jgi.p|Nanoce1779_2|605849, mRNA_9246 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605849
Unique NamemRNA_9246
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1847
Alignment locationscaffold_33:91611..93613 -

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Properties
Property NameValue
TranscriptId605935
TrackFilteredModels2
ProteinId605849
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:91611..93613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605849gene_9246Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605849mRNA_9246-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9246CDS_9246Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9246 ID=mRNA_9246|Name=jgi.p|Nanoce1779_2|605849|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp
GGAGGGAGGGCGGGCGTGGTAGAGAGACTGGCATTGGTTCACGAGGATGA
CTTGGGAGCTGTCTTTCTAGCCCGGTATCCCACTGCTGCGGCTGCTACTG
CTGCTGCCGCTACAGCACCGCCGGCTTCTTCCTCCAAGCCAGCCTTCACA
AGGAGCAACAGCAGCGGGAGCAAGGGCCCGTCTTCCTTCTTCCTCAAGAC
CTCTCTTACGCCCGCCGTCAAGAAAGATGAGGTGAACCCGAGCCCTTCCT
CCGTCCCTTCCTACACCTACTGCCTCCTCCGCGCCAGCAACAAGGCGTCT
CTCGTCGCCTCCCACGCGGAAGCAGCTGCTCTTAAGCGTGCGGCCCTGAG
CAGCCTCTTGTCCTCCCGCCTCGCGCCTCGAGGAGGGGCCTCCCCCTTCC
TCCCTCCCCTTATCGCCTCCTTCTCCAGCAGCAACACGCACCCCCACACC
TTCCTGCAGCTCCTCGCAGGCCAGCCGGTTGCCTCCTTCCGGCGTCTCTT
GCAGGAGGGATGGGGGGAGGGAGGGGTCGAAGGAGGGAGGGAGGGACGTT
TTCTCCATTCTTCTTCTCCTTCATTCTTCTCGTGGGGAGGGGGCGGTAAC
CCCTCGTCGTCGGCTACCCCCTCGCCCTCTTCCTCTCCTGCCAAGCCGAA
TCAGCCACATCAGCTGCCTCAGGATCACGCGACCGGCGTGCTCCCTCCTT
CCTTCCCTTCCTCCCTCCAGGCCTCGACCTTGCCCACACGGGAAAGGGTC
TTTGACGAGAGAAGTGTGAAGTATGTGGCCGCCGCCCTCCTCTCCCTCCT
CGGAGACCTGCACGAGAGCCAGCTTCTCTTCCGGGGCCTGCAGCCGGAGT
TGCTGTACGTGGATGCACTGGGGAGGCTGCTGGCGACCGATTTCAGACAC
GCCAAAGTCGGATTGGAGAAGGTCCGTCGCTTTCTCCATGGGAGTCAGGC
TCTTCCTGTTCTTCTTTTTTCTTCCATTTTCTTCCCTCTTCTTCTTTTTT
TCCCTTTGTCTTCTATTGTCAAATCTGATTCTCGCTCCTTCCATTCGCCC
ACCCCTCCCTCTCTTCCTCCCCTCCTCTTTCCCTCCAGACCTACACCCTG
TGTGGCCACGCCGCCTACGCAGCCCCCGAGATGGTTTCCCGCCGAGGCCA
CCAGCACGCTGTCGACTACTGGCAGCTCGGCATCTTGCTCTTCGAGCTCC
TCACCGGCGGCGACACCCCCTTTGCCCTGGCTGCTGCTGCCACTCATGCC
GCCCAAAATGAAAAAGGAGCAACGGCAGGAGGAGGAGGAGGCGGGGTCGA
GGCGAGGGGGGAGGACGAAAAGGCACCACTGCCAACTGAAGATGAGATTT
ACCGCTCCATCTCCTCCTACACCTCTTCCTCCTTCTTGCCCTGGCCCTCC
ACCCTCCCTCTCTCTCCCGACTGCAAGTCCTTTATTTCCTCCCTCCTGGC
TCCCAACCCCTCCTCGCGCCTGGGGTCCCGCCAAGGGACTGTAGAAGGAA
AGACCCACAGGTGGCTCAAGGGAATGAAGTTCGATGAACTCTTCTGTGCT
TCCTTTGGCGGAGGAGGGGGAGGTAGGGAGGGAAGGAGAGAGATGTTATC
TCCGCTGTACCCAGTGACGCAAGCATGGTTGAGGAAGAAGCTGGTAGGGG
TGGATGGGGAGGGAGGATGGGAGGAGGTGGCGGAGGCTTGGAGGAGGGTG
AATGAGGGCAGGTATGAAGGGAAGCAGGAGTTGTATGAATTTGGGTTTTA
AGAACGGAAAAATGGAAAGGGGGAAGGGGGAAGGGGGTGTGCAGGGTGCG
CTTGGCGGCGTGTGCGGAAAGATTGAATGGGGCCGAGAGAAATAGGA
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protein sequence of jgi.p|Nanoce1779_2|605849

>mRNA_9246-protein ID=mRNA_9246-protein|Name=jgi.p|Nanoce1779_2|605849|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MVSRRGHQHAVDYWQLGILLFELLTGGDTPFALAAAATHAAQNEKGATAG
GGGGGVEARGEDEKAPLPTEDEIYRSISSYTSSSFLPWPSTLPLSPDCKS
FISSLLAPNPSSRLGSRQGTVEGKTHRWLKGMKFDELFCASFGGGGGGRE
GRREMLSPLYPVTQAWLRKKLVGVDGEGGWEEVAEAWRRVNEGRYEGKQE
LYEFGF*
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mRNA from alignment at scaffold_33:91611..93613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9246 ID=mRNA_9246|Name=jgi.p|Nanoce1779_2|605849|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp|location=Sequence derived from alignment at scaffold_33:91611..93613- (Nannochloropsis oceanica)
GGAGGGAGGGCGGGCGTGGTAGAGAGACTGGCATTGGTTCACGAGGATGA
CTTGGGAGCTGTCTTTCTAGCCCGGTATCCCACTGCTGCGGCTGCTACTG
CTGCTGCCGCTACAGCACCGCCGGCTTCTTCCTCCAAGCCAGCCTTCACA
AGGAGCAACAGCAGCGGGAGCAAGGGCCCGTCTTCCTTCTTCCTCAAGAC
CTCTCTTACGCCCGCCGTCAAGAAAGATGAGGTGAACCCGAGCCCTTCCT
CCGTCCCTTCCTACACCTACTGCCTCCTCCGCGCCAGCAACAAGGCGTCT
CTCGTCGCCTCCCACGCGGAAGCAGCTGCTCTTAAGGTACGTCATATTCC
TTGCTTCCCTCCCTTCCCTCCTCCCTCCCTCCTTGAGACCACCATCTGAG
CCCTTCCACTCCTGTACTCCACACCCTTTCCCTCCCGCCCCTCCTCCATC
TCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCTCATCACAGCGTGCGGC
CCTGAGCAGCCTCTTGTCCTCCCGCCTCGCGCCTCGAGGAGGGGCCTCCC
CCTTCCTCCCTCCCCTTATCGCCTCCTTCTCCAGCAGCAACACGCACCCC
CACACCTTCCTGCAGCTCCTCGCAGGCCAGCCGGTTGCCTCCTTCCGGCG
TCTCTTGCAGGAGGGATGGGGGGAGGGAGGGGTCGAAGGAGGGAGGGAGG
GACGTTTTCTCCATTCTTCTTCTCCTTCATTCTTCTCGTGGGGAGGGGGC
GGTAACCCCTCGTCGTCGGCTACCCCCTCGCCCTCTTCCTCTCCTGCCAA
GCCGAATCAGCCACATCAGCTGCCTCAGGATCACGCGACCGGCGTGCTCC
CTCCTTCCTTCCCTTCCTCCCTCCAGGCCTCGACCTTGCCCACACGGGAA
AGGGTCTTTGACGAGAGAAGTGTGAAGTATGTGGCCGCCGCCCTCCTCTC
CCTCCTCGGAGACCTGCACGAGAGCCAGCTTCTCTTCCGGGGCCTGCAGC
CGGAGTTGCTGTACGTGGATGCACTGGGGAGGCTGCTGGCGACCGATTTC
AGACACGCCAAAGTCGGATTGGAGAAGGTCCGTCGCTTTCTCCATGGGAG
TCAGGCTCTTCCTGTTCTTCTTTTTTCTTCCATTTTCTTCCCTCTTCTTC
TTTTTTTCCCTTTGTCTTCTATTGTCAAATCTGATTCTCGCTCCTTCCAT
TCGCCCACCCCTCCCTCTCTTCCTCCCCTCCTCTTTCCCTCCAGACCTAC
ACCCTGTGTGGCCACGCCGCCTACGCAGCCCCCGAGATGGTTTCCCGCCG
AGGCCACCAGCACGCTGTCGACTACTGGCAGCTCGGCATCTTGCTCTTCG
AGCTCCTCACCGGCGGCGACACCCCCTTTGCCCTGGCTGCTGCTGCCACT
CATGCCGCCCAAAATGAAAAAGGAGCAACGGCAGGAGGAGGAGGAGGCGG
GGTCGAGGCGAGGGGGGAGGACGAAAAGGCACCACTGCCAACTGAAGATG
AGATTTACCGCTCCATCTCCTCCTACACCTCTTCCTCCTTCTTGCCCTGG
CCCTCCACCCTCCCTCTCTCTCCCGACTGCAAGTCCTTTATTTCCTCCCT
CCTGGCTCCCAACCCCTCCTCGCGCCTGGGGTCCCGCCAAGGGACTGTAG
AAGGAAAGACCCACAGGTGGCTCAAGGGAATGAAGTTCGATGAACTCTTC
TGTGCTTCCTTTGGCGGAGGAGGGGGAGGTAGGGAGGGAAGGAGAGAGAT
GTTATCTCCGCTGTACCCAGTGACGCAAGCATGGTTGAGGAAGAAGCTGG
TAGGGGTGGATGGGGAGGGAGGATGGGAGGAGGTGGCGGAGGCTTGGAGG
AGGGTGAATGAGGGCAGGTATGAAGGGAAGCAGGAGTTGTATGAATTTGG
GTTTTAAGAACGGAAAAATGGAAAGGGGGAAGGGGGAAGGGGGTGTGCAG
GGTGCGCTTGGCGGCGTGTGCGGAAAGATTGAATGGGGCCGAGAGAAATA
GGA
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Coding sequence (CDS) from alignment at scaffold_33:91611..93613-

>mRNA_9246 ID=mRNA_9246|Name=jgi.p|Nanoce1779_2|605849|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_33:91611..93613- (Nannochloropsis oceanica)
ATGGTTTCCCGCCGAGGCCACCAGCACGCTGTCGACTACTGGCAGCTCGG
CATCTTGCTCTTCGAGCTCCTCACCGGCGGCGACACCCCCTTTGCCCTGG
CTGCTGCTGCCACTCATGCCGCCCAAAATGAAAAAGGAGCAACGGCAGGA
GGAGGAGGAGGCGGGGTCGAGGCGAGGGGGGAGGACGAAAAGGCACCACT
GCCAACTGAAGATGAGATTTACCGCTCCATCTCCTCCTACACCTCTTCCT
CCTTCTTGCCCTGGCCCTCCACCCTCCCTCTCTCTCCCGACTGCAAGTCC
TTTATTTCCTCCCTCCTGGCTCCCAACCCCTCCTCGCGCCTGGGGTCCCG
CCAAGGGACTGTAGAAGGAAAGACCCACAGGTGGCTCAAGGGAATGAAGT
TCGATGAACTCTTCTGTGCTTCCTTTGGCGGAGGAGGGGGAGGTAGGGAG
GGAAGGAGAGAGATGTTATCTCCGCTGTACCCAGTGACGCAAGCATGGTT
GAGGAAGAAGCTGGTAGGGGTGGATGGGGAGGGAGGATGGGAGGAGGTGG
CGGAGGCTTGGAGGAGGGTGAATGAGGGCAGGTATGAAGGGAAGCAGGAG
TTGTATGAATTTGGGTTTTAA
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Synonyms
Publications