jgi.p|Nanoce1779_2|533242, mRNA_9235 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533242
Unique Name	mRNA_9235
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1056
Alignment location	scaffold_33:67851..69483 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	533328
Track	FilteredModels2
ProteinId	533242

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:67851..69483 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533242	gene_9235	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533242	mRNA_9235-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9235	CDS_9235	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:67851..69483-
coding sequence from alignment at scaffold_33:67851..69483-

mRNA sequence

>mRNA_9235 ID=mRNA_9235|Name=jgi.p|Nanoce1779_2|533242|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
ATGACCGCTACCCACTCCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTCCAGCACCAGCAGCAGCAGCAGCATA
ACTCCACCCTCACGAAAATTGGCCCCTTGAAGTGGGAGGCTCCCGAATCT
CTTCAACACAAGGAATACTCCGAAAAGACCGACGCCTATTCCTACGCCGT
CTGCCTCTACGAGATGCTGGCCCAGTCCGAGCCCTGGGCCAAAGTAACGC
ACGCTCAGGTCGCATTCAACGTCCTGAGCGGGAAACGGCTGAAAATTCCG
ATAAACACCGATCCGATCCTTGCCCTGATTATGATGGGCTGTTGGGAGGG
AGATCCGAAGCGACGACCGAACTTCGAGTTCATCCATAGGAGGCTCCGCG
AGCGTTTTGTGGTGCTCCAGAATGAGGAGAGGGAGATCGGGGAGGAGAAG
GGCCTGGTAGTCATGATGCGGCAAGGGACGACATTTTACAAACTACCCTA
CCTCAAGGGGAAGCCACACAAGCGCCAATTTAAGGTCTCGGAGGACCTTC
GTCGACTCAAGTGGTGCTTCCTCCCCACCCGCAACTTCATGCAACGGGCT
CGAGACCCCGTCCGTCCAGCCACGAAGCAAGTCTTCCTCACCGAGGTCCA
AGACATTCGTGTGGGGATGCGCACGGCGAACTTTAAACGGCTCGAATCGA
CTTTTTTCGGCCCGTCCCTCCTACCCTCCTCCTCATCCTCGTCCTCCCCC
TCTTCCTCCTTCTTTCAGCCGAACGAGATGAACAAGGGAGAAGATAAATT
TCGGGGGAGGCAGGCGACGGCCTTTTCCATCATCACACAAGAGAGGACGA
TCGACGTCTTGTGCCCTTCCCCTGACGTCATGGACTGCTGGGTCACCGGC
CTGAGGTTCCTCGTCGACCGCCTTCGCCCCCCTCCTCCCTCCCTCTCTCC
CATCGTGGAGAAACGGGCAGTTTTGGCGCGACTGAGACGAGGCGGCTTTC
TGTTGAAATTCGGTCAAATTGGACGGCCTCACGAACGGTACGTATCTCCT
GACTAG

protein sequence of jgi.p|Nanoce1779_2|533242

>mRNA_9235-protein ID=mRNA_9235-protein|Name=jgi.p|Nanoce1779_2|533242|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MTATHSPPSLPSSLPPSLPPSLPPFQHQQQQQHNSTLTKIGPLKWEAPES
LQHKEYSEKTDAYSYAVCLYEMLAQSEPWAKVTHAQVAFNVLSGKRLKIP
INTDPILALIMMGCWEGDPKRRPNFEFIHRRLRERFVVLQNEEREIGEEK
GLVVMMRQGTTFYKLPYLKGKPHKRQFKVSEDLRRLKWCFLPTRNFMQRA
RDPVRPATKQVFLTEVQDIRVGMRTANFKRLESTFFGPSLLPSSSSSSSP
SSSFFQPNEMNKGEDKFRGRQATAFSIITQERTIDVLCPSPDVMDCWVTG
LRFLVDRLRPPPPSLSPIVEKRAVLARLRRGGFLLKFGQIGRPHERYVSP
D*

mRNA from alignment at scaffold_33:67851..69483-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9235 ID=mRNA_9235|Name=jgi.p|Nanoce1779_2|533242|organism=Nannochloropsis oceanica|type=mRNA|length=1633bp|location=Sequence derived from alignment at scaffold_33:67851..69483- (Nannochloropsis oceanica)
ATGACCGCTACCCACTCCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTCCAGCACCAGCAGCAGCAGCAGCATA
ACTCCACCCTCACGAAAATTGGCCCCTTGAAGTGGGAGGCTCCCGAATCT
CTTCAACACAAGGAATACTCCGAAAAGACCGACGCCTATTCCTACGCCGT
CTGCCTCTACGAGATGCTGGCCCAGGTATGGGTGCATACAACGGCCCTCC
CGCCCCTTCTCTCTCCCTTCCTCCTTCCCTCCCTTTCCACGTGCACCATT
TGGGGTCCAATTTACCAAGCCTGACACATCGAGTCCTGTATCTCTCGCCC
TCCCTCCCTCCCATCCTCCCTCCCCAGTCCGAGCCCTGGGCCAAAGTAAC
GCACGCTCAGGTCGCATTCAACGTCCTGAGCGGGAAACGGCTGAAAATTC
CGATAAACACCGATCCGATCCTTGCCCTGATTATGATGGGCTGTTGGGAG
GGAGATCCGAAGCGACGACCGAACTTCGAGTTCATCCATAGGAGGCTCCG
CGAGCGTTTTGTGGTGCTCCAGAATGAGGTGAGGGATAACGCATTTTGAC
GTGTGTGTCTTCTTTATGTAGTGGGCTTTATTTTGGTCGTTTGGTTGTCT
GTTTGTTTGTCTAGGCATGTGACAAATCTAATCCATGCCTTGATGGTTTC
ATCTAATTCATGAATTAATTCCTTCATGGTTTCACATTCATTTATTCATT
AAGGAAAATAGGCGACCGCGAAGTCAATCTCCTCTTTTGCAGCGGTGCTT
TATTTCTTTCTCACATGCCTCACACACACCCCACCCATTTAGGAGAGGGA
GATCGGGGAGGAGAAGGGCCTGGTAGTCATGATGCGGCAAGGGACGACAT
TTTACAAACTACCCTACCTCAAGGGGAAGCCACACAAGCGCCAATTTAAG
GTGAGGAGAAGGAGGAAGAGGGAGGGAGAGAGGGAGGGAGAGTGGGGGGG
AGGGAGGGTGAACCATTGCTGTGGGACAAGTCTGTCAAACCCTAATCAAC
CCAATCAAAAACCCAATCAAACCCCCCATCAAACGTAATCAAACTTTACC
CAACCAACCAGGTCTCGGAGGACCTTCGTCGACTCAAGTGGTGCTTCCTC
CCCACCCGCAACTTCATGCAACGGGCTCGAGACCCCGTCCGTCCAGCCAC
GAAGCAAGTCTTCCTCACCGAGGTCCAAGACATTCGTGTGGGGATGCGCA
CGGCGAACTTTAAACGGCTCGAATCGACTTTTTTCGGCCCGTCCCTCCTA
CCCTCCTCCTCATCCTCGTCCTCCCCCTCTTCCTCCTTCTTTCAGCCGAA
CGAGATGAACAAGGGAGAAGATAAATTTCGGGGGAGGCAGGCGACGGCCT
TTTCCATCATCACACAAGAGAGGACGATCGACGTCTTGTGCCCTTCCCCT
GACGTCATGGACTGCTGGGTCACCGGCCTGAGGTTCCTCGTCGACCGCCT
TCGCCCCCCTCCTCCCTCCCTCTCTCCCATCGTGGAGAAACGGGCAGTTT
TGGCGCGACTGAGACGAGGCGGCTTTCTGTTGAAATTCGGTCAAATTGGA
CGGCCTCACGAACGGTACGTATCTCCTGACTAG

Coding sequence (CDS) from alignment at scaffold_33:67851..69483-

>mRNA_9235 ID=mRNA_9235|Name=jgi.p|Nanoce1779_2|533242|organism=Nannochloropsis oceanica|type=CDS|length=4224bp|location=Sequence derived from alignment at scaffold_33:67851..69483- (Nannochloropsis oceanica)
GTCTCGGAGGACCTTCGTCGACTCAAGTGGTGCTTCCTCCCCACCCGCAA
CTTCATGCAACGGGCTCGAGACCCCGTCCGTCCAGCCACGAAGCAAGTCT
TCCTCACCGAGGTCCAAGACATTCGTGTGGGGATGCGCACGGCGAACTTT
AAACGGCTCGAATCGACTTTTTTCGGCCCGTCCCTCCTACCCTCCTCCTC
ATCCTCGTCCTCCCCCTCTTCCTCCTTCTTTCAGCCGAACGAGATGAACA
AGGGAGAAGATAAATTTCGGGGGAGGCAGGCGACGGCCTTTTCCATCATC
ACACAAGAGAGGACGATCGACGTCTTGTGCCCTTCCCCTGACGTCATGGA
CTGCTGGGTCACCGGCCTGAGGTTCCTCGTCGACCGCCTTCGCCCCCCTC
CTCCCTCCCTCTCTCCCATCGTGGAGAAACGGGCAGTTTTGGCGCGACTG
AGACGAGGCGGCTTTCTGTTGAAATTCGGTCAAATTGGACGGCCTCACGA
ACGGTACGTATCTCCTGACTAGGAGAGGGAGATCGGGGAGGAGAAGGGCC
TGGTAGTCATGATGCGGCAAGGGACGACATTTTACAAACTACCCTACCTC
AAGGGGAAGCCACACAAGCGCCAATTTAAGTCCGAGCCCTGGGCCAAAGT
AACGCACGCTCAGGTCGCATTCAACGTCCTGAGCGGGAAACGGCTGAAAA
TTCCGATAAACACCGATCCGATCCTTGCCCTGATTATGATGGGCTGTTGG
GAGGGAGATCCGAAGCGACGACCGAACTTCGAGTTCATCCATAGGAGGCT
CCGCGAGCGTTTTGTGGTGCTCCAGAATGAGATGACCGCTACCCACTCCC
CTCCCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTTCCAGCACCAGCAGCAGCAGCAGCATAACTCCACCCTCACGAAAAT
TGGCCCCTTGAAGTGGGAGGCTCCCGAATCTCTTCAACACAAGGAATACT
CCGAAAAGACCGACGCCTATTCCTACGCCGTCTGCCTCTACGAGATGCTG
GCCCAGGTCTCGGAGGACCTTCGTCGACTCAAGTGGTGCTTCCTCCCCAC
CCGCAACTTCATGCAACGGGCTCGAGACCCCGTCCGTCCAGCCACGAAGC
AAGTCTTCCTCACCGAGGTCCAAGACATTCGTGTGGGGATGCGCACGGCG
AACTTTAAACGGCTCGAATCGACTTTTTTCGGCCCGTCCCTCCTACCCTC
CTCCTCATCCTCGTCCTCCCCCTCTTCCTCCTTCTTTCAGCCGAACGAGA
TGAACAAGGGAGAAGATAAATTTCGGGGGAGGCAGGCGACGGCCTTTTCC
ATCATCACACAAGAGAGGACGATCGACGTCTTGTGCCCTTCCCCTGACGT
CATGGACTGCTGGGTCACCGGCCTGAGGTTCCTCGTCGACCGCCTTCGCC
CCCCTCCTCCCTCCCTCTCTCCCATCGTGGAGAAACGGGCAGTTTTGGCG
CGACTGAGACGAGGCGGCTTTCTGTTGAAATTCGGTCAAATTGGACGGCC
TCACGAACGGTACGTATCTCCTGACTAGGAGAGGGAGATCGGGGAGGAGA
AGGGCCTGGTAGTCATGATGCGGCAAGGGACGACATTTTACAAACTACCC
TACCTCAAGGGGAAGCCACACAAGCGCCAATTTAAGTCCGAGCCCTGGGC
CAAAGTAACGCACGCTCAGGTCGCATTCAACGTCCTGAGCGGGAAACGGC
TGAAAATTCCGATAAACACCGATCCGATCCTTGCCCTGATTATGATGGGC
TGTTGGGAGGGAGATCCGAAGCGACGACCGAACTTCGAGTTCATCCATAG
GAGGCTCCGCGAGCGTTTTGTGGTGCTCCAGAATGAGATGACCGCTACCC
ACTCCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTCCAGCACCAGCAGCAGCAGCAGCATAACTCCACCCTCAC
GAAAATTGGCCCCTTGAAGTGGGAGGCTCCCGAATCTCTTCAACACAAGG
AATACTCCGAAAAGACCGACGCCTATTCCTACGCCGTCTGCCTCTACGAG
ATGCTGGCCCAGGTCTCGGAGGACCTTCGTCGACTCAAGTGGTGCTTCCT
CCCCACCCGCAACTTCATGCAACGGGCTCGAGACCCCGTCCGTCCAGCCA
CGAAGCAAGTCTTCCTCACCGAGGTCCAAGACATTCGTGTGGGGATGCGC
ACGGCGAACTTTAAACGGCTCGAATCGACTTTTTTCGGCCCGTCCCTCCT
ACCCTCCTCCTCATCCTCGTCCTCCCCCTCTTCCTCCTTCTTTCAGCCGA
ACGAGATGAACAAGGGAGAAGATAAATTTCGGGGGAGGCAGGCGACGGCC
TTTTCCATCATCACACAAGAGAGGACGATCGACGTCTTGTGCCCTTCCCC
TGACGTCATGGACTGCTGGGTCACCGGCCTGAGGTTCCTCGTCGACCGCC
TTCGCCCCCCTCCTCCCTCCCTCTCTCCCATCGTGGAGAAACGGGCAGTT
TTGGCGCGACTGAGACGAGGCGGCTTTCTGTTGAAATTCGGTCAAATTGG
ACGGCCTCACGAACGGTACGTATCTCCTGACTAGGAGAGGGAGATCGGGG
AGGAGAAGGGCCTGGTAGTCATGATGCGGCAAGGGACGACATTTTACAAA
CTACCCTACCTCAAGGGGAAGCCACACAAGCGCCAATTTAAGTCCGAGCC
CTGGGCCAAAGTAACGCACGCTCAGGTCGCATTCAACGTCCTGAGCGGGA
AACGGCTGAAAATTCCGATAAACACCGATCCGATCCTTGCCCTGATTATG
ATGGGCTGTTGGGAGGGAGATCCGAAGCGACGACCGAACTTCGAGTTCAT
CCATAGGAGGCTCCGCGAGCGTTTTGTGGTGCTCCAGAATGAGATGACCG
CTACCCACTCCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTTCCAGCACCAGCAGCAGCAGCAGCATAACTCCAC
CCTCACGAAAATTGGCCCCTTGAAGTGGGAGGCTCCCGAATCTCTTCAAC
ACAAGGAATACTCCGAAAAGACCGACGCCTATTCCTACGCCGTCTGCCTC
TACGAGATGCTGGCCCAGGTCTCGGAGGACCTTCGTCGACTCAAGTGGTG
CTTCCTCCCCACCCGCAACTTCATGCAACGGGCTCGAGACCCCGTCCGTC
CAGCCACGAAGCAAGTCTTCCTCACCGAGGTCCAAGACATTCGTGTGGGG
ATGCGCACGGCGAACTTTAAACGGCTCGAATCGACTTTTTTCGGCCCGTC
CCTCCTACCCTCCTCCTCATCCTCGTCCTCCCCCTCTTCCTCCTTCTTTC
AGCCGAACGAGATGAACAAGGGAGAAGATAAATTTCGGGGGAGGCAGGCG
ACGGCCTTTTCCATCATCACACAAGAGAGGACGATCGACGTCTTGTGCCC
TTCCCCTGACGTCATGGACTGCTGGGTCACCGGCCTGAGGTTCCTCGTCG
ACCGCCTTCGCCCCCCTCCTCCCTCCCTCTCTCCCATCGTGGAGAAACGG
GCAGTTTTGGCGCGACTGAGACGAGGCGGCTTTCTGTTGAAATTCGGTCA
AATTGGACGGCCTCACGAACGGTACGTATCTCCTGACTAGGAGAGGGAGA
TCGGGGAGGAGAAGGGCCTGGTAGTCATGATGCGGCAAGGGACGACATTT
TACAAACTACCCTACCTCAAGGGGAAGCCACACAAGCGCCAATTTAAGTC
CGAGCCCTGGGCCAAAGTAACGCACGCTCAGGTCGCATTCAACGTCCTGA
GCGGGAAACGGCTGAAAATTCCGATAAACACCGATCCGATCCTTGCCCTG
ATTATGATGGGCTGTTGGGAGGGAGATCCGAAGCGACGACCGAACTTCGA
GTTCATCCATAGGAGGCTCCGCGAGCGTTTTGTGGTGCTCCAGAATGAGA
TGACCGCTACCCACTCCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTTCCAGCACCAGCAGCAGCAGCAGCATAA
CTCCACCCTCACGAAAATTGGCCCCTTGAAGTGGGAGGCTCCCGAATCTC
TTCAACACAAGGAATACTCCGAAAAGACCGACGCCTATTCCTACGCCGTC
TGCCTCTACGAGATGCTGGCCCAG

Synonyms

Publications