jgi.p|Nanoce1779_2|605843, mRNA_9243 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605843
Unique NamemRNA_9243
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1235
Alignment locationscaffold_33:87433..88667 +

Link to JBrowse

Properties
Property NameValue
TranscriptId605929
TrackFilteredModels2
ProteinId605843
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:87433..88667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605843gene_9243Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605843mRNA_9243-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9243CDS_9243Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9243 ID=mRNA_9243|Name=jgi.p|Nanoce1779_2|605843|organism=Nannochloropsis oceanica|type=mRNA|length=1235bp
GTTCTCCGTCGAAAATGAGGAACGCAAAACCCAGGATTTTACATTTTTTG
TGTTTTTGTAAGAAGTGAGAGGATGTGAGACATGTGCCTGAAATGGTTGC
AATCAGAATAGTGAGAGGAAGCCAAAAAGCCCTTTTTGGCAAAAAAGGAG
ACACCAAAAAGCAGCCCTAGGAGGGTGAGTTGGTGTGGGTTGTGGGTGGG
CCATATCAAAATAGGGACCATTACCATCAACACTCACATACTACTTCTTT
ATGAGCGATATAGAAGAAATATATGTCTACACATAAACAATATTTTCTGA
TTTTCTGCCTTTCTCTCTTTTTTCTACCCCATCTGTCACCTTCGCCTTTT
CTTTCTTCCTCACTTCCTTCGACGTGCATCGTCCCCACTGTCGTTGGAAT
CACTGCTGCTGCTGCTATAACCTGTTTCCTTCCCCCCGCCCCCCCTTGTC
CCTTGAAATTTCCCTCTTCATCACTGCTGTCACTGTCACAAATATCCATC
CTTTTATCATCACCTTTCCTTTGGTCTTGTCCCCTTTGCAACTCTCCCCC
TCATCATCCTCATCAACATCCTCTGGTTCTTTCCCCTCTCCTTCTTCCTC
CTCCACTCCATTCGCCCTTCCTTCCACCGTCCGCTTCTACTTCTCCTTTG
TATTTTCTCCCTTTCGAAGGGCCAAGAGCGGTCTTATACTTTTTAAGGAC
ACTGCTACTCTCTCTCGCTATTTCTTCCAGGGATAATGAAAAGGTCATGC
CCAGCTATCCTGGCACCAGCTGCTGCATCTCCCCAAAGAGAATGGTGTTA
TTTCTGACGCGAAGGAGATGAGACAGATAAGACGAAATCAGAGCAGAAGC
CCGCGTGAGAGACGGAACAGAGCTGAACGGATCTGATCCTGTCTCTCTCT
CACGCTGGCTTTAGTCTGCTTTCATCGTGTACTCTGTCTCGTCCTTCCTC
CCAGAAATATGATCAGAAACCTTCACCACCAATGCAACCCACGCCGACGC
CACTGTTGATTCCTTCGCCCATCAACAGAGATGTGGTAAGATGTGAGGCA
CCACTTCGTCTCTCTACACCACGTTCGAGCGGCCGTCCATCGGGCACACC
ACAGGGATATTTGCTACAGGGAAGCCGATAGCTTGATCTCGACAGGCTTG
TCGCCTTTAACTGCAATTATCCTGCTCCCCACCTCTTCATTCCGTGTATA
TTGAACGACTGCCCTGTCTTCGTCATGCTGCTGAG
back to top

protein sequence of jgi.p|Nanoce1779_2|605843

>mRNA_9243-protein ID=mRNA_9243-protein|Name=jgi.p|Nanoce1779_2|605843|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MSTHKQYFLIFCLSLFFLPHLSPSPFLSSSLPSTCIVPTVVGITAAAAIT
CFLPPAPPCPLKFPSSSLLSLSQISILLSSPFLWSCPLCNSPPHHPHQHP
LVLSPLLLPPPLHSPFLPPSASTSPLYFLPFEGPRAVLYFLRTLLLSLAI
SSRDNEKVMPSYPGTSCCISPKRMVLFLTRRR*
back to top

mRNA from alignment at scaffold_33:87433..88667+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9243 ID=mRNA_9243|Name=jgi.p|Nanoce1779_2|605843|organism=Nannochloropsis oceanica|type=mRNA|length=1235bp|location=Sequence derived from alignment at scaffold_33:87433..88667+ (Nannochloropsis oceanica)
GTTCTCCGTCGAAAATGAGGAACGCAAAACCCAGGATTTTACATTTTTTG
TGTTTTTGTAAGAAGTGAGAGGATGTGAGACATGTGCCTGAAATGGTTGC
AATCAGAATAGTGAGAGGAAGCCAAAAAGCCCTTTTTGGCAAAAAAGGAG
ACACCAAAAAGCAGCCCTAGGAGGGTGAGTTGGTGTGGGTTGTGGGTGGG
CCATATCAAAATAGGGACCATTACCATCAACACTCACATACTACTTCTTT
ATGAGCGATATAGAAGAAATATATGTCTACACATAAACAATATTTTCTGA
TTTTCTGCCTTTCTCTCTTTTTTCTACCCCATCTGTCACCTTCGCCTTTT
CTTTCTTCCTCACTTCCTTCGACGTGCATCGTCCCCACTGTCGTTGGAAT
CACTGCTGCTGCTGCTATAACCTGTTTCCTTCCCCCCGCCCCCCCTTGTC
CCTTGAAATTTCCCTCTTCATCACTGCTGTCACTGTCACAAATATCCATC
CTTTTATCATCACCTTTCCTTTGGTCTTGTCCCCTTTGCAACTCTCCCCC
TCATCATCCTCATCAACATCCTCTGGTTCTTTCCCCTCTCCTTCTTCCTC
CTCCACTCCATTCGCCCTTCCTTCCACCGTCCGCTTCTACTTCTCCTTTG
TATTTTCTCCCTTTCGAAGGGCCAAGAGCGGTCTTATACTTTTTAAGGAC
ACTGCTACTCTCTCTCGCTATTTCTTCCAGGGATAATGAAAAGGTCATGC
CCAGCTATCCTGGCACCAGCTGCTGCATCTCCCCAAAGAGAATGGTGTTA
TTTCTGACGCGAAGGAGATGAGACAGATAAGACGAAATCAGAGCAGAAGC
CCGCGTGAGAGACGGAACAGAGCTGAACGGATCTGATCCTGTCTCTCTCT
CACGCTGGCTTTAGTCTGCTTTCATCGTGTACTCTGTCTCGTCCTTCCTC
CCAGAAATATGATCAGAAACCTTCACCACCAATGCAACCCACGCCGACGC
CACTGTTGATTCCTTCGCCCATCAACAGAGATGTGGTAAGATGTGAGGCA
CCACTTCGTCTCTCTACACCACGTTCGAGCGGCCGTCCATCGGGCACACC
ACAGGGATATTTGCTACAGGGAAGCCGATAGCTTGATCTCGACAGGCTTG
TCGCCTTTAACTGCAATTATCCTGCTCCCCACCTCTTCATTCCGTGTATA
TTGAACGACTGCCCTGTCTTCGTCATGCTGCTGAG
back to top

Coding sequence (CDS) from alignment at scaffold_33:87433..88667+

>mRNA_9243 ID=mRNA_9243|Name=jgi.p|Nanoce1779_2|605843|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_33:87433..88667+ (Nannochloropsis oceanica)
ATGTCTACACATAAACAATATTTTCTGATTTTCTGCCTTTCTCTCTTTTT
TCTACCCCATCTGTCACCTTCGCCTTTTCTTTCTTCCTCACTTCCTTCGA
CGTGCATCGTCCCCACTGTCGTTGGAATCACTGCTGCTGCTGCTATAACC
TGTTTCCTTCCCCCCGCCCCCCCTTGTCCCTTGAAATTTCCCTCTTCATC
ACTGCTGTCACTGTCACAAATATCCATCCTTTTATCATCACCTTTCCTTT
GGTCTTGTCCCCTTTGCAACTCTCCCCCTCATCATCCTCATCAACATCCT
CTGGTTCTTTCCCCTCTCCTTCTTCCTCCTCCACTCCATTCGCCCTTCCT
TCCACCGTCCGCTTCTACTTCTCCTTTGTATTTTCTCCCTTTCGAAGGGC
CAAGAGCGGTCTTATACTTTTTAAGGACACTGCTACTCTCTCTCGCTATT
TCTTCCAGGGATAATGAAAAGGTCATGCCCAGCTATCCTGGCACCAGCTG
CTGCATCTCCCCAAAGAGAATGGTGTTATTTCTGACGCGAAGGAGATGA
back to top
Synonyms
Publications