jgi.p|Nanoce1779_2|574680, mRNA_924 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574680
Unique NamemRNA_924
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length482
Alignment locationscaffold_2:765016..766040 +

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Properties
Property NameValue
TranscriptId574766
TrackFilteredModels2
ProteinId574680
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:765016..766040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574680gene_924Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574680mRNA_924-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_924CDS_924Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_924 ID=mRNA_924|Name=jgi.p|Nanoce1779_2|574680|organism=Nannochloropsis oceanica|type=mRNA|length=482bp
ACAGGGATGGTTTCTGGGGGGCACTGTCTGGCGTTTGCCTTGCGTCTTCC
ACACGGTGCCAGCATCTTGGCTCGATCTCAAGGGGTGGTGATGGGGATAG
AACGCCGGTCACCTTTTGGAGGCCGCCGCATGTTGTCTACGGAGGAAAGT
ACTCAAGCAGCCGCTCATGCACCGTCCAAAGGTTCTTCGCTCCTTCAGCG
GTTATCCTCCTTCCTGGCTGGCGTGGGCGTGACGTCCTTGGTGGGCTACT
ATTTTCTCGTCCAGGATGTGAAGCGGTCGACCGAGTCGGTACAAGCGGGC
ATGAGCGACATCACAAAGAGACTGGAGGCGCTGGAGAAGAGCAAATAAGT
CTGATAAGGAAGGGAGTTGTAATGGCAGTTGAGGTGGTGGCACGGACACC
TGCAGCAGCAATTACAGAGGAAATGAGTAGTGGTGGGGAGATTGGAATGC
AAACAAAAGGGAGAAAAGAAAAATAAGCATGC
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protein sequence of jgi.p|Nanoce1779_2|574680

>mRNA_924-protein ID=mRNA_924-protein|Name=jgi.p|Nanoce1779_2|574680|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MVSGGHCLAFALRLPHGASILARSQGVVMGIERRSPFGGRRMLSTEESTQ
AAAHAPSKGSSLLQRLSSFLAGVGVTSLVGYYFLVQDVKRSTESVQAGMS
DITKRLEALEKSK*
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mRNA from alignment at scaffold_2:765016..766040+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_924 ID=mRNA_924|Name=jgi.p|Nanoce1779_2|574680|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp|location=Sequence derived from alignment at scaffold_2:765016..766040+ (Nannochloropsis oceanica)
ACAGGGATGGTTTCTGGGGGGCACTGTCTGGCGTTTGCCTTGCGTCTTCC
ACACGGTGCCAGCATCTTGGCTCGATCTCAAGGGGTGGTGATGGGGATAG
AACGCCGGTCACCTTTTGGAGGCCGCCGCATGTTGTCTACGGAGGAAAGT
ACTCAAGCAGCCGCTCATGCACCGTCCAAAGGTACATGAGAATGATACGA
AGGAAAGGGGAAAGTGGAGGGGGCGGGGGGGAAGAGTGCAGGCTGGCCTT
TGTGCGCGATGAAGAGGAGGGACAGAACGCAGGCCAGGGTCTTGATGTTG
CCAGGCATGGAACCTGACGAATCAAAAAAGTGCCATCTTACCCTGCCCTC
CGAAACATTTGGCATTTCAAACAGGTTCTTCGCTCCTTCAGCGGTTATCC
TCCTTCCTGGCTGGCGTGGGCGTGACGTCCTTGGTGGGCTACTATTTTCT
CGTCCAGGATGTGAAGCGGTACGTGTTGGGAACGGACGAAGCTCAGCTCT
GCTAGTGTCTGGTATTTGATATCATCCGAAAATATTGGTGACACTCGGTT
TACCAACTACATCTCCTTGCTGGTGGCCACCTCATGCCTCGCTCCTACAT
CGGCTGCTCGGAGATGCAAGGGGAAAGAACATCTGGCCGAGAGGGCTCTC
TTTTGGGATCAGGACCTTTTATTTATTATTCAATTTCTGGTTTTCGAACG
GGGTACTTTTTTATGCGCTCCCTTTTGTCGTACCTACTTATCAAATTGAA
ACTGTTCTCCCATTCTGACCTAATCGGCTCCTTTCCATTCTTATCTTCCT
GCACCACGTCAAATACAGGTCGACCGAGTCGGTACAAGCGGGCATGAGCG
ACATCACAAAGAGACTGGAGGCGCTGGAGAAGAGCAAATAAGTCTGATAA
GGAAGGGAGTTGTAATGGCAGTTGAGGTGGTGGCACGGACACCTGCAGCA
GCAATTACAGAGGAAATGAGTAGTGGTGGGGAGATTGGAATGCAAACAAA
AGGGAGAAAAGAAAAATAAGCATGC
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Coding sequence (CDS) from alignment at scaffold_2:765016..766040+

>mRNA_924 ID=mRNA_924|Name=jgi.p|Nanoce1779_2|574680|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_2:765016..766040+ (Nannochloropsis oceanica)
ATGGTTTCTGGGGGGCACTGTCTGGCGTTTGCCTTGCGTCTTCCACACGG
TGCCAGCATCTTGGCTCGATCTCAAGGGGTGGTGATGGGGATAGAACGCC
GGTCACCTTTTGGAGGCCGCCGCATGTTGTCTACGGAGGAAAGTACTCAA
GCAGCCGCTCATGCACCGTCCAAAGGTTCTTCGCTCCTTCAGCGGTTATC
CTCCTTCCTGGCTGGCGTGGGCGTGACGTCCTTGGTGGGCTACTATTTTC
TCGTCCAGGATGTGAAGCGGTCGACCGAGTCGGTACAAGCGGGCATGAGC
GACATCACAAAGAGACTGGAGGCGCTGGAGAAGAGCAAATAAATGGTTTC
TGGGGGGCACTGTCTGGCGTTTGCCTTGCGTCTTCCACACGGTGCCAGCA
TCTTGGCTCGATCTCAAGGGGTGGTGATGGGGATAGAACGCCGGTCACCT
TTTGGAGGCCGCCGCATGTTGTCTACGGAGGAAAGTACTCAAGCAGCCGC
TCATGCACCGTCCAAAGGTTCTTCGCTCCTTCAGCGGTTATCCTCCTTCC
TGGCTGGCGTGGGCGTGACGTCCTTGGTGGGCTACTATTTTCTCGTCCAG
GATGTGAAGCGGTCGACCGAGTCGGTACAAGCGGGCATGAGCGACATCAC
AAAGAGACTGGAGGCGCTGGAGAAGAGCAAATAAATGGTTTCTGGGGGGC
ACTGTCTGGCGTTTGCCTTGCGTCTTCCACACGGTGCCAGCATCTTGGCT
CGATCTCAAGGGGTGGTGATGGGGATAGAACGCCGGTCACCTTTTGGAGG
CCGCCGCATGTTGTCTACGGAGGAAAGTACTCAAGCAGCCGCTCATGCAC
CGTCCAAAGGTTCTTCGCTCCTTCAGCGGTTATCCTCCTTCCTGGCTGGC
GTGGGCGTGACGTCCTTGGTGGGCTACTATTTTCTCGTCCAGGATGTGAA
GCGGTCGACCGAGTCGGTACAAGCGGGCATGAGCGACATCACAAAGAGAC
TGGAGGCGCTGGAGAAGAGCAAATAA
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Synonyms
Publications