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Properties
| Property Name | Value |
|---|
| TranscriptId | 605949 |
| Track | FilteredModels2 |
| ProteinId | 605863 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_33 | supercontig | scaffold_33:102837..105252 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9250 ID=mRNA_9250|Name=jgi.p|Nanoce1779_2|605863|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp
CTGCGGCTGCTCCTATCCCTACCTCTGCCTTCCAAAGCGAGACCCGCGTT
ATGGGCAACACTCGAGCAGTCCTTCGCAATGACTGGACTCGCGCGGAGAT
CCAGGCCCTGTACGACCAGCCATTCATCGAGCTCCTCTATCAAGCCGCAA
CCATCCATCGCATGTACTGGAACCCCCAAGAAGTCCAGCAGTGCACCCTC
CTCTCCATCAAGACCGGCGGCTGCACCGAAGACTGCAAATACTGCTCCCA
GTCCGTGCGCTACAAGACACACGTCAAACCCACCCCTCAGATGAAGGTGG
CTGAAGTCGTGGAGGCTGCCAAGCGAGCCAAGGCCGCGGGGAGCACCCGG
TTCTGCATGGGGGCAGCATGGCGGGAGCTGGGGAATAAGAAGAATGCCTT
TGGGCACATTTTGGATATGGTTCGCGAGGTGAACGGCATGGGCCTCGAAG
TGTGCGCCACCCTAGGGATGCTGAACCCCGAGCAAGCCCGGCAGCTCAAG
GCCGCGGGTCTGACGGCCTACAACCACAACCTGGACACTTCGCCTGAGTA
CTACCCCAAGGTCATCACCACCAGGTCTTACGAGGACCGCCTCAATACTC
TCTCGGCCGTGCGTGACGCCGGTCTCAACGTCTGCTCCGGGGGCATCCTG
GGGCTCGGAGAGGCGGACAGCGACCGCATCGGCCTCTTGCATACCCTCGC
CACCCTCCCCGCGCACCCGGAATCGGTGCCCATCAACGCATTGGTGGCCG
TGGAAGGCACGCCCATGCAGGAGAGCCACGCGCCCTCGATCTGGGACATG
GGCCGCATGATTGCTACGGCGCGCATCGTCATGCCCAAGACGATGGTGCG
TCTCTCGGCCGGACGCTTGTCCTTCAGCAAGGGCGAGCAGGCGCTCATGT
TTTTTGCAGGCGCAAACTCGATTTTCAATGGTGACGTGTTATTGACGACC
CCGAACCCAGAGTTTAGTGCCGATATGGATCTGTTTGAGAAGATCGGATT
GGTGGGGAAGAAGGCCCATGTCCCTGCCAAGGAAACGCCCTATGAAGTGC
AAAGACTTCAGCAGGAGGAAGCCGAAGCTGAGGCGAACACGGAAGTAAAG
TGGATGGAGGAGGAGGGTGGGAGGGATGGAGGAGTGGTAGTCACGAGGAG
TCGAGCTCAGATGGCGTAGAGAGGGCGAGAGGGTTCTATTTGTTGTGAAG
GTATGTCTGGTTGGAATGTGTGCTGCGTGTGCGTGTTTAGGCGCTTGCCG
GAATATGAGCCTTAGTCGGTTGGCTCAACGCGAATAAAAAGCATTAGCGA
AAGATCTGCTTGTCTGCGTGGGTAAAGGAAGTGTGGTACTAGTGAAATGG
ACTCAAAACGAGAAACAGAGTGATGGAGGGAAAATGTAACTGAAAATGCG
CCCATAGCCACGTGCGTGTGTGTGCGAGAGTGAGTGAGCGAGTATGTGTG
AGTGAGTGGTGGTAGGGGGTGGAGGGTATAAGGAGACGAGTAACTTTTTT
TAAAAAAGAATAGAATAATGGACGGCTAAGAGCAAGAAAATGCGCCTCTG
GTGGACCTGGTTTTGTTGTTGATACATAAAAGGGGGGATGGGGAGGT back to topprotein sequence of jgi.p|Nanoce1779_2|605863 >mRNA_9250-protein ID=mRNA_9250-protein|Name=jgi.p|Nanoce1779_2|605863|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MGNTRAVLRNDWTRAEIQALYDQPFIELLYQAATIHRMYWNPQEVQQCTL
LSIKTGGCTEDCKYCSQSVRYKTHVKPTPQMKVAEVVEAAKRAKAAGSTR
FCMGAAWRELGNKKNAFGHILDMVREVNGMGLEVCATLGMLNPEQARQLK
AAGLTAYNHNLDTSPEYYPKVITTRSYEDRLNTLSAVRDAGLNVCSGGIL
GLGEADSDRIGLLHTLATLPAHPESVPINALVAVEGTPMQESHAPSIWDM
GRMIATARIVMPKTMVRLSAGRLSFSKGEQALMFFAGANSIFNGDVLLTT
PNPEFSADMDLFEKIGLVGKKAHVPAKETPYEVQRLQQEEAEAEANTEVK
WMEEEGGRDGGVVVTRSRAQMA* back to topmRNA from alignment at scaffold_33:102837..105252- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9250 ID=mRNA_9250|Name=jgi.p|Nanoce1779_2|605863|organism=Nannochloropsis oceanica|type=mRNA|length=2416bp|location=Sequence derived from alignment at scaffold_33:102837..105252- (Nannochloropsis oceanica)
CTGCGGCTGCTCCTATCCCTACCTCTGCCTTCCAAAGCGAGACCCGCGTT
ATGGGCAACACTCGAGCAGTCCTTCGCAATGTACGTTTGAATAGACTGGC
GAGGTTCTCATCTCATATTTTCTTTCTCATAGATTTACAATCGCTTCTTT
TCCCCCTTCCTCCACTCCCTCCCTTAATATCAGGACTGGACTCGCGCGGA
GATCCAGGCCCTGTACGACCAGCCATTCATCGAGCTCCTCTATCAAGCCG
CAACCATCCATCGCATGTACTGGAACCCCCAAGAAGTCCAGCAGTGCACC
CTCCTCTCCATCAAGACCGGCGGCTGCACCGAAGACTGCAAATACTGCTC
CCAGTCCGTGCGCTACAAGACACACGTCAAACCCACCCCTCAGGTACACG
CCACGCCCTCCCTCCCCCCTCTGTTTCCTTAATTGGCTCTTCGGGTACAT
GCCCTCCCTTCCTCCCTCTGTTCGTTTTAATCACCCCTTAGGTGCACGCC
CTCTCCCCCTCCCTCTATCTGTCTTTTCCTCTCGTGCCTGCATGGCGTCC
AGCTCCTAAATCCCGTCAAGTTCAACCCCTCCTGCTTCCTTTCCATCCTT
CTCTCCCTCCCTCCTCTCAGATGAAGGTGGCTGAAGTCGTGGAGGCTGCC
AAGCGAGCCAAGGCCGCGGGGAGCACCCGGTTCTGCATGGGGGCAGCATG
GCGGGAGCTGGGGAATAAGAAGAATGCCTTTGGGCACATTTTGGATATGG
TTCGCGAGGTAAGGGGATGAAAAGGGACGATGTGAGGAGTCGGATGGTGG
GTCCAGGGTGTCTCACTGGCGGACTCGGCGAGGAGCTGGAGGCGGTGGAT
AGGGAGGAGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAA
AGAGGTGGGTACCTAATCGAGAGAGATTGTGTGAATCGTGTGTTCATTGT
CTCCTGTGTCTCGCATGGATTGACAGGTGAACGGCATGGGCCTCGAAGTG
TGCGCCACCCTAGGGATGCTGAACCCCGAGCAAGCCCGGCAGCTCAAGGC
CGCGGGTCTGACGGCCTACAACCACAACCTGGACACTTCGCCTGAGTACT
ACCCCAAGGTCATCACCACCAGGTGGGGGGGGGAGGGAGGGAGGGGTAGG
AAGGAGGGGGGGGTGGAGGGAGGGGGGGAAGGGAGGGCAATGGAACCGCT
GCTGGGACACAATCTGATCTGTCGGGCGCCACGTTGTGAATGACGCATAA
CCCGAATGTTCAACCCCGGAGCCATCAAACCATCTTCGGCAGCGAATAAC
AATAACAATAACGATCTTCTCTCTACATCTTAATCGAATAACAATAACAA
AAACGATTCTTCTCCCTTCCACCCTTATTACCACGCCCTCCAGGTCTTAC
GAGGACCGCCTCAATACTCTCTCGGCCGTGCGTGACGCCGGTCTCAACGT
CTGCTCCGGGGGCATCCTGGGGCTCGGAGAGGCGGACAGCGACCGCATCG
GCCTCTTGCATACCCTCGCCACCCTCCCCGCGCACCCGGAATCGGTGCCC
ATCAACGCATTGGTGGCCGTGGAAGGCACGCCCATGCAGGAGAGCCACGC
GCCCTCGATCTGGGACATGGGCCGCATGATTGCTACGGCGCGCATCGTCA
TGCCCAAGACGATGGTGCGTCTCTCGGCCGGACGCTTGTCCTTCAGCAAG
GGCGAGCAGGCGCTCATGTTTTTTGCAGGCGCAAACTCGATTTTCAATGG
TGACGTGTTATTGACGACCCCGAACCCAGAGTTTAGTGCCGATATGGATC
TGTTTGAGAAGATCGGATTGGTGGGGAAGAAGGCCCATGTCCCTGCCAAG
GAAACGCCCTATGAAGTGCAAAGACTTCAGCAGGAGGAAGCCGAAGCTGA
GGCGAACACGGAAGTAAAGTGGATGGAGGAGGAGGGTGGGAGGGATGGAG
GAGTGGTAGTCACGAGGAGTCGAGCTCAGATGGCGTAGAGAGGGCGAGAG
GGTTCTATTTGTTGTGAAGGTATGTCTGGTTGGAATGTGTGCTGCGTGTG
CGTGTTTAGGCGCTTGCCGGAATATGAGCCTTAGTCGGTTGGCTCAACGC
GAATAAAAAGCATTAGCGAAAGATCTGCTTGTCTGCGTGGGTAAAGGAAG
TGTGGTACTAGTGAAATGGACTCAAAACGAGAAACAGAGTGATGGAGGGA
AAATGTAACTGAAAATGCGCCCATAGCCACGTGCGTGTGTGTGCGAGAGT
GAGTGAGCGAGTATGTGTGAGTGAGTGGTGGTAGGGGGTGGAGGGTATAA
GGAGACGAGTAACTTTTTTTAAAAAAGAATAGAATAATGGACGGCTAAGA
GCAAGAAAATGCGCCTCTGGTGGACCTGGTTTTGTTGTTGATACATAAAA
GGGGGGATGGGGAGGT back to topCoding sequence (CDS) from alignment at scaffold_33:102837..105252- >mRNA_9250 ID=mRNA_9250|Name=jgi.p|Nanoce1779_2|605863|organism=Nannochloropsis oceanica|type=CDS|length=5595bp|location=Sequence derived from alignment at scaffold_33:102837..105252- (Nannochloropsis oceanica)
GTCTTACGAGGACCGCCTCAATACTCTCTCGGCCGTGCGTGACGCCGGTC
TCAACGTCTGCTCCGGGGGCATCCTGGGGCTCGGAGAGGCGGACAGCGAC
CGCATCGGCCTCTTGCATACCCTCGCCACCCTCCCCGCGCACCCGGAATC
GGTGCCCATCAACGCATTGGTGGCCGTGGAAGGCACGCCCATGCAGGAGA
GCCACGCGCCCTCGATCTGGGACATGGGCCGCATGATTGCTACGGCGCGC
ATCGTCATGCCCAAGACGATGGTGCGTCTCTCGGCCGGACGCTTGTCCTT
CAGCAAGGGCGAGCAGGCGCTCATGTTTTTTGCAGGCGCAAACTCGATTT
TCAATGGTGACGTGTTATTGACGACCCCGAACCCAGAGTTTAGTGCCGAT
ATGGATCTGTTTGAGAAGATCGGATTGGTGGGGAAGAAGGCCCATGTCCC
TGCCAAGGAAACGCCCTATGAAGTGCAAAGACTTCAGCAGGAGGAAGCCG
AAGCTGAGGCGAACACGGAAGTAAAGTGGATGGAGGAGGAGGGTGGGAGG
GATGGAGGAGTGGTAGTCACGAGGAGTCGAGCTCAGATGGCGTAGGTGAA
CGGCATGGGCCTCGAAGTGTGCGCCACCCTAGGGATGCTGAACCCCGAGC
AAGCCCGGCAGCTCAAGGCCGCGGGTCTGACGGCCTACAACCACAACCTG
GACACTTCGCCTGAGTACTACCCCAAGGTCATCACCACCAGATGAAGGTG
GCTGAAGTCGTGGAGGCTGCCAAGCGAGCCAAGGCCGCGGGGAGCACCCG
GTTCTGCATGGGGGCAGCATGGCGGGAGCTGGGGAATAAGAAGAATGCCT
TTGGGCACATTTTGGATATGGTTCGCGAGGACTGGACTCGCGCGGAGATC
CAGGCCCTGTACGACCAGCCATTCATCGAGCTCCTCTATCAAGCCGCAAC
CATCCATCGCATGTACTGGAACCCCCAAGAAGTCCAGCAGTGCACCCTCC
TCTCCATCAAGACCGGCGGCTGCACCGAAGACTGCAAATACTGCTCCCAG
TCCGTGCGCTACAAGACACACGTCAAACCCACCCCTCAGATGGGCAACAC
TCGAGCAGTCCTTCGCAATGTCTTACGAGGACCGCCTCAATACTCTCTCG
GCCGTGCGTGACGCCGGTCTCAACGTCTGCTCCGGGGGCATCCTGGGGCT
CGGAGAGGCGGACAGCGACCGCATCGGCCTCTTGCATACCCTCGCCACCC
TCCCCGCGCACCCGGAATCGGTGCCCATCAACGCATTGGTGGCCGTGGAA
GGCACGCCCATGCAGGAGAGCCACGCGCCCTCGATCTGGGACATGGGCCG
CATGATTGCTACGGCGCGCATCGTCATGCCCAAGACGATGGTGCGTCTCT
CGGCCGGACGCTTGTCCTTCAGCAAGGGCGAGCAGGCGCTCATGTTTTTT
GCAGGCGCAAACTCGATTTTCAATGGTGACGTGTTATTGACGACCCCGAA
CCCAGAGTTTAGTGCCGATATGGATCTGTTTGAGAAGATCGGATTGGTGG
GGAAGAAGGCCCATGTCCCTGCCAAGGAAACGCCCTATGAAGTGCAAAGA
CTTCAGCAGGAGGAAGCCGAAGCTGAGGCGAACACGGAAGTAAAGTGGAT
GGAGGAGGAGGGTGGGAGGGATGGAGGAGTGGTAGTCACGAGGAGTCGAG
CTCAGATGGCGTAGGTGAACGGCATGGGCCTCGAAGTGTGCGCCACCCTA
GGGATGCTGAACCCCGAGCAAGCCCGGCAGCTCAAGGCCGCGGGTCTGAC
GGCCTACAACCACAACCTGGACACTTCGCCTGAGTACTACCCCAAGGTCA
TCACCACCAGATGAAGGTGGCTGAAGTCGTGGAGGCTGCCAAGCGAGCCA
AGGCCGCGGGGAGCACCCGGTTCTGCATGGGGGCAGCATGGCGGGAGCTG
GGGAATAAGAAGAATGCCTTTGGGCACATTTTGGATATGGTTCGCGAGGA
CTGGACTCGCGCGGAGATCCAGGCCCTGTACGACCAGCCATTCATCGAGC
TCCTCTATCAAGCCGCAACCATCCATCGCATGTACTGGAACCCCCAAGAA
GTCCAGCAGTGCACCCTCCTCTCCATCAAGACCGGCGGCTGCACCGAAGA
CTGCAAATACTGCTCCCAGTCCGTGCGCTACAAGACACACGTCAAACCCA
CCCCTCAGATGGGCAACACTCGAGCAGTCCTTCGCAATGTCTTACGAGGA
CCGCCTCAATACTCTCTCGGCCGTGCGTGACGCCGGTCTCAACGTCTGCT
CCGGGGGCATCCTGGGGCTCGGAGAGGCGGACAGCGACCGCATCGGCCTC
TTGCATACCCTCGCCACCCTCCCCGCGCACCCGGAATCGGTGCCCATCAA
CGCATTGGTGGCCGTGGAAGGCACGCCCATGCAGGAGAGCCACGCGCCCT
CGATCTGGGACATGGGCCGCATGATTGCTACGGCGCGCATCGTCATGCCC
AAGACGATGGTGCGTCTCTCGGCCGGACGCTTGTCCTTCAGCAAGGGCGA
GCAGGCGCTCATGTTTTTTGCAGGCGCAAACTCGATTTTCAATGGTGACG
TGTTATTGACGACCCCGAACCCAGAGTTTAGTGCCGATATGGATCTGTTT
GAGAAGATCGGATTGGTGGGGAAGAAGGCCCATGTCCCTGCCAAGGAAAC
GCCCTATGAAGTGCAAAGACTTCAGCAGGAGGAAGCCGAAGCTGAGGCGA
ACACGGAAGTAAAGTGGATGGAGGAGGAGGGTGGGAGGGATGGAGGAGTG
GTAGTCACGAGGAGTCGAGCTCAGATGGCGTAGGTGAACGGCATGGGCCT
CGAAGTGTGCGCCACCCTAGGGATGCTGAACCCCGAGCAAGCCCGGCAGC
TCAAGGCCGCGGGTCTGACGGCCTACAACCACAACCTGGACACTTCGCCT
GAGTACTACCCCAAGGTCATCACCACCAGATGAAGGTGGCTGAAGTCGTG
GAGGCTGCCAAGCGAGCCAAGGCCGCGGGGAGCACCCGGTTCTGCATGGG
GGCAGCATGGCGGGAGCTGGGGAATAAGAAGAATGCCTTTGGGCACATTT
TGGATATGGTTCGCGAGGACTGGACTCGCGCGGAGATCCAGGCCCTGTAC
GACCAGCCATTCATCGAGCTCCTCTATCAAGCCGCAACCATCCATCGCAT
GTACTGGAACCCCCAAGAAGTCCAGCAGTGCACCCTCCTCTCCATCAAGA
CCGGCGGCTGCACCGAAGACTGCAAATACTGCTCCCAGTCCGTGCGCTAC
AAGACACACGTCAAACCCACCCCTCAGATGGGCAACACTCGAGCAGTCCT
TCGCAATGTCTTACGAGGACCGCCTCAATACTCTCTCGGCCGTGCGTGAC
GCCGGTCTCAACGTCTGCTCCGGGGGCATCCTGGGGCTCGGAGAGGCGGA
CAGCGACCGCATCGGCCTCTTGCATACCCTCGCCACCCTCCCCGCGCACC
CGGAATCGGTGCCCATCAACGCATTGGTGGCCGTGGAAGGCACGCCCATG
CAGGAGAGCCACGCGCCCTCGATCTGGGACATGGGCCGCATGATTGCTAC
GGCGCGCATCGTCATGCCCAAGACGATGGTGCGTCTCTCGGCCGGACGCT
TGTCCTTCAGCAAGGGCGAGCAGGCGCTCATGTTTTTTGCAGGCGCAAAC
TCGATTTTCAATGGTGACGTGTTATTGACGACCCCGAACCCAGAGTTTAG
TGCCGATATGGATCTGTTTGAGAAGATCGGATTGGTGGGGAAGAAGGCCC
ATGTCCCTGCCAAGGAAACGCCCTATGAAGTGCAAAGACTTCAGCAGGAG
GAAGCCGAAGCTGAGGCGAACACGGAAGTAAAGTGGATGGAGGAGGAGGG
TGGGAGGGATGGAGGAGTGGTAGTCACGAGGAGTCGAGCTCAGATGGCGT
AGGTGAACGGCATGGGCCTCGAAGTGTGCGCCACCCTAGGGATGCTGAAC
CCCGAGCAAGCCCGGCAGCTCAAGGCCGCGGGTCTGACGGCCTACAACCA
CAACCTGGACACTTCGCCTGAGTACTACCCCAAGGTCATCACCACCAGAT
GAAGGTGGCTGAAGTCGTGGAGGCTGCCAAGCGAGCCAAGGCCGCGGGGA
GCACCCGGTTCTGCATGGGGGCAGCATGGCGGGAGCTGGGGAATAAGAAG
AATGCCTTTGGGCACATTTTGGATATGGTTCGCGAGGACTGGACTCGCGC
GGAGATCCAGGCCCTGTACGACCAGCCATTCATCGAGCTCCTCTATCAAG
CCGCAACCATCCATCGCATGTACTGGAACCCCCAAGAAGTCCAGCAGTGC
ACCCTCCTCTCCATCAAGACCGGCGGCTGCACCGAAGACTGCAAATACTG
CTCCCAGTCCGTGCGCTACAAGACACACGTCAAACCCACCCCTCAGATGG
GCAACACTCGAGCAGTCCTTCGCAATGTCTTACGAGGACCGCCTCAATAC
TCTCTCGGCCGTGCGTGACGCCGGTCTCAACGTCTGCTCCGGGGGCATCC
TGGGGCTCGGAGAGGCGGACAGCGACCGCATCGGCCTCTTGCATACCCTC
GCCACCCTCCCCGCGCACCCGGAATCGGTGCCCATCAACGCATTGGTGGC
CGTGGAAGGCACGCCCATGCAGGAGAGCCACGCGCCCTCGATCTGGGACA
TGGGCCGCATGATTGCTACGGCGCGCATCGTCATGCCCAAGACGATGGTG
CGTCTCTCGGCCGGACGCTTGTCCTTCAGCAAGGGCGAGCAGGCGCTCAT
GTTTTTTGCAGGCGCAAACTCGATTTTCAATGGTGACGTGTTATTGACGA
CCCCGAACCCAGAGTTTAGTGCCGATATGGATCTGTTTGAGAAGATCGGA
TTGGTGGGGAAGAAGGCCCATGTCCCTGCCAAGGAAACGCCCTATGAAGT
GCAAAGACTTCAGCAGGAGGAAGCCGAAGCTGAGGCGAACACGGAAGTAA
AGTGGATGGAGGAGGAGGGTGGGAGGGATGGAGGAGTGGTAGTCACGAGG
AGTCGAGCTCAGATGGCGTAGGTGAACGGCATGGGCCTCGAAGTGTGCGC
CACCCTAGGGATGCTGAACCCCGAGCAAGCCCGGCAGCTCAAGGCCGCGG
GTCTGACGGCCTACAACCACAACCTGGACACTTCGCCTGAGTACTACCCC
AAGGTCATCACCACCAGATGAAGGTGGCTGAAGTCGTGGAGGCTGCCAAG
CGAGCCAAGGCCGCGGGGAGCACCCGGTTCTGCATGGGGGCAGCATGGCG
GGAGCTGGGGAATAAGAAGAATGCCTTTGGGCACATTTTGGATATGGTTC
GCGAGGACTGGACTCGCGCGGAGATCCAGGCCCTGTACGACCAGCCATTC
ATCGAGCTCCTCTATCAAGCCGCAACCATCCATCGCATGTACTGGAACCC
CCAAGAAGTCCAGCAGTGCACCCTCCTCTCCATCAAGACCGGCGGCTGCA
CCGAAGACTGCAAATACTGCTCCCAGTCCGTGCGCTACAAGACACACGTC
AAACCCACCCCTCAGATGGGCAACACTCGAGCAGTCCTTCGCAAT back to top
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