jgi.p|Nanoce1779_2|633365, mRNA_9239 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633365
Unique NamemRNA_9239
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1895
Alignment locationscaffold_33:78572..80560 -

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Properties
Property NameValue
TranscriptId633451
TrackFilteredModels2
ProteinId633365
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:78572..80560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633365gene_9239Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633365mRNA_9239-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9239CDS_9239Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9239 ID=mRNA_9239|Name=jgi.p|Nanoce1779_2|633365|organism=Nannochloropsis oceanica|type=mRNA|length=1895bp
ACAGACTCACAAACTTGTATCGCTCATATCTCCAACACCGCTGCCTTTGA
CAAACAAGATGGCACGGAGGATTTGATTACATTCCCTCACCTTTCACATA
TATGAGCCACAACCGACGGTTGGCATATTCTGGGATTAACATCTAGTTCG
TAATTCATCGTATTTGAATGATGTTGCAGATGCCAAACCCTCGCTTGAAC
CATGGCTTGCAAAGCCACAGGCGTTCCTTCAAAGTTGTCTTCACTGCAGC
GGCTTTTGGATTTCTCTTTAGTATTTGCCCATTAAGCATCTATAGTCTTT
TGGAAATCATACCAGCTTCCATTGAAATGGGTGTCCGACGCCTTGGCAAC
CCATCAGTACCATCACGAGCAAACAGCATCAAGCCTAAAGCCCGTTGTAT
CCTCCATATTGGTCCGCACAAGACGTCGACCACTTACATTCAGACTAAAT
TATGTCAAGAGCGCGACACACTGAAAGAGATGGGCTACATTGTGCCATTG
GGCAAAGCATGCGAAGGAAAATGTAGCCCTACTCGTTTTGCGGGAATGGC
AGGCCAATTGCGAGGGAATATGGAAATAGCTCGGCGATTTGGATGCTCTC
TCGATCCAATCAACGACTTTAAGGAAGCATTGCAATCTTCCGGGGACGCA
AATATTATCCTGTCAAGCGAGGGATTCGATATGCTAAGTGACGATCATGT
CCATGAATTAGCAAATCTCTTGGTAAATTACCAGACCACTGTGGTAATCT
ACTTTCGCCGCAAGCTGGGGCACCTTGTTAGCTACTACACTCAGGTGAAC
AAACATTATGGCGCGATTTTCCCTCCTTTGTCATTCAAGGAATTCATATG
GAGGTTCCTCAACGACGTAGACCCGGCAGCAGATCTATTCGATAACCCCA
TACCGCAACTAAACGGCCTGTGCTACACCAGGATGTTTGAAACTTATGGC
CGATATTTTGGAAAGGACAACCTTGCAGTCATTGACTACAACGAGATGGT
CGACGCCGGGAAAGATCCATGGGAAATCATAGTAAGAGATGTGATGGGGT
TCGAATCCTACGCTGACAAAACGAAGACTACTCATACTGAAGGTGATCAT
CACCAAGATAAGAGCAAAAAGATAAACGTCTCTCCAGATGCGTTTTCTCT
TTCAGTTGCGGGTTCTTTTTACCAATGGCGATGGACAAATCTTGGCCTTT
CCGCACCAACAGGACCAAATGCTGAAGAAATGACGGATATCAGTAAGCAG
TCAGACGTCGTCCACAATCACACATTGCTTCCTCGCTTGGAATGCATTTT
GCCGTTACTAGACCCTCTCAAAGATATGCTACCAAAAACATGCAGCACCC
TCGAGAGCGTGTGCAGCTTGTGGGAGCTACATGAAAAGGAAGCTCTGAGT
CGTCTGGCAAAAGAGGGATCACGCCTCCTATACTTTAAGAGGGACGATGA
CAACTCCAGCGATGGTAAAGGTAAAGGAAGCATTACCTTAGGAAAAAGGA
ACGAGACTGTATGCGAGGTGGATACTGTAGCACTGACATTGCATGACGGA
AAGCGACATTTGGATGAGGTTTTCCGACAAATTTCTACCAAGGTAGAACA
AACATGCAGTGGTGATATGATCACTCCTGGAGGAAGAATATCCCCATTTT
ACATGCAAAAATGATACAATGATATTAAAAAAACCTTAGAGCTCGGATCA
ATGTTGATGAATAGCAAAAGAGTTTCTCAGGTTATGCATGAAATGATATA
TTCAATAAAAGACCACAACCCTGTATGTTGAATACATCTCTGCCACGGTG
GATAGCAGCCAGACATGACTCCCCCTCAGTAAAAAGGCACAAACGAAGAC
GGCATAAGTAGGGGGAAAAGTAAGAGGAAGAAAAACATACACAAT
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protein sequence of jgi.p|Nanoce1779_2|633365

>mRNA_9239-protein ID=mRNA_9239-protein|Name=jgi.p|Nanoce1779_2|633365|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MMLQMPNPRLNHGLQSHRRSFKVVFTAAAFGFLFSICPLSIYSLLEIIPA
SIEMGVRRLGNPSVPSRANSIKPKARCILHIGPHKTSTTYIQTKLCQERD
TLKEMGYIVPLGKACEGKCSPTRFAGMAGQLRGNMEIARRFGCSLDPIND
FKEALQSSGDANIILSSEGFDMLSDDHVHELANLLVNYQTTVVIYFRRKL
GHLVSYYTQVNKHYGAIFPPLSFKEFIWRFLNDVDPAADLFDNPIPQLNG
LCYTRMFETYGRYFGKDNLAVIDYNEMVDAGKDPWEIIVRDVMGFESYAD
KTKTTHTEGDHHQDKSKKINVSPDAFSLSVAGSFYQWRWTNLGLSAPTGP
NAEEMTDISKQSDVVHNHTLLPRLECILPLLDPLKDMLPKTCSTLESVCS
LWELHEKEALSRLAKEGSRLLYFKRDDDNSSDGKGKGSITLGKRNETVCE
VDTVALTLHDGKRHLDEVFRQISTKVEQTCSGDMITPGGRISPFYMQK*
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mRNA from alignment at scaffold_33:78572..80560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9239 ID=mRNA_9239|Name=jgi.p|Nanoce1779_2|633365|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp|location=Sequence derived from alignment at scaffold_33:78572..80560- (Nannochloropsis oceanica)
ACAGACTCACAAACTTGTATCGCTCATATCTCCAACACCGCTGCCTTTGA
CAAACAAGTAAGCTTTTCTTTTCGTACATTTGCTGATGAGCAAATTTCCC
ACCATGAATATTTTTATGCATTACCTCTCTCTCCCCCTCCCCCCCGAAAA
GGATGGCACGGAGGATTTGATTACATTCCCTCACCTTTCACATATATGAG
CCACAACCGACGGTTGGCATATTCTGGGATTAACATCTAGTTCGTAATTC
ATCGTATTTGAATGATGTTGCAGATGCCAAACCCTCGCTTGAACCATGGC
TTGCAAAGCCACAGGCGTTCCTTCAAAGTTGTCTTCACTGCAGCGGCTTT
TGGATTTCTCTTTAGTATTTGCCCATTAAGCATCTATAGTCTTTTGGAAA
TCATACCAGCTTCCATTGAAATGGGTGTCCGACGCCTTGGCAACCCATCA
GTACCATCACGAGCAAACAGCATCAAGCCTAAAGCCCGTTGTATCCTCCA
TATTGGTCCGCACAAGACGTCGACCACTTACATTCAGACTAAATTATGTC
AAGAGCGCGACACACTGAAAGAGATGGGCTACATTGTGCCATTGGGCAAA
GCATGCGAAGGAAAATGTAGCCCTACTCGTTTTGCGGGAATGGCAGGCCA
ATTGCGAGGGAATATGGAAATAGCTCGGCGATTTGGATGCTCTCTCGATC
CAATCAACGACTTTAAGGAAGCATTGCAATCTTCCGGGGACGCAAATATT
ATCCTGTCAAGCGAGGGATTCGATATGCTAAGTGACGATCATGTCCATGA
ATTAGCAAATCTCTTGGTAAATTACCAGACCACTGTGGTAATCTACTTTC
GCCGCAAGCTGGGGCACCTTGTTAGCTACTACACTCAGGTGAACAAACAT
TATGGCGCGATTTTCCCTCCTTTGTCATTCAAGGAATTCATATGGAGGTT
CCTCAACGACGTAGACCCGGCAGCAGATCTATTCGATAACCCCATACCGC
AACTAAACGGCCTGTGCTACACCAGGATGTTTGAAACTTATGGCCGATAT
TTTGGAAAGGACAACCTTGCAGTCATTGACTACAACGAGATGGTCGACGC
CGGGAAAGATCCATGGGAAATCATAGTAAGAGATGTGATGGGGTTCGAAT
CCTACGCTGACAAAACGAAGACTACTCATACTGAAGGTGATCATCACCAA
GATAAGAGCAAAAAGATAAACGTCTCTCCAGATGCGTTTTCTCTTTCAGT
TGCGGGTTCTTTTTACCAATGGCGATGGACAAATCTTGGCCTTTCCGCAC
CAACAGGACCAAATGCTGAAGAAATGACGGATATCAGTAAGCAGTCAGAC
GTCGTCCACAATCACACATTGCTTCCTCGCTTGGAATGCATTTTGCCGTT
ACTAGACCCTCTCAAAGATATGCTACCAAAAACATGCAGCACCCTCGAGA
GCGTGTGCAGCTTGTGGGAGCTACATGAAAAGGAAGCTCTGAGTCGTCTG
GCAAAAGAGGGATCACGCCTCCTATACTTTAAGAGGGACGATGACAACTC
CAGCGATGGTAAAGGTAAAGGAAGCATTACCTTAGGAAAAAGGAACGAGA
CTGTATGCGAGGTGGATACTGTAGCACTGACATTGCATGACGGAAAGCGA
CATTTGGATGAGGTTTTCCGACAAATTTCTACCAAGGTAGAACAAACATG
CAGTGGTGATATGATCACTCCTGGAGGAAGAATATCCCCATTTTACATGC
AAAAATGATACAATGATATTAAAAAAACCTTAGAGCTCGGATCAATGTTG
ATGAATAGCAAAAGAGTTTCTCAGGTTATGCATGAAATGATATATTCAAT
AAAAGACCACAACCCTGTATGTTGAATACATCTCTGCCACGGTGGATAGC
AGCCAGACATGACTCCCCCTCAGTAAAAAGGCACAAACGAAGACGGCATA
AGTAGGGGGAAAAGTAAGAGGAAGAAAAACATACACAAT
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Coding sequence (CDS) from alignment at scaffold_33:78572..80560-

>mRNA_9239 ID=mRNA_9239|Name=jgi.p|Nanoce1779_2|633365|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at scaffold_33:78572..80560- (Nannochloropsis oceanica)
ATGATGTTGCAGATGCCAAACCCTCGCTTGAACCATGGCTTGCAAAGCCA
CAGGCGTTCCTTCAAAGTTGTCTTCACTGCAGCGGCTTTTGGATTTCTCT
TTAGTATTTGCCCATTAAGCATCTATAGTCTTTTGGAAATCATACCAGCT
TCCATTGAAATGGGTGTCCGACGCCTTGGCAACCCATCAGTACCATCACG
AGCAAACAGCATCAAGCCTAAAGCCCGTTGTATCCTCCATATTGGTCCGC
ACAAGACGTCGACCACTTACATTCAGACTAAATTATGTCAAGAGCGCGAC
ACACTGAAAGAGATGGGCTACATTGTGCCATTGGGCAAAGCATGCGAAGG
AAAATGTAGCCCTACTCGTTTTGCGGGAATGGCAGGCCAATTGCGAGGGA
ATATGGAAATAGCTCGGCGATTTGGATGCTCTCTCGATCCAATCAACGAC
TTTAAGGAAGCATTGCAATCTTCCGGGGACGCAAATATTATCCTGTCAAG
CGAGGGATTCGATATGCTAAGTGACGATCATGTCCATGAATTAGCAAATC
TCTTGGTAAATTACCAGACCACTGTGGTAATCTACTTTCGCCGCAAGCTG
GGGCACCTTGTTAGCTACTACACTCAGGTGAACAAACATTATGGCGCGAT
TTTCCCTCCTTTGTCATTCAAGGAATTCATATGGAGGTTCCTCAACGACG
TAGACCCGGCAGCAGATCTATTCGATAACCCCATACCGCAACTAAACGGC
CTGTGCTACACCAGGATGTTTGAAACTTATGGCCGATATTTTGGAAAGGA
CAACCTTGCAGTCATTGACTACAACGAGATGGTCGACGCCGGGAAAGATC
CATGGGAAATCATAGTAAGAGATGTGATGGGGTTCGAATCCTACGCTGAC
AAAACGAAGACTACTCATACTGAAGGTGATCATCACCAAGATAAGAGCAA
AAAGATAAACGTCTCTCCAGATGCGTTTTCTCTTTCAGTTGCGGGTTCTT
TTTACCAATGGCGATGGACAAATCTTGGCCTTTCCGCACCAACAGGACCA
AATGCTGAAGAAATGACGGATATCAGTAAGCAGTCAGACGTCGTCCACAA
TCACACATTGCTTCCTCGCTTGGAATGCATTTTGCCGTTACTAGACCCTC
TCAAAGATATGCTACCAAAAACATGCAGCACCCTCGAGAGCGTGTGCAGC
TTGTGGGAGCTACATGAAAAGGAAGCTCTGAGTCGTCTGGCAAAAGAGGG
ATCACGCCTCCTATACTTTAAGAGGGACGATGACAACTCCAGCGATGGTA
AAGGTAAAGGAAGCATTACCTTAGGAAAAAGGAACGAGACTGTATGCGAG
GTGGATACTGTAGCACTGACATTGCATGACGGAAAGCGACATTTGGATGA
GGTTTTCCGACAAATTTCTACCAAGGTAGAACAAACATGCAGTGGTGATA
TGATCACTCCTGGAGGAAGAATATCCCCATTTTACATGCAAAAATGA
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Synonyms
Publications