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Properties
| Property Name | Value |
|---|
| TranscriptId | 633453 |
| Track | FilteredModels2 |
| ProteinId | 633367 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_33 | supercontig | scaffold_33:88643..90370 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9245 ID=mRNA_9245|Name=jgi.p|Nanoce1779_2|633367|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp
AGTATTCGAAATGCCTACGGATGTCCTTCATGAGCCCATGGGGTCTCATC
AAATGAGAAACTTGACTTCATGCTGCATTGCGTGACCCCCCCAACCCCCA
ACCACCAGCGAGGAAAAAGGACCAAATGGCGCTGATATGGGCTACAGCTA
CGCGCATTATGAATTCACAGTGGACAAGTGACCTCATCTGCAAGACATGC
AAACCTGAATCTCGTGTGTTGTGGCAGCAGATATAGATCCATCGCCGGAG
ATGCAGCAGCAATTGGACAAGGGCAACCTCGGAGCACGCATCAATGACAA
CTACATTCATGGACTCTTTGTAAGGGCTGCCCAAATTAGGAGAAAAGGGG
GCTTACATCATTACCTGAAGCCGGTGAAAAAGTCAGACCACCACCGACAG
CAGCAGCAGCTGCTGCAACAGCAGCGTGGCGGTGGAGGGGGCGATGATGG
TGAGAGGGAGGAGGAGGAGAAGGAAGAGGAGCAACAACAACAGCAGCAGC
AGCCATCACCTGCAGCAACTATGCAGAGGCATTTGGCGAAGCTACCCCTT
GCATAGGGTATAGACCCCGACAGCTTGGGGGCTCCAAAACCTATCTCCTA
GACGTTCCACTCTCTTATTTCTACCCCAAAACCTCCAAAATTGTTCAAAA
TGGAGGTATTAGGATATAAATAACTGAGAGGAAAGTCTAGAAAAAAGGTT
TGAGATCTCCGCGCACGGAGTTTCCGCCCAAAAAGGCATGGATCTTCGAA
AGGTTGACATGCGGTAGTGGGCAGAAAGGAGAAGACCAGCGAGGTTTCCT
TGGCTTAGAAGGATGATCAGCAATTTGGATTGCTGACCCGAATGGCAGCA
ATTCCAACAAAGGCGACGACCGAGATCTTCCTTTCACCCATCTCAAGGCG
AAGAAGGCCATCAGAAGAAGCATGCCGGTCTTGCCAACCTGGTGGTCCTC
AATGCTGAGAGGAAGGTCGGTTCCTTGGTGCGGACAGTGGGGTTGCATGA
GCGTTTGCGGGTGTAGCTGACGCAGCAGAGTTGGCCGGGGATGCAGGCTG
CTTTTGTGCGGGCAAGCAAGCGAAATGTTGGTGCTGAGTAGATGTTGCGG
ATGATTGCGGGCTGCGTTAATCGCACCTACAAGCCTAAGGAGCAGAGAGG
AAATGGATATGGCCACTCTGCTCTTTCGCATTACGGGACCCAATGGGCTT
TATGCTCTCATGCAAATGCTTTATTTACCCCGCGAAAGCTACCTTTACGA
GCGGTCAGTCATTGCCGCCTTCGACCCCGTGATTCTCAAGCCTTTGTGGA
GCTACGTGCAAGGTTTGGTTAATGCTTCCATAGTCAACTTCCTTGCTTTT
TTTTTTGAGCCTGTCTTGAGGGGGGAGATGACGTAGGTGGAGGCCTACGA
GAGGGGTTAGATGCTGATGATGGATGAGGTGGCTGATATTTATATATTGT
GAGAGGTTGCGCTACTTTCCCAATGCAGACTGTATTTTAAGTACCTTCGC
TTTTCATCGTCCGCTGCCTCTTGGCAGTCCTCAGCAGCATGACGAAGACA
GGGC back to topprotein sequence of jgi.p|Nanoce1779_2|633367 >mRNA_9245-protein ID=mRNA_9245-protein|Name=jgi.p|Nanoce1779_2|633367|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MQQQLDKGNLGARINDNYIHGLFVRAAQIRRKGGLHHYLKPVKKSDHHRQ
QQQLLQQQRGGGGGDDGEREEEEKEEEQQQQQQQPSPAATMQRHLAKLPL
A* back to topmRNA from alignment at scaffold_33:88643..90370- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9245 ID=mRNA_9245|Name=jgi.p|Nanoce1779_2|633367|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp|location=Sequence derived from alignment at scaffold_33:88643..90370- (Nannochloropsis oceanica)
AGTATTCGAAATGCCTACGGATGTCCTTCATGAGCCCATGGGGTCTCATC
AAATGAGAAACTTGACTTCATGCTGCATTGCGTGGTAAGGCCTTTAGGGG
GTTAGGTGTCAGCTCTTTTGTTCAAATATCTCGATGCCAACCAAAAATTG
CCACTGATACTCGTGTCACCATCTATTTATACATAGTGGATCTTAATTGT
GCCCTGGCACCATCCCACCATGGCGTCTTCATGGTCAAAATCACCACCCC
TCCAACAGACCCCCCCAACCCCCAACCACCAGCGAGGAAAAAGGACCAAA
TGGCGCTGATATGGGCTACAGCTACGCGCATTATGAATTCACAGTGGACA
AGTGACCTCATCTGCAAGACATGCAAACCTGAATCTCGTGTGTTGTGGCA
GCAGATATAGATCCATCGCCGGAGATGCAGCAGCAATTGGACAAGGGCAA
CCTCGGAGCACGCATCAATGACAACTACATTCATGGACTCTTTGTAAGGG
CTGCCCAAATTAGGAGAAAAGGGGGCTTACATCATTACCTGAAGCCGGTG
AAAAAGTCAGACCACCACCGACAGCAGCAGCAGCTGCTGCAACAGCAGCG
TGGCGGTGGAGGGGGCGATGATGGTGAGAGGGAGGAGGAGGAGAAGGAAG
AGGAGCAACAACAACAGCAGCAGCAGCCATCACCTGCAGCAACTATGCAG
AGGCATTTGGCGAAGCTACCCCTTGCATAGGGTATAGACCCCGACAGCTT
GGGGGCTCCAAAACCTATCTCCTAGACGTTCCACTCTCTTATTTCTACCC
CAAAACCTCCAAAATTGTTCAAAATGGAGGTATTAGGATATAAATAACTG
AGAGGAAAGTCTAGAAAAAAGGTTTGAGATCTCCGCGCACGGAGTTTCCG
CCCAAAAAGGCATGGATCTTCGAAAGGTTGACATGCGGTAGTGGGCAGAA
AGGAGAAGACCAGCGAGGTTTCCTTGGCTTAGAAGGATGATCAGCAATTT
GGATTGCTGACCCGAATGGCAGCAATTCCAACAAAGGCGACGACCGAGAT
CTTCCTTTCACCCATCTCAAGGCGAAGAAGGCCATCAGAAGAAGCATGCC
GGTCTTGCCAACCTGGTGGTCCTCAATGCTGAGAGGAAGGTCGGTTCCTT
GGTGCGGACAGTGGGGTTGCATGAGCGTTTGCGGGTGTAGCTGACGCAGC
AGAGTTGGCCGGGGATGCAGGCTGCTTTTGTGCGGGCAAGCAAGCGAAAT
GTTGGTGCTGAGTAGATGTTGCGGATGATTGCGGGCTGCGTTAATCGCAC
CTACAAGCCTAAGGAGCAGAGAGGAAATGGATATGGCCACTCTGCTCTTT
CGCATTACGGGACCCAATGGGCTTTATGCTCTCATGCAAATGCTTTATTT
ACCCCGCGAAAGCTACCTTTACGAGCGGTCAGTCATTGCCGCCTTCGACC
CCGTGATTCTCAAGCCTTTGTGGAGCTACGTGCAAGGTTTGGTTAATGCT
TCCATAGTCAACTTCCTTGCTTTTTTTTTTGAGCCTGTCTTGAGGGGGGA
GATGACGTAGGTGGAGGCCTACGAGAGGGGTTAGATGCTGATGATGGATG
AGGTGGCTGATATTTATATATTGTGAGAGGTTGCGCTACTTTCCCAATGC
AGACTGTATTTTAAGTACCTTCGCTTTTCATCGTCCGCTGCCTCTTGGCA
GTCCTCAGCAGCATGACGAAGACAGGGC back to topCoding sequence (CDS) from alignment at scaffold_33:88643..90370- >mRNA_9245 ID=mRNA_9245|Name=jgi.p|Nanoce1779_2|633367|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_33:88643..90370- (Nannochloropsis oceanica)
ATGCAGCAGCAATTGGACAAGGGCAACCTCGGAGCACGCATCAATGACAA
CTACATTCATGGACTCTTTGTAAGGGCTGCCCAAATTAGGAGAAAAGGGG
GCTTACATCATTACCTGAAGCCGGTGAAAAAGTCAGACCACCACCGACAG
CAGCAGCAGCTGCTGCAACAGCAGCGTGGCGGTGGAGGGGGCGATGATGG
TGAGAGGGAGGAGGAGGAGAAGGAAGAGGAGCAACAACAACAGCAGCAGC
AGCCATCACCTGCAGCAACTATGCAGAGGCATTTGGCGAAGCTACCCCTT
GCATAG back to top
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