jgi.p|Nanoce1779_2|605844, mRNA_9244 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605844
Unique Name	mRNA_9244
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1544
Alignment location	scaffold_33:88643..90186 +

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Properties


Property Name	Value
TranscriptId	605930
Track	FilteredModels2
ProteinId	605844

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:88643..90186 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605844	gene_9244	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605844	mRNA_9244-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9244	CDS_9244	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:88643..90186+
coding sequence from alignment at scaffold_33:88643..90186+

mRNA sequence

>mRNA_9244 ID=mRNA_9244|Name=jgi.p|Nanoce1779_2|605844|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp
GCCCTGTCTTCGTCATGCTGCTGAGGACTGCCAAGAGGCAGCGGACGATG
AAAAGCGAAGGTACTTAAAATACAGTCTGCATTGGGAAAGTAGCGCAACC
TCTCACAATATATAAATATCAGCCACCTCATCCATCATCAGCATCTAACC
CCTCTCGTAGGCCTCCACCTACGTCATCTCCCCCCTCAAGACAGGCTCAA
AAAAAAAAGCAAGGAAGTTGACTATGGAAGCATTAACCAAACCTTGCACG
TAGCTCCACAAAGGCTTGAGAATCACGGGGTCGAAGGCGGCAATGACTGA
CCGCTCGTAAAGGTAGCTTTCGCGGGGTAAATAAAGCATTTGCATGAGAG
CATAAAGCCCATTGGGTCCCGTAATGCGAAAGAGCAGAGTGGCCATATCC
ATTTCCTCTCTGCTCCTTAGGCTTGTAGGTGCGATTAACGCAGCCCGCAA
TCATCCGCAACATCTACTCAGCACCAACATTTCGCTTGCTTGCCCGCACA
AAAGCAGCCTGCATCCCCGGCCAACTCTGCTGCGTCAGCTACACCCGCAA
ACGCTCATGCAACCCCACTGTCCGCACCAAGGAACCGACCTTCCTCTCAG
CATTGAGGACCACCAGGTTGGCAAGACCGGCATGCTTCTTCTGATGGCCT
TCTTCGCCTTGAGATGGGTGAAAGGAAGATCTCGGTCGTCGCCTTTGTTG
GAATTGCTGCCATTCGGGTCAGCAATCCAAATTGCTGATCATCCTTCTAA
GCCAAGGAAACCTCGCTGGTCTTCTCCTTTCTGCCCACTACCGCATGTCA
ACCTTTCGAAGATCCATGCCTTTTTGGGCGGAAACTCCGTGCGCGGAGAT
CTCAAACCTTTTTTCTAGACTTTCCTCTCAGTTATTTATATCCTAATACC
TCCATTTTGAACAATTTTGGAGGTTTTGGGGTAGAAATAAGAGAGTGGAA
CGTCTAGGAGATAGGTTTTGGAGCCCCCAAGCTGTCGGGGTCTATACCCT
ATGCAAGGGGTAGCTTCGCCAAATGCCTCTGCATAGTTGCTGCAGGTGAT
GGCTGCTGCTGCTGTTGTTGTTGCTCCTCTTCCTTCTCCTCCTCCTCCCT
CTCACCATCATCGCCCCCTCCACCGCCACGCTGCTGTTGCAGCAGCTGCT
GCTGCTGTCGGTGGTGGTCTGACTTTTTCACCGGCTTCAGGTAATGATGT
AAGCCCCCTTTTCTCCTAATTTGGGCAGCCCTTACAAAGAGTCCATGAAT
GTAGTTGTCATTGATGCGTGCTCCGAGGTTGCCCTTGTCCAATTGCTGCT
GCATCTCCGGCGATGGATCTATATCTGCTGCCACAACACACGAGATTCAG
GTTTGCATGTCTTGCAGATGAGGTCACTTGTCCACTGTGAATTCATAATG
CGCGTAGCTGTAGCCCATATCAGCGCCATTTGGTCCTTTTTCCTCGCTGG
TGGTTGGGGGTTGGGGGGGTCTGTTGGAGGGGTGGTGATTTTGACCATGA
AGACGCCATGGTGGGATGGTGCCAGGGCACAATTAAGATCCACT

protein sequence of jgi.p|Nanoce1779_2|605844

>mRNA_9244-protein ID=mRNA_9244-protein|Name=jgi.p|Nanoce1779_2|605844|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MRKSRVAISISSLLLRLVGAINAARNHPQHLLSTNISLACPHKSSLHPRP
TLLRQLHPQTLMQPHCPHQGTDLPLSIEDHQVGKTGMLLLMAFFALRWVK
GRSRSSPLLELLPFGSAIQIADHPSKPRKPRWSSPFCPLPHVNLSKIHAF
LGGNSVRGDLKPFF*

mRNA from alignment at scaffold_33:88643..90186+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9244 ID=mRNA_9244|Name=jgi.p|Nanoce1779_2|605844|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp|location=Sequence derived from alignment at scaffold_33:88643..90186+ (Nannochloropsis oceanica)
GCCCTGTCTTCGTCATGCTGCTGAGGACTGCCAAGAGGCAGCGGACGATG
AAAAGCGAAGGTACTTAAAATACAGTCTGCATTGGGAAAGTAGCGCAACC
TCTCACAATATATAAATATCAGCCACCTCATCCATCATCAGCATCTAACC
CCTCTCGTAGGCCTCCACCTACGTCATCTCCCCCCTCAAGACAGGCTCAA
AAAAAAAAGCAAGGAAGTTGACTATGGAAGCATTAACCAAACCTTGCACG
TAGCTCCACAAAGGCTTGAGAATCACGGGGTCGAAGGCGGCAATGACTGA
CCGCTCGTAAAGGTAGCTTTCGCGGGGTAAATAAAGCATTTGCATGAGAG
CATAAAGCCCATTGGGTCCCGTAATGCGAAAGAGCAGAGTGGCCATATCC
ATTTCCTCTCTGCTCCTTAGGCTTGTAGGTGCGATTAACGCAGCCCGCAA
TCATCCGCAACATCTACTCAGCACCAACATTTCGCTTGCTTGCCCGCACA
AAAGCAGCCTGCATCCCCGGCCAACTCTGCTGCGTCAGCTACACCCGCAA
ACGCTCATGCAACCCCACTGTCCGCACCAAGGAACCGACCTTCCTCTCAG
CATTGAGGACCACCAGGTTGGCAAGACCGGCATGCTTCTTCTGATGGCCT
TCTTCGCCTTGAGATGGGTGAAAGGAAGATCTCGGTCGTCGCCTTTGTTG
GAATTGCTGCCATTCGGGTCAGCAATCCAAATTGCTGATCATCCTTCTAA
GCCAAGGAAACCTCGCTGGTCTTCTCCTTTCTGCCCACTACCGCATGTCA
ACCTTTCGAAGATCCATGCCTTTTTGGGCGGAAACTCCGTGCGCGGAGAT
CTCAAACCTTTTTTCTAGACTTTCCTCTCAGTTATTTATATCCTAATACC
TCCATTTTGAACAATTTTGGAGGTTTTGGGGTAGAAATAAGAGAGTGGAA
CGTCTAGGAGATAGGTTTTGGAGCCCCCAAGCTGTCGGGGTCTATACCCT
ATGCAAGGGGTAGCTTCGCCAAATGCCTCTGCATAGTTGCTGCAGGTGAT
GGCTGCTGCTGCTGTTGTTGTTGCTCCTCTTCCTTCTCCTCCTCCTCCCT
CTCACCATCATCGCCCCCTCCACCGCCACGCTGCTGTTGCAGCAGCTGCT
GCTGCTGTCGGTGGTGGTCTGACTTTTTCACCGGCTTCAGGTAATGATGT
AAGCCCCCTTTTCTCCTAATTTGGGCAGCCCTTACAAAGAGTCCATGAAT
GTAGTTGTCATTGATGCGTGCTCCGAGGTTGCCCTTGTCCAATTGCTGCT
GCATCTCCGGCGATGGATCTATATCTGCTGCCACAACACACGAGATTCAG
GTTTGCATGTCTTGCAGATGAGGTCACTTGTCCACTGTGAATTCATAATG
CGCGTAGCTGTAGCCCATATCAGCGCCATTTGGTCCTTTTTCCTCGCTGG
TGGTTGGGGGTTGGGGGGGTCTGTTGGAGGGGTGGTGATTTTGACCATGA
AGACGCCATGGTGGGATGGTGCCAGGGCACAATTAAGATCCACT

Coding sequence (CDS) from alignment at scaffold_33:88643..90186+

>mRNA_9244 ID=mRNA_9244|Name=jgi.p|Nanoce1779_2|605844|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_33:88643..90186+ (Nannochloropsis oceanica)
ATGCGAAAGAGCAGAGTGGCCATATCCATTTCCTCTCTGCTCCTTAGGCT
TGTAGGTGCGATTAACGCAGCCCGCAATCATCCGCAACATCTACTCAGCA
CCAACATTTCGCTTGCTTGCCCGCACAAAAGCAGCCTGCATCCCCGGCCA
ACTCTGCTGCGTCAGCTACACCCGCAAACGCTCATGCAACCCCACTGTCC
GCACCAAGGAACCGACCTTCCTCTCAGCATTGAGGACCACCAGGTTGGCA
AGACCGGCATGCTTCTTCTGATGGCCTTCTTCGCCTTGAGATGGGTGAAA
GGAAGATCTCGGTCGTCGCCTTTGTTGGAATTGCTGCCATTCGGGTCAGC
AATCCAAATTGCTGATCATCCTTCTAAGCCAAGGAAACCTCGCTGGTCTT
CTCCTTTCTGCCCACTACCGCATGTCAACCTTTCGAAGATCCATGCCTTT
TTGGGCGGAAACTCCGTGCGCGGAGATCTCAAACCTTTTTTCTAG

Synonyms

Publications