GAAGAACCCTAGGGAGAGGAGGAGGGCGACCAGGGTGGCCGCGAGGGCGT
GGACGAGGCCCACCACCCCAAGGGACCAGACGGCCTTCTCTTTCTCTTCC
AAGAAGGAAGAAGGGGGGGAAGAAGAGGGCTCTCCTGTGCTGACCGAGGA
GGAGGACGAAGACGAGGAGAAGGAGCCGAGGGAGGAGGGGACGACCGTGA
GTCGATAAATGATGCTGCCGGCGGAGGAAGGAGGCGATGTCGGAGGGAGG
GGGCGTGAGGTGCTGCGCGAGGACGAGGAGGTCTCGAAGGAGGACGAGGC
CGTTATGGAGTTCCCCGAGTATGGCCAAGAGGAGGAGGCGTTGCAGGAGG
AGAAGGAGGAAGAGGAAGAGGAAGAAGAGGAGGAGGAGGAGGGGGTGAAG
AACCCTAGGGAGAGGAGGAGGGCGACCAGGGTGGCCGCGAGGGCGTGGAC
GAGGCCCACCACCCCAAGGGACCAGACGGCCTTCTCTTTCTCTTCCAAGA
AGGAAGAAGGGGGGGAAGAAGAGGGCTCTCCTGTGCTGACCGAGGAGGAG
GACGAAGACGAGGAGAAGGAGCCGAGGGAGGAGGGGACGACCGTGAGTCG
ATAAATGATGCTGCCGGCGGAGGAAGGAGGCGATGTCGGAGGGAGGGGGC
GTGAGGTGCTGCGCGAGGACGAGGAGGTCTCGAAGGAGGACGAGGCCGTT
ATGGAGTTCCCCGAGTATGGCCAAGAGGAGGAGGCGTTGCAG
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Synonyms
Publications