jgi.p|Nanoce1779_2|605840, mRNA_9242 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605840
Unique NamemRNA_9242
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length600
Alignment locationscaffold_33:85261..85860 +

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Properties
Property NameValue
TranscriptId605926
TrackFilteredModels2
ProteinId605840
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:85261..85860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605840gene_9242Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605840mRNA_9242-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9242CDS_9242Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9242 ID=mRNA_9242|Name=jgi.p|Nanoce1779_2|605840|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
TCGCTTCTTTCTGTTTAAGCTTTAACCTGTTGACATGTCTGATGTGAATT
CTTCTTCGCCGCATGCCTGGAGGTGCAAAGAGGGGAAGGAAGGAAGGAAG
GGAGGGAGGGAGGGAGGAGAGGGAAGACGAGTAACAATACTTGCACGTAC
GCCCATGTCCCATGGCAATGTACCCTGGCATTGATGTCGTCTCCCATTGT
CCGATCTCCTTCCCTTCTTCTCCTCATGCTCCCTTTCCTGCCTATCTCTT
TTCAATCAGTACCTTTTCTTCTTATGTTAATGGGGCTGCTCTAATTCTTT
CTTTGCTCTTTCCCTCTCCCTCTCTCTCCCCCCTTCTGTCTCTGTCTCTG
TCTGTCTCTGTCTCTCTCTGTGTGTGGATGTCTCCAGTCTCTCTCTCTCC
ATGTCACCACATCTCGTTTTCTCCCTCCCTCCCGGTCTCTCTTTCTCGCT
TTTACTAGTTTTTGGTACATATATAAATATTCTTTCGTCCCCTCCTTTTT
CACCTCTTTTCTCTCTCTAATACCCCAAAAATCTTTTGTATTCTCCCTTC
TTTCCTCTTTCCTCTTTCCTCTCACCCTCCCTCCCTTCCTCCCCTCCTTC
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protein sequence of jgi.p|Nanoce1779_2|605840

>mRNA_9242-protein ID=mRNA_9242-protein|Name=jgi.p|Nanoce1779_2|605840|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MAMYPGIDVVSHCPISFPSSPHAPFPAYLFSISTFSSYVNGAALILSLLF
PSPSLSPLLSLSLSVSVSLCVWMSPVSLSPCHHISFSPSLPVSLSRFY*
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mRNA from alignment at scaffold_33:85261..85860+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9242 ID=mRNA_9242|Name=jgi.p|Nanoce1779_2|605840|organism=Nannochloropsis oceanica|type=mRNA|length=600bp|location=Sequence derived from alignment at scaffold_33:85261..85860+ (Nannochloropsis oceanica)
TCGCTTCTTTCTGTTTAAGCTTTAACCTGTTGACATGTCTGATGTGAATT
CTTCTTCGCCGCATGCCTGGAGGTGCAAAGAGGGGAAGGAAGGAAGGAAG
GGAGGGAGGGAGGGAGGAGAGGGAAGACGAGTAACAATACTTGCACGTAC
GCCCATGTCCCATGGCAATGTACCCTGGCATTGATGTCGTCTCCCATTGT
CCGATCTCCTTCCCTTCTTCTCCTCATGCTCCCTTTCCTGCCTATCTCTT
TTCAATCAGTACCTTTTCTTCTTATGTTAATGGGGCTGCTCTAATTCTTT
CTTTGCTCTTTCCCTCTCCCTCTCTCTCCCCCCTTCTGTCTCTGTCTCTG
TCTGTCTCTGTCTCTCTCTGTGTGTGGATGTCTCCAGTCTCTCTCTCTCC
ATGTCACCACATCTCGTTTTCTCCCTCCCTCCCGGTCTCTCTTTCTCGCT
TTTACTAGTTTTTGGTACATATATAAATATTCTTTCGTCCCCTCCTTTTT
CACCTCTTTTCTCTCTCTAATACCCCAAAAATCTTTTGTATTCTCCCTTC
TTTCCTCTTTCCTCTTTCCTCTCACCCTCCCTCCCTTCCTCCCCTCCTTC
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Coding sequence (CDS) from alignment at scaffold_33:85261..85860+

>mRNA_9242 ID=mRNA_9242|Name=jgi.p|Nanoce1779_2|605840|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_33:85261..85860+ (Nannochloropsis oceanica)
ATGGCAATGTACCCTGGCATTGATGTCGTCTCCCATTGTCCGATCTCCTT
CCCTTCTTCTCCTCATGCTCCCTTTCCTGCCTATCTCTTTTCAATCAGTA
CCTTTTCTTCTTATGTTAATGGGGCTGCTCTAATTCTTTCTTTGCTCTTT
CCCTCTCCCTCTCTCTCCCCCCTTCTGTCTCTGTCTCTGTCTGTCTCTGT
CTCTCTCTGTGTGTGGATGTCTCCAGTCTCTCTCTCTCCATGTCACCACA
TCTCGTTTTCTCCCTCCCTCCCGGTCTCTCTTTCTCGCTTTTACTAG
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Synonyms
Publications