jgi.p|Nanoce1779_2|605731, mRNA_9226 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605731
Unique NamemRNA_9226
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length558
Alignment locationscaffold_33:37719..38928 +

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Properties
Property NameValue
TranscriptId605817
TrackFilteredModels2
ProteinId605731
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:37719..38928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605731gene_9226Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605731mRNA_9226-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9226CDS_9226Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9226 ID=mRNA_9226|Name=jgi.p|Nanoce1779_2|605731|organism=Nannochloropsis oceanica|type=mRNA|length=558bp
CCTCACCGAGACCCTCACGTTCTGGCCGGCGTCATTAAGATTGTCATTCA
CAAACGTCCTCCACTTCTCAAGGGCGGCTTCACGGGACATAGTCCGAAGG
GGAGGGGTTGCTGGTTTTTTCTTGTTGGGAGGGATGCTAACCGTTGCAAA
ACGGCTCGCGGCGGTGTGTCGGAGCAAGCATCGCCTGTCGCTTGTTGATC
CTCCCTGGCCTAGGCTTTTGCTGATACTGCTGCTGTATGTATTGAACTGC
TGCCGCTGCCGCTGGGTAATGCTGAGAAAGGTTGACGAGACAGGAAGGGA
AGGGCAGGCGACGGGGTACGGAGGAATGAAGGCATCAACGACGATGTGGG
CCAGCACAAGGCAATGGAAAAAAAGACGGATGAGAGACCTGCCATGCACA
CTGCGGGGACTTGAGGGCAAATATCTTTTTCGATGGAGTGGTCGTGGGCC
TCTGATTCTGACACTGCTGTCCATGCTCCTGCTCCTGCAGCTGCCGCTGC
GTGTCATGACGAGCGGCCTAGTCCCGGCCGCGTGGAATGTGGTGCGTTGG
ATGTTCTG
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protein sequence of jgi.p|Nanoce1779_2|605731

>mRNA_9226-protein ID=mRNA_9226-protein|Name=jgi.p|Nanoce1779_2|605731|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MLTVAKRLAAVCRSKHRLSLVDPPWPRLLLILLLYVLNCCRCRWVMLRKV
DETGREGQATGYGGMKASTTMWASTRQWKKRRMRDLPCTLRGLEGKYLFR
WSGRGPLILTLLSMLLLLQLPLRVMTSGLVPAAWNVVRWMF
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mRNA from alignment at scaffold_33:37719..38928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9226 ID=mRNA_9226|Name=jgi.p|Nanoce1779_2|605731|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp|location=Sequence derived from alignment at scaffold_33:37719..38928+ (Nannochloropsis oceanica)
CCTCACCGAGACCCTCACGTTCTGGCCGGCGTCATTAAGATTGTCATTCA CAAACGTCCTCCACTTCTCAAGGGCGGCTGCCAGAGAGGGAGGGAGGGAG GGAAGGAGGGAGGGAGGGAGGAGGAAGGAAAAATTAACTTTTGTGTACTC TAAAGGATATTAGAATCGGGAAAAAAATGGAAAAAGAGGAGAAAGGAATG AAGAGGAGAGGGAGGGAGGATGGGAAAGAGGGAGCAGACGGACCTTCACG GGACATAGTCCGAAGGGGAGGGGTTGCTGGTTTTTTCTTGTTGGGAGGGA TGCTAACCGTTGCAAAACGGCTCGCGGCGGTGTGTCGGAGCAAGCATCGC CTGTCGCTGTTTGTGTTTTTGGTATGTGCGTACGATAGAGAGGGTAGTGG AAGGGAAGGAAGTTAAATTCGAAATGGAGAGCAGGACACACGTATTAACG GGGGGAAAATTGTTAATCTGCCGCGTGGGCCTGCGGGGGATAGCGGTGTC TAAGGCGAGGAGTGTTGAAGCATGTCTGAGTACGCTCCTTCTACTCCCAC TTCTCATTATACTGTTGCTGCGGTCGCTGCTTCGCACCGGTAAATTGTTT TTGTGTGATATTCAAAATATTAAAAAAAAAAAAAAAAAAAAAAGTGAAAA GAAGAGTAGGAATTTAGAGCGTGTGAAGGGGAAAAAATAGGAAATCTGGC TCGGATAGATGTGTACATATGTATGTTTATATGTGTATTAAATTTGTGAA AGAGGCGTAGAAAAGGATAGAGTGAAGGAGGAAGGGGGGAAGGAAGGAAC TGAGGAAAGGGGACGCAGTTGCATGGGCCCGCGGCTGATTACCTTGTTGA TCCTCCCTGGCCTAGGCTTTTGCTGATACTGCTGCTGTATGTATTGAACT GCTGCCGCTGCCGCTGGGTAATGCTGAGAAAGGTTGACGAGACAGGAAGG GAAGGGCAGGCGACGGGGTACGGAGGAATGAAGGCATCAACGACGATGTG GGCCAGCACAAGGCAATGGAAAAAAAGACGGATGAGAGACCTGCCATGCA CACTGCGGGGACTTGAGGGCAAATATCTTTTTCGATGGAGTGGTCGTGGG CCTCTGATTCTGACACTGCTGTCCATGCTCCTGCTCCTGCAGCTGCCGCT GCGTGTCATGACGAGCGGCCTAGTCCCGGCCGCGTGGAATGTGGTGCGTT GGATGTTCTG
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Coding sequence (CDS) from alignment at scaffold_33:37719..38928+

>mRNA_9226 ID=mRNA_9226|Name=jgi.p|Nanoce1779_2|605731|organism=Nannochloropsis oceanica|type=CDS|length=850bp|location=Sequence derived from alignment at scaffold_33:37719..38928+ (Nannochloropsis oceanica)
ATGCTAACCGTTGCAAAACGGCTCGCGGCGGTGTGTCGGAGCAAGCATCG
CCTGTCGCTTGTTGATCCTCCCTGGCCTAGGCTTTTGCTGATACTGCTGC
TGTATGTATTGAACTGCTGCCGCTGCCGCTGGGTAATGCTGAGAAAGGTT
GACGAGACAGGAAGGGAAGGGCAGGCGACGGGGTACGGAGGAATGAAGGC
ATCAACGACGATGTGGGCCAGCACAAGGCAATGGAAAAAAAGACGGATGA
GAGACCTGCCATGCACACTGCGGGGACTTGAGGGCAAATATCTTTTTCGA
TGGAGTGGTCGTGGGCCTCTGATTCTGACACTGCTGTCCATGCTCCTGCT
CCTGCAGCTGCCGCTGCGTGTCATGACGAGCGGCCTAGTCCCGGCCGCGT
GGAATGTGGTGCGTTGGATGTTCTGATGCTAACCGTTGCAAAACGGCTCG
CGGCGGTGTGTCGGAGCAAGCATCGCCTGTCGCTTGTTGATCCTCCCTGG
CCTAGGCTTTTGCTGATACTGCTGCTGTATGTATTGAACTGCTGCCGCTG
CCGCTGGGTAATGCTGAGAAAGGTTGACGAGACAGGAAGGGAAGGGCAGG
CGACGGGGTACGGAGGAATGAAGGCATCAACGACGATGTGGGCCAGCACA
AGGCAATGGAAAAAAAGACGGATGAGAGACCTGCCATGCACACTGCGGGG
ACTTGAGGGCAAATATCTTTTTCGATGGAGTGGTCGTGGGCCTCTGATTC
TGACACTGCTGTCCATGCTCCTGCTCCTGCAGCTGCCGCTGCGTGTCATG
ACGAGCGGCCTAGTCCCGGCCGCGTGGAATGTGGTGCGTTGGATGTTCTG
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Synonyms
Publications