jgi.p|Nanoce1779_2|605733, mRNA_9228 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605733
Unique NamemRNA_9228
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length868
Alignment locationscaffold_33:40413..41826 -

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Properties
Property NameValue
TranscriptId605819
TrackFilteredModels2
ProteinId605733
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:40413..41826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605733gene_9228Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605733mRNA_9228-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9228CDS_9228Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9228 ID=mRNA_9228|Name=jgi.p|Nanoce1779_2|605733|organism=Nannochloropsis oceanica|type=mRNA|length=868bp
ACAGTCACACCTTCCTCCTCTTCACTTAACCATGCGTGTCCTTGCTTTCT
TCGCCCTCCTGGCCGCACCCGCCCTGGCCTTCGTGCCCCGTATGCCCGCC
CCCGTGCGTGCCCGCGCCAGTCTCACCCTCCGATTCTCTGGAGAGTACAG
CGAGAAGGTGCGCGCCATCGTGTTGGAGAACATGGGCGATGATGCCAAGG
TGCAGGACTACCTGAAGGCCAACGGTGATGATAAGGCCGAGTTCGCCGCC
ATGGGCTTTGATTCTTTGGACTTGGTGGAGTTCTCCATGGCCATCCAGAA
GGAGTTCGACCTCCCGGACCTGAACGAGGAGGACTTCGCCAACCTCAAGA
CGATCAAGGACGTGGTCACTATGGTGGAGGCCAACAAGAAGTAAACACAC
AACGGCAGCGACAGCAGCAGCACCAGCAGCATGCACGAGGGGAGGAGGAA
GATGACTCGGTTGTTGGTTGGTGTGTTGACGTATTGTGATATGTGTGCAT
TCTCACCCTAATTGGTCTTCACATCTCCTCTCGTCTCCCTTTCCTGGGAA
GGGATGGCGGGAAGGAAAGAGGGAGGGAGTGCTTGTGTGTGCTATGTTGT
GTTTCGTGTGGCATGACTGGAGGTGGGCGATTAACAGCAAGAGGAGAAAT
TGGGCTGAATGAACGCTTAAGTCGTGTCTGTGTTTGTGACGATGAGTGGG
GAGGACGTAGCCTCATCCCCCTTTTCTTCCCGGTCGGTCTTTTTCGGCCT
TTTCCTCCTTCCCCTCCAAGGGTGGAAGGAGGAGGATGGACAGGGCGAGA
GACAAGAGAAGGATGGGGCTAGAGAATCCACACACAACTAGAGATAGAAG
TACTTTATCCTTGTTCTC
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protein sequence of jgi.p|Nanoce1779_2|605733

>mRNA_9228-protein ID=mRNA_9228-protein|Name=jgi.p|Nanoce1779_2|605733|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MRVLAFFALLAAPALAFVPRMPAPVRARASLTLRFSGEYSEKVRAIVLEN
MGDDAKVQDYLKANGDDKAEFAAMGFDSLDLVEFSMAIQKEFDLPDLNEE
DFANLKTIKDVVTMVEANKK*
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mRNA from alignment at scaffold_33:40413..41826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9228 ID=mRNA_9228|Name=jgi.p|Nanoce1779_2|605733|organism=Nannochloropsis oceanica|type=mRNA|length=1414bp|location=Sequence derived from alignment at scaffold_33:40413..41826- (Nannochloropsis oceanica)
ACAGTCACACCTTCCTCCTCTTCACTTAACCATGCGTGTCCTTGCTTTCT
TCGCCCTCCTGGCCGCACCCGCCCTGGCCTTCGTGCCCCGTATGCCCGCC
CCCGTGCGTGCCCGCGCCAGTCTCACCCTCCGATTCTCTGGAGAGTACAG
CGAGAAGGTAAGCCACCTCTCTTTCCTTCATGTCCTATCTTGCGCCCTCC
TTCCCCATGCTTCTTCCCCGATATTTTGTGGTCAGTTCTTGGTGTGTCAC
CTTGGGGTGGGCGGGTGAACCGCAGCGATTTCTCTTTCAGGGATGTGGGG
GCTGGATGCCCGTCTTGGCTACCTTTCCCTTCCCTCCCTGGTCCCGTCCC
TTCTCCTCCCTTTTCACTTCTCTCTCTTTTTTTTCTTCCTCTCCCCCTCC
TCGAACTTCCCCTGGCCGAAAGTGATCCATGTCCCACTTTCACTTACCCG
CCCTCCCTCCCTCCCTCCCCCTCTCCCTCCAGGTGCGCGCCATCGTGTTG
GAGAACATGGGCGATGATGCCAAGGTGCAGGACTACCTGAAGGCCAACGG
TGATGATAAGGCCGAGTTCGCCGCCATGGGCTTTGATTCTTTGGACTTGG
TGGAGTTCTCCATGGCCATCCAGAAGGTACGGGAACCTGCCTTCCTTCTC
TCCCTCCCTCCCAACCTACTTCCCTTCCATCACGGCGCCGAGCTCTCTGT
CTCCGATCTCATGGGTATATCGTTGTGTCTGCCTCGTCGAGCCCGTAGTT
TAGACATCGATATCATTCTCATGCACTCCATCAAATGAAAATTAATATTA
ATTTTCCACTCACATACTCTCCCCTCCCTTCCTTCCTCTCTTCTCAGGAG
TTCGACCTCCCGGACCTGAACGAGGAGGACTTCGCCAACCTCAAGACGAT
CAAGGACGTGGTCACTATGGTGGAGGCCAACAAGAAGTAAACACACAACG
GCAGCGACAGCAGCAGCACCAGCAGCATGCACGAGGGGAGGAGGAAGATG
ACTCGGTTGTTGGTTGGTGTGTTGACGTATTGTGATATGTGTGCATTCTC
ACCCTAATTGGTCTTCACATCTCCTCTCGTCTCCCTTTCCTGGGAAGGGA
TGGCGGGAAGGAAAGAGGGAGGGAGTGCTTGTGTGTGCTATGTTGTGTTT
CGTGTGGCATGACTGGAGGTGGGCGATTAACAGCAAGAGGAGAAATTGGG
CTGAATGAACGCTTAAGTCGTGTCTGTGTTTGTGACGATGAGTGGGGAGG
ACGTAGCCTCATCCCCCTTTTCTTCCCGGTCGGTCTTTTTCGGCCTTTTC
CTCCTTCCCCTCCAAGGGTGGAAGGAGGAGGATGGACAGGGCGAGAGACA
AGAGAAGGATGGGGCTAGAGAATCCACACACAACTAGAGATAGAAGTACT
TTATCCTTGTTCTC
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Coding sequence (CDS) from alignment at scaffold_33:40413..41826-

>mRNA_9228 ID=mRNA_9228|Name=jgi.p|Nanoce1779_2|605733|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_33:40413..41826- (Nannochloropsis oceanica)
GAGTTCGACCTCCCGGACCTGAACGAGGAGGACTTCGCCAACCTCAAGAC
GATCAAGGACGTGGTCACTATGGTGGAGGCCAACAAGAAGTAAGTGCGCG
CCATCGTGTTGGAGAACATGGGCGATGATGCCAAGGTGCAGGACTACCTG
AAGGCCAACGGTGATGATAAGGCCGAGTTCGCCGCCATGGGCTTTGATTC
TTTGGACTTGGTGGAGTTCTCCATGGCCATCCAGAAGATGCGTGTCCTTG
CTTTCTTCGCCCTCCTGGCCGCACCCGCCCTGGCCTTCGTGCCCCGTATG
CCCGCCCCCGTGCGTGCCCGCGCCAGTCTCACCCTCCGATTCTCTGGAGA
GTACAGCGAGAAGGAGTTCGACCTCCCGGACCTGAACGAGGAGGACTTCG
CCAACCTCAAGACGATCAAGGACGTGGTCACTATGGTGGAGGCCAACAAG
AAGTAAGTGCGCGCCATCGTGTTGGAGAACATGGGCGATGATGCCAAGGT
GCAGGACTACCTGAAGGCCAACGGTGATGATAAGGCCGAGTTCGCCGCCA
TGGGCTTTGATTCTTTGGACTTGGTGGAGTTCTCCATGGCCATCCAGAAG
ATGCGTGTCCTTGCTTTCTTCGCCCTCCTGGCCGCACCCGCCCTGGCCTT
CGTGCCCCGTATGCCCGCCCCCGTGCGTGCCCGCGCCAGTCTCACCCTCC
GATTCTCTGGAGAGTACAGCGAGAAGGAGTTCGACCTCCCGGACCTGAAC
GAGGAGGACTTCGCCAACCTCAAGACGATCAAGGACGTGGTCACTATGGT
GGAGGCCAACAAGAAGTAAGTGCGCGCCATCGTGTTGGAGAACATGGGCG
ATGATGCCAAGGTGCAGGACTACCTGAAGGCCAACGGTGATGATAAGGCC
GAGTTCGCCGCCATGGGCTTTGATTCTTTGGACTTGGTGGAGTTCTCCAT
GGCCATCCAGAAGATGCGTGTCCTTGCTTTCTTCGCCCTCCTGGCCGCAC
CCGCCCTGGCCTTCGTGCCCCGTATGCCCGCCCCCGTGCGTGCCCGCGCC
AGTCTCACCCTCCGATTCTCTGGAGAGTACAGCGAGAAG
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Synonyms
Publications