jgi.p|Nanoce1779_2|605857, mRNA_9248 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605857
Unique NamemRNA_9248
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length901
Alignment locationscaffold_33:98806..99706 +

Link to JBrowse

Properties
Property NameValue
TranscriptId605943
TrackFilteredModels2
ProteinId605857
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:98806..99706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605857gene_9248Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605857mRNA_9248-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9248CDS_9248Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9248 ID=mRNA_9248|Name=jgi.p|Nanoce1779_2|605857|organism=Nannochloropsis oceanica|type=mRNA|length=901bp
ACAGTGACAGCGCAGGCACTGAACACCTCAACCCGTCTCCTACCAGAAGC
GAGGATGGCAGCCCCGGCGCGCCACGAAGAGGAAGACTTGGATTTTGACG
AGGAAAATGAAGCTGCGCCTGCAACAGCTCCTGCCCCTCCCTCTTCCCCT
CCCTCCGCTGCCCCTTCTTCCCCACCAAACAAAAAGACAAGGACAAGCAA
GGAACAGTCGGATGAGAACAGGAACAGCAGTGGAATGCCTAAAGTCAAAG
GACGTGGCCACCAGAGCGGCGAAGATAAAAGAGGGGGAGGGGGAGGGCAC
TACGAGAGCAGAGAAGACGAGGAAGGAGAAGGGGAGATAGGCGACCCTGC
GCGTTCTGTGGAAGGGTGGGTGTTGATCGTCACGGGCTTGCACGAAGAGG
CACAAGAGGATGAGGTTGTGGATCGGTTTGGGGAGTTTGGTGAGGTGAGG
AATGTGCAGATGAACCTTGATCGACGCACGGGCTTTGTGAAGGGTTATGC
GCTAGTGGAGTTTTTGAAGAAAAATGAAGCGGAAAAGGCAAAGGAGGGAA
TGGATAAGGAAGAGATGTATGGGAAGGAGGTGAGAGTGGATTGGGCGTTT
GTCCATGGAGGGAGAGGAGGTGGAAGGAGGGGGGGAGGACGACGTTAAAG
TAAGGGTAACGAGAGGGAGGGGAATGCGCAAAGAGGCTGGAAGAGGGAGA
GGAAGGTGGTAAGGAGACCGTGAAACAAAAAGCACAGGTGGTAGTGTCTT
GTTGTCCTCACTGCTGTTTGTTCCCCTCTTATTTGTACCGCAGTGAGGAA
GACAGGGAGGGAGGTTTTCTCGGGTAGGGACCGAGGGAAGGAAAGAGAAA
AGGGTGAGGAGCGCGAGGGGCGAAAGGAAGGAAGAAGAACATGGGCAGGA
A
back to top

protein sequence of jgi.p|Nanoce1779_2|605857

>mRNA_9248-protein ID=mRNA_9248-protein|Name=jgi.p|Nanoce1779_2|605857|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MAAPARHEEEDLDFDEENEAAPATAPAPPSSPPSAAPSSPPNKKTRTSKE
QSDENRNSSGMPKVKGRGHQSGEDKRGGGGGHYESREDEEGEGEIGDPAR
SVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYAL
VEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHGGRGGGRRGGGRR*
back to top

mRNA from alignment at scaffold_33:98806..99706+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9248 ID=mRNA_9248|Name=jgi.p|Nanoce1779_2|605857|organism=Nannochloropsis oceanica|type=mRNA|length=901bp|location=Sequence derived from alignment at scaffold_33:98806..99706+ (Nannochloropsis oceanica)
ACAGTGACAGCGCAGGCACTGAACACCTCAACCCGTCTCCTACCAGAAGC
GAGGATGGCAGCCCCGGCGCGCCACGAAGAGGAAGACTTGGATTTTGACG
AGGAAAATGAAGCTGCGCCTGCAACAGCTCCTGCCCCTCCCTCTTCCCCT
CCCTCCGCTGCCCCTTCTTCCCCACCAAACAAAAAGACAAGGACAAGCAA
GGAACAGTCGGATGAGAACAGGAACAGCAGTGGAATGCCTAAAGTCAAAG
GACGTGGCCACCAGAGCGGCGAAGATAAAAGAGGGGGAGGGGGAGGGCAC
TACGAGAGCAGAGAAGACGAGGAAGGAGAAGGGGAGATAGGCGACCCTGC
GCGTTCTGTGGAAGGGTGGGTGTTGATCGTCACGGGCTTGCACGAAGAGG
CACAAGAGGATGAGGTTGTGGATCGGTTTGGGGAGTTTGGTGAGGTGAGG
AATGTGCAGATGAACCTTGATCGACGCACGGGCTTTGTGAAGGGTTATGC
GCTAGTGGAGTTTTTGAAGAAAAATGAAGCGGAAAAGGCAAAGGAGGGAA
TGGATAAGGAAGAGATGTATGGGAAGGAGGTGAGAGTGGATTGGGCGTTT
GTCCATGGAGGGAGAGGAGGTGGAAGGAGGGGGGGAGGACGACGTTAAAG
TAAGGGTAACGAGAGGGAGGGGAATGCGCAAAGAGGCTGGAAGAGGGAGA
GGAAGGTGGTAAGGAGACCGTGAAACAAAAAGCACAGGTGGTAGTGTCTT
GTTGTCCTCACTGCTGTTTGTTCCCCTCTTATTTGTACCGCAGTGAGGAA
GACAGGGAGGGAGGTTTTCTCGGGTAGGGACCGAGGGAAGGAAAGAGAAA
AGGGTGAGGAGCGCGAGGGGCGAAAGGAAGGAAGAAGAACATGGGCAGGA
A
back to top

Coding sequence (CDS) from alignment at scaffold_33:98806..99706+

>mRNA_9248 ID=mRNA_9248|Name=jgi.p|Nanoce1779_2|605857|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_33:98806..99706+ (Nannochloropsis oceanica)
ATGGCAGCCCCGGCGCGCCACGAAGAGGAAGACTTGGATTTTGACGAGGA
AAATGAAGCTGCGCCTGCAACAGCTCCTGCCCCTCCCTCTTCCCCTCCCT
CCGCTGCCCCTTCTTCCCCACCAAACAAAAAGACAAGGACAAGCAAGGAA
CAGTCGGATGAGAACAGGAACAGCAGTGGAATGCCTAAAGTCAAAGGACG
TGGCCACCAGAGCGGCGAAGATAAAAGAGGGGGAGGGGGAGGGCACTACG
AGAGCAGAGAAGACGAGGAAGGAGAAGGGGAGATAGGCGACCCTGCGCGT
TCTGTGGAAGGGTGGGTGTTGATCGTCACGGGCTTGCACGAAGAGGCACA
AGAGGATGAGGTTGTGGATCGGTTTGGGGAGTTTGGTGAGGTGAGGAATG
TGCAGATGAACCTTGATCGACGCACGGGCTTTGTGAAGGGTTATGCGCTA
GTGGAGTTTTTGAAGAAAAATGAAGCGGAAAAGGCAAAGGAGGGAATGGA
TAAGGAAGAGATGTATGGGAAGGAGGTGAGAGTGGATTGGGCGTTTGTCC
ATGGAGGGAGAGGAGGTGGAAGGAGGGGGGGAGGACGACGTTAA
back to top
Synonyms
Publications