jgi.p|Nanoce1779_2|633362, mRNA_9234 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633362
Unique Name	mRNA_9234
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2036
Alignment location	scaffold_33:64097..66132 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	633448
Track	FilteredModels2
ProteinId	633362

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:64097..66132 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633362	gene_9234	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9234	CDS_9234	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633362	mRNA_9234-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:64097..66132-
coding sequence from alignment at scaffold_33:64097..66132-

mRNA sequence

>mRNA_9234 ID=mRNA_9234|Name=jgi.p|Nanoce1779_2|633362|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp
AGAGAAGGAGGAAGAGGAGGAGGAGGAGGGGGCGGGGACGAAGGAGGGGA
GGGTTGCGAGGGGGTTCTGGATGATGTGTATACGGACGCGTCGTCCTACC
TCCAGTTTTTGCATGAGGACAAGAATTAGAGATATAGGGAGGAACTGATT
TCGATGGACGGTCAGAGAGATAGCTTTCAGTCACGGGTAGAAATAGAGAA
ATAGGAAGGGTGGCAGGGAAAGAAGGCGTGAAGGTCGCTGCCCTAGAGAC
AGAGGGAGAGCGTGCGTGTCTCCTTTGCGGATGCGTAGGTGAAGACCTTC
TCTAAGCCCAACGGCTCTTTGACGAAAGATGGATCCGATTAGAATGTAGG
AAACCCTCTTGTAAAAGAGAGAGGGAAATAATCAAAAATAGAAAGAGTAA
ATCAACTGATGGAGAGGGATAAGAAAGGTGTATTTCTCGCTGAAATGAAG
CAAATAAACTCACAGTAAGGGAAAGGGGACCGACAACTTCTTGTCTTCCA
GCCCTCCTCCCACCTCCAAAAAGATTGTATATCAATAAGCGTAAGAGAAA
AGAAGACGAAAGGTAAGGAAATATCACGATCAAATGCACGAAGAGACTAA
AATATTTTGATTTTGATGTTGCCGGTATGTGTGGGCGCGTAAATAAGATG
ACTGTGGAGAGGAGACCTTGCTCACGCTACTTGTTCGCCCTTGATTGTCA
CCTTGCTTGCTTGACAATGGAATTATTCCCAAAATGTAGAGGATCTTGCT
TGTATCGTCCTCTTTCTACAGTTGTAGGGGTTGTTCGTTTTTTCCCGAAG
CCGGCCTGGCGTCACTTGCTCCTTGGGCTCTCTTCCTCAAACCCCACCAT
CATTCATGTACGTAGCCATGACTTCTTTTTCTCACACATGGTTAATAAAA
CAGACAGGAAGTATACGATGCCCTCGGGCATAGAGGCATGTACGGCGCCC
GCGGACATAGAGACGCGACTCCGGGCCTTAATCAAAAAAGCACTTGAGGA
AGAAAAGAGCCGTATGGACAACGACGACAACGACGACGCCGATGAGAAGC
AAGACAACACCACCAATCACGAGAAGAGCAGCACCAACGGTAGTAGTAAA
GGACAAAGTCTCTCTGTCCGTCGTCTGGCCACGGCCCTTCACAAGGCCGA
AGCTCAGTTGCGGACCGCCATCCTCATGCAGCAGCGTCAGTCCACCACCA
GCACCGCCTCTACAACCCACGACGATGACAACTTCGAAGTGGAAGCAGAA
GAAGCCCAAACTCAACTCCTCGCCGCCCTGGACCGCGCCCTCCACCCCTA
TCAGACATCCCTACGTCACTCTCTCTCCTCAATCTACCACGCCGACTCCC
GCCTCTCCCTCTCCCTCAAGCAAGCCCAGAGCCACCTTGCCTCCTCTTCC
CACGCTCAACAACGGCCGATTAATATCCTAGAAGCTCTACGGCTCGCACA
TCGTTTCCGTGTCGTGTCATCAGCACCGCCTGGGTGGGAAGGGGGAGGGC
GGGAGGGAGGTATATTTAATTTCTTGCCCCGTCACCCCTACATGCCTGGA
AGCGAGTGCTTGGTAGCCTCGTTGCTCAGGAAAGAACACGTCCGGAACCA
GAAGGAGGTTCGAAAGAGGAAAAAGAGAATGCGAGAAGCAGAAAGGAAAG
GGAAGGCGGGAGGGAAGGAGGCGGATGCGATGGACATTGTCAGACAGCTC
TCAGAGAGTGGCTCGCTTGGTGCCCCGCCCCCCGGCTGGCAACCTGGGCA
GGAGCTGGCGTTGAACGATGAGGTGCTGCAGAAATTGAGGAAACAGCAGC
AGCAGCAGCAGTTGGAGGAAATGGAAAGGGACAAGGTGAAAGAGCCAGTT
TTGGGAAAGTCGGATGGTACTGCGGCTGCAGAAGGGGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGAGAGAGGAGGAGAAGGGATTGGAGGAAGGG
CTGCGCAGGCGAAGCCGAAGAAGCAGACCTTTATGGATTCGTCATCGGAA
GAGGAGGAAGGGGACGAGGATGAGGGAGAGGAGTAG

protein sequence of jgi.p|Nanoce1779_2|633362

>mRNA_9234-protein ID=mRNA_9234-protein|Name=jgi.p|Nanoce1779_2|633362|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp
MCGRVNKMTVERRPCSRYLFALDCHLACLTMELFPKCRGSCLYRPLSTVV
GVVRFFPKPAWRHLLLGLSSSNPTIIHVRSHDFFFSHMVNKTDRKYTMPS
GIEACTAPADIETRLRALIKKALEEEKSRMDNDDNDDADEKQDNTTNHEK
SSTNGSSKGQSLSVRRLATALHKAEAQLRTAILMQQRQSTTSTASTTHDD
DNFEVEAEEAQTQLLAALDRALHPYQTSLRHSLSSIYHADSRLSLSLKQA
QSHLASSSHAQQRPINILEALRLAHRFRVVSSAPPGWEGGGREGGIFNFL
PRHPYMPGSECLVASLLRKEHVRNQKEVRKRKKRMREAERKGKAGGKEAD
AMDIVRQLSESGSLGAPPPGWQPGQELALNDEVLQKLRKQQQQQQLEEME
RDKVKEPVLGKSDGTAAAEGGGGGGGGGGGGERGGEGIGGRAAQAKPKKQ
TFMDSSSEEEEGDEDEGEE*

mRNA from alignment at scaffold_33:64097..66132-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9234 ID=mRNA_9234|Name=jgi.p|Nanoce1779_2|633362|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp|location=Sequence derived from alignment at scaffold_33:64097..66132- (Nannochloropsis oceanica)
AGAGAAGGAGGAAGAGGAGGAGGAGGAGGGGGCGGGGACGAAGGAGGGGA
GGGTTGCGAGGGGGTTCTGGATGATGTGTATACGGACGCGTCGTCCTACC
TCCAGTTTTTGCATGAGGACAAGAATTAGAGATATAGGGAGGAACTGATT
TCGATGGACGGTCAGAGAGATAGCTTTCAGTCACGGGTAGAAATAGAGAA
ATAGGAAGGGTGGCAGGGAAAGAAGGCGTGAAGGTCGCTGCCCTAGAGAC
AGAGGGAGAGCGTGCGTGTCTCCTTTGCGGATGCGTAGGTGAAGACCTTC
TCTAAGCCCAACGGCTCTTTGACGAAAGATGGATCCGATTAGAATGTAGG
AAACCCTCTTGTAAAAGAGAGAGGGAAATAATCAAAAATAGAAAGAGTAA
ATCAACTGATGGAGAGGGATAAGAAAGGTGTATTTCTCGCTGAAATGAAG
CAAATAAACTCACAGTAAGGGAAAGGGGACCGACAACTTCTTGTCTTCCA
GCCCTCCTCCCACCTCCAAAAAGATTGTATATCAATAAGCGTAAGAGAAA
AGAAGACGAAAGGTAAGGAAATATCACGATCAAATGCACGAAGAGACTAA
AATATTTTGATTTTGATGTTGCCGGTATGTGTGGGCGCGTAAATAAGATG
ACTGTGGAGAGGAGACCTTGCTCACGCTACTTGTTCGCCCTTGATTGTCA
CCTTGCTTGCTTGACAATGGAATTATTCCCAAAATGTAGAGGATCTTGCT
TGTATCGTCCTCTTTCTACAGTTGTAGGGGTTGTTCGTTTTTTCCCGAAG
CCGGCCTGGCGTCACTTGCTCCTTGGGCTCTCTTCCTCAAACCCCACCAT
CATTCATGTACGTAGCCATGACTTCTTTTTCTCACACATGGTTAATAAAA
CAGACAGGAAGTATACGATGCCCTCGGGCATAGAGGCATGTACGGCGCCC
GCGGACATAGAGACGCGACTCCGGGCCTTAATCAAAAAAGCACTTGAGGA
AGAAAAGAGCCGTATGGACAACGACGACAACGACGACGCCGATGAGAAGC
AAGACAACACCACCAATCACGAGAAGAGCAGCACCAACGGTAGTAGTAAA
GGACAAAGTCTCTCTGTCCGTCGTCTGGCCACGGCCCTTCACAAGGCCGA
AGCTCAGTTGCGGACCGCCATCCTCATGCAGCAGCGTCAGTCCACCACCA
GCACCGCCTCTACAACCCACGACGATGACAACTTCGAAGTGGAAGCAGAA
GAAGCCCAAACTCAACTCCTCGCCGCCCTGGACCGCGCCCTCCACCCCTA
TCAGACATCCCTACGTCACTCTCTCTCCTCAATCTACCACGCCGACTCCC
GCCTCTCCCTCTCCCTCAAGCAAGCCCAGAGCCACCTTGCCTCCTCTTCC
CACGCTCAACAACGGCCGATTAATATCCTAGAAGCTCTACGGCTCGCACA
TCGTTTCCGTGTCGTGTCATCAGCACCGCCTGGGTGGGAAGGGGGAGGGC
GGGAGGGAGGTATATTTAATTTCTTGCCCCGTCACCCCTACATGCCTGGA
AGCGAGTGCTTGGTAGCCTCGTTGCTCAGGAAAGAACACGTCCGGAACCA
GAAGGAGGTTCGAAAGAGGAAAAAGAGAATGCGAGAAGCAGAAAGGAAAG
GGAAGGCGGGAGGGAAGGAGGCGGATGCGATGGACATTGTCAGACAGCTC
TCAGAGAGTGGCTCGCTTGGTGCCCCGCCCCCCGGCTGGCAACCTGGGCA
GGAGCTGGCGTTGAACGATGAGGTGCTGCAGAAATTGAGGAAACAGCAGC
AGCAGCAGCAGTTGGAGGAAATGGAAAGGGACAAGGTGAAAGAGCCAGTT
TTGGGAAAGTCGGATGGTACTGCGGCTGCAGAAGGGGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGAGAGAGGAGGAGAAGGGATTGGAGGAAGGG
CTGCGCAGGCGAAGCCGAAGAAGCAGACCTTTATGGATTCGTCATCGGAA
GAGGAGGAAGGGGACGAGGATGAGGGAGAGGAGTAG

Coding sequence (CDS) from alignment at scaffold_33:64097..66132-

>mRNA_9234 ID=mRNA_9234|Name=jgi.p|Nanoce1779_2|633362|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_33:64097..66132- (Nannochloropsis oceanica)
ATGTGTGGGCGCGTAAATAAGATGACTGTGGAGAGGAGACCTTGCTCACG
CTACTTGTTCGCCCTTGATTGTCACCTTGCTTGCTTGACAATGGAATTAT
TCCCAAAATGTAGAGGATCTTGCTTGTATCGTCCTCTTTCTACAGTTGTA
GGGGTTGTTCGTTTTTTCCCGAAGCCGGCCTGGCGTCACTTGCTCCTTGG
GCTCTCTTCCTCAAACCCCACCATCATTCATGTACGTAGCCATGACTTCT
TTTTCTCACACATGGTTAATAAAACAGACAGGAAGTATACGATGCCCTCG
GGCATAGAGGCATGTACGGCGCCCGCGGACATAGAGACGCGACTCCGGGC
CTTAATCAAAAAAGCACTTGAGGAAGAAAAGAGCCGTATGGACAACGACG
ACAACGACGACGCCGATGAGAAGCAAGACAACACCACCAATCACGAGAAG
AGCAGCACCAACGGTAGTAGTAAAGGACAAAGTCTCTCTGTCCGTCGTCT
GGCCACGGCCCTTCACAAGGCCGAAGCTCAGTTGCGGACCGCCATCCTCA
TGCAGCAGCGTCAGTCCACCACCAGCACCGCCTCTACAACCCACGACGAT
GACAACTTCGAAGTGGAAGCAGAAGAAGCCCAAACTCAACTCCTCGCCGC
CCTGGACCGCGCCCTCCACCCCTATCAGACATCCCTACGTCACTCTCTCT
CCTCAATCTACCACGCCGACTCCCGCCTCTCCCTCTCCCTCAAGCAAGCC
CAGAGCCACCTTGCCTCCTCTTCCCACGCTCAACAACGGCCGATTAATAT
CCTAGAAGCTCTACGGCTCGCACATCGTTTCCGTGTCGTGTCATCAGCAC
CGCCTGGGTGGGAAGGGGGAGGGCGGGAGGGAGGTATATTTAATTTCTTG
CCCCGTCACCCCTACATGCCTGGAAGCGAGTGCTTGGTAGCCTCGTTGCT
CAGGAAAGAACACGTCCGGAACCAGAAGGAGGTTCGAAAGAGGAAAAAGA
GAATGCGAGAAGCAGAAAGGAAAGGGAAGGCGGGAGGGAAGGAGGCGGAT
GCGATGGACATTGTCAGACAGCTCTCAGAGAGTGGCTCGCTTGGTGCCCC
GCCCCCCGGCTGGCAACCTGGGCAGGAGCTGGCGTTGAACGATGAGGTGC
TGCAGAAATTGAGGAAACAGCAGCAGCAGCAGCAGTTGGAGGAAATGGAA
AGGGACAAGGTGAAAGAGCCAGTTTTGGGAAAGTCGGATGGTACTGCGGC
TGCAGAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGAGAG
GAGGAGAAGGGATTGGAGGAAGGGCTGCGCAGGCGAAGCCGAAGAAGCAG
ACCTTTATGGATTCGTCATCGGAAGAGGAGGAAGGGGACGAGGATGAGGG
AGAGGAGTAG

Synonyms

Publications