jgi.p|Nanoce1779_2|605751, mRNA_9231 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605751
Unique NamemRNA_9231
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length689
Alignment locationscaffold_33:47199..48322 -

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Properties
Property NameValue
TranscriptId605837
TrackFilteredModels2
ProteinId605751
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:47199..48322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605751gene_9231Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605751mRNA_9231-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9231CDS_9231Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9231 ID=mRNA_9231|Name=jgi.p|Nanoce1779_2|605751|organism=Nannochloropsis oceanica|type=mRNA|length=689bp
GGGAGGGAGGGAGGGAAGGCAAGGAGGGCAGGGCACAAGGGAGGGAGGGA
GGGAGGAAGGGAAGGAGGATAGCTTGCTCCCGATTGCCCAGGCGCTGTCT
CAATTACCCTCATCTTATTGGGAGTCGTCGTCGGGGGTGATTGAAAATGC
CACGGCAAATGAGGACCCAGATCACGTCATGGCCTTGTCGTCGGATCAGA
TTCGCTTGTACCACGTATGGAAACTGAGCAAACGCCTTCGCTTCCTTTGC
ATGGTCTCTTTGGCCCTCGGGCTTTTTTCCACCCTCCAGCTCAAAACGGT
CTTCACCCTTCTCCTCGTGCCCTTTTTGGGATGGTACTCCTCCCGGGTCT
ACTCCCTCCTCACCGCCGTCGGCTTCTGCCTCTTCCAGTGCCTCCCCATT
GCCCTTCGTCTTGATGCCCTCTTTACCGGACGGGTAACAGAATCCAGTAT
CAAGGTCCTCTACAGCCTCTGCATCCTTCTTGAATGTTTCCTTGTCCGCT
TGGCGTTCCTCTTTGTCCTCCAGCTACGGCAGTGTCGCCCTGTCGGTACG
TTGCCCTCCTTCCCTCCCTCCCTCTTTCCTTCCCTTAGCGCTCGATATCT
CGCGCGCGTTGTCGATTCCTCTCAATCCTCCCATCCTCCCCTTCCTCCCT
CCCTCCCTCCTCCTCCATAATACTTTCGTTCCGCCAAAC
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protein sequence of jgi.p|Nanoce1779_2|605751

>mRNA_9231-protein ID=mRNA_9231-protein|Name=jgi.p|Nanoce1779_2|605751|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MALSSDQIRLYHVWKLSKRLRFLCMVSLALGLFSTLQLKTVFTLLLVPFL
GWYSSRVYSLLTAVGFCLFQCLPIALRLDALFTGRVTESSIKVLYSLCIL
LECFLVRLAFLFVLQLRQCRPVGTLPSFPPSLFPSLSARYLARVVDSSQS
SHPPLPPSLPPPP*
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mRNA from alignment at scaffold_33:47199..48322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9231 ID=mRNA_9231|Name=jgi.p|Nanoce1779_2|605751|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp|location=Sequence derived from alignment at scaffold_33:47199..48322- (Nannochloropsis oceanica)
GGGAGGGAGGGAGGGAAGGCAAGGAGGGCAGGGCACAAGGGAGGGAGGGA
GGGAGGAAGGGAAGGAGGATAGCTTGCTCCCGATTGCCCAGGCGCTGTCT
CAATTACCCTCATCTTATTGGGAGTCGTCGTCGGGGGTGATTGAAAATGC
CACGGCAAATGAGGTGAGGGAGGGAGGGAGGGAGGGAGGAAAGAATCTGA
CGACAGAAAGTGATTGAAAGTAGGTTTACTTCACGAGGCTAAGGCCCCTC
CCTCCCTCCTGTAGGACCCAGATCACGTCATGGCCTTGTCGTCGGATCAG
ATTCGCTTGTACCACGTAAGGCTCGAGGAAGGGAGGGAGGGAGGGAGGGA
AGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAAGGAAGAAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAAGAAGGAAAGATTCCCACCCTACTATC
CCCCTCCTCCTCCCACCCACCCCCTTCCCCTCCCTTCCTCCCCCCCCGCC
CCACAGGTATGGAAACTGAGCAAACGCCTTCGCTTCCTTTGCATGGTCTC
TTTGGCCCTCGGGCTTTTTTCCACCCTCCAGCTCAAAACGGTCTTCACCC
TTCTCCTCGTGCCCTTTTTGGGATGGTACTCCTCCCGGGTCTACTCCCTC
CTCACCGCCGTCGGCTTCTGCCTCTTCCAGTGCCTCCCCATTGCCCTTCG
TCTTGATGCCCTCTTTACCGGACGGGTAACAGAATCCAGTATCAAGGTAC
AGCCCACCTTTCCCTCCCTCCCTCCCTTCCCCGGGCCCTCTCCGGCGTCT
GGATTCTTCACTACTGCTCCTCCCTCCGCCGCCTCCTCCTCCTCGTCCTC
CTCCTTCTCTCACACTTCCTCCTTCCCTTCCTCCCTCAGGTCCTCTACAG
CCTCTGCATCCTTCTTGAATGTTTCCTTGTCCGCTTGGCGTTCCTCTTTG
TCCTCCAGCTACGGCAGTGTCGCCCTGTCGGTACGTTGCCCTCCTTCCCT
CCCTCCCTCTTTCCTTCCCTTAGCGCTCGATATCTCGCGCGCGTTGTCGA
TTCCTCTCAATCCTCCCATCCTCCCCTTCCTCCCTCCCTCCCTCCTCCTC
CATAATACTTTCGTTCCGCCAAAC
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Coding sequence (CDS) from alignment at scaffold_33:47199..48322-

>mRNA_9231 ID=mRNA_9231|Name=jgi.p|Nanoce1779_2|605751|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_33:47199..48322- (Nannochloropsis oceanica)
GTCCTCTACAGCCTCTGCATCCTTCTTGAATGTTTCCTTGTCCGCTTGGC
GTTCCTCTTTGTCCTCCAGCTACGGCAGTGTCGCCCTGTCGGTACGTTGC
CCTCCTTCCCTCCCTCCCTCTTTCCTTCCCTTAGCGCTCGATATCTCGCG
CGCGTTGTCGATTCCTCTCAATCCTCCCATCCTCCCCTTCCTCCCTCCCT
CCCTCCTCCTCCATAAGTATGGAAACTGAGCAAACGCCTTCGCTTCCTTT
GCATGGTCTCTTTGGCCCTCGGGCTTTTTTCCACCCTCCAGCTCAAAACG
GTCTTCACCCTTCTCCTCGTGCCCTTTTTGGGATGGTACTCCTCCCGGGT
CTACTCCCTCCTCACCGCCGTCGGCTTCTGCCTCTTCCAGTGCCTCCCCA
TTGCCCTTCGTCTTGATGCCCTCTTTACCGGACGGGTAACAGAATCCAGT
ATCAAGATGGCCTTGTCGTCGGATCAGATTCGCTTGTACCACGTCCTCTA
CAGCCTCTGCATCCTTCTTGAATGTTTCCTTGTCCGCTTGGCGTTCCTCT
TTGTCCTCCAGCTACGGCAGTGTCGCCCTGTCGGTACGTTGCCCTCCTTC
CCTCCCTCCCTCTTTCCTTCCCTTAGCGCTCGATATCTCGCGCGCGTTGT
CGATTCCTCTCAATCCTCCCATCCTCCCCTTCCTCCCTCCCTCCCTCCTC
CTCCATAAGTATGGAAACTGAGCAAACGCCTTCGCTTCCTTTGCATGGTC
TCTTTGGCCCTCGGGCTTTTTTCCACCCTCCAGCTCAAAACGGTCTTCAC
CCTTCTCCTCGTGCCCTTTTTGGGATGGTACTCCTCCCGGGTCTACTCCC
TCCTCACCGCCGTCGGCTTCTGCCTCTTCCAGTGCCTCCCCATTGCCCTT
CGTCTTGATGCCCTCTTTACCGGACGGGTAACAGAATCCAGTATCAAGAT
GGCCTTGTCGTCGGATCAGATTCGCTTGTACCACGTCCTCTACAGCCTCT
GCATCCTTCTTGAATGTTTCCTTGTCCGCTTGGCGTTCCTCTTTGTCCTC
CAGCTACGGCAGTGTCGCCCTGTCGGTACGTTGCCCTCCTTCCCTCCCTC
CCTCTTTCCTTCCCTTAGCGCTCGATATCTCGCGCGCGTTGTCGATTCCT
CTCAATCCTCCCATCCTCCCCTTCCTCCCTCCCTCCCTCCTCCTCCATAA
GTATGGAAACTGAGCAAACGCCTTCGCTTCCTTTGCATGGTCTCTTTGGC
CCTCGGGCTTTTTTCCACCCTCCAGCTCAAAACGGTCTTCACCCTTCTCC
TCGTGCCCTTTTTGGGATGGTACTCCTCCCGGGTCTACTCCCTCCTCACC
GCCGTCGGCTTCTGCCTCTTCCAGTGCCTCCCCATTGCCCTTCGTCTTGA
TGCCCTCTTTACCGGACGGGTAACAGAATCCAGTATCAAGATGGCCTTGT
CGTCGGATCAGATTCGCTTGTACCAC
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Synonyms
Publications