jgi.p|Nanoce1779_2|574681, mRNA_925 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574681
Unique NamemRNA_925
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length292
Alignment locationscaffold_2:767420..767711 -

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Properties
Property NameValue
TranscriptId574767
TrackFilteredModels2
ProteinId574681
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:767420..767711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574681gene_925Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574681mRNA_925-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_925CDS_925Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_925 ID=mRNA_925|Name=jgi.p|Nanoce1779_2|574681|organism=Nannochloropsis oceanica|type=mRNA|length=292bp
GCACGGACGGTGGCGGAAGTCCAGGCGCGTGCGTGCGATGCGGCGCCGCA
AGCGGTCGGGGGGCTGGTGTAAATGGGGCGGGGGGGATGTCTTCTTGTGG
TGCGCGGGCTTGTCCGGCTTCAAGACCAGCGCGGATTTGTTGGGCAGCAT
GTGTGGCATGTTCTTTGCGAATGGCTTCTCGATATGCGGCTTGACGGTGC
TGTTTGGCTTGGCGGTGAGCTTGCTGTCGGTGCTGCTGAGATGTAGTATG
TCACTGCGCCTCTTTGATCGCATAGGTTAGCTCTTACAAGGT
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protein sequence of jgi.p|Nanoce1779_2|574681

>mRNA_925-protein ID=mRNA_925-protein|Name=jgi.p|Nanoce1779_2|574681|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MRRRKRSGGWCKWGGGDVFLWCAGLSGFKTSADLLGSMCGMFFANGFSIC
GLTVLFGLAVSLLSVLLRCSMSLRLFDRI
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mRNA from alignment at scaffold_2:767420..767711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_925 ID=mRNA_925|Name=jgi.p|Nanoce1779_2|574681|organism=Nannochloropsis oceanica|type=mRNA|length=292bp|location=Sequence derived from alignment at scaffold_2:767420..767711- (Nannochloropsis oceanica)
GCACGGACGGTGGCGGAAGTCCAGGCGCGTGCGTGCGATGCGGCGCCGCA
AGCGGTCGGGGGGCTGGTGTAAATGGGGCGGGGGGGATGTCTTCTTGTGG
TGCGCGGGCTTGTCCGGCTTCAAGACCAGCGCGGATTTGTTGGGCAGCAT
GTGTGGCATGTTCTTTGCGAATGGCTTCTCGATATGCGGCTTGACGGTGC
TGTTTGGCTTGGCGGTGAGCTTGCTGTCGGTGCTGCTGAGATGTAGTATG
TCACTGCGCCTCTTTGATCGCATAGGTTAGCTCTTACAAGGT
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Coding sequence (CDS) from alignment at scaffold_2:767420..767711-

>mRNA_925 ID=mRNA_925|Name=jgi.p|Nanoce1779_2|574681|organism=Nannochloropsis oceanica|type=CDS|length=238bp|location=Sequence derived from alignment at scaffold_2:767420..767711- (Nannochloropsis oceanica)
ATGCGGCGCCGCAAGCGGTCGGGGGGCTGGTGTAAATGGGGCGGGGGGGA
TGTCTTCTTGTGGTGCGCGGGCTTGTCCGGCTTCAAGACCAGCGCGGATT
TGTTGGGCAGCATGTGTGGCATGTTCTTTGCGAATGGCTTCTCGATATGC
GGCTTGACGGTGCTGTTTGGCTTGGCGGTGAGCTTGCTGTCGGTGCTGCT
GAGATGTAGTATGTCACTGCGCCTCTTTGATCGCATAG
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Synonyms
Publications