jgi.p|Nanoce1779_2|264304, mRNA_9223 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|264304
Unique NamemRNA_9223
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1248
Alignment locationscaffold_33:30159..31406 -

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Properties
Property NameValue
TranscriptId264390
TrackFilteredModels2
ProteinId264304
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:30159..31406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|264304gene_9223Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|264304mRNA_9223-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9223CDS_9223Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9223 ID=mRNA_9223|Name=jgi.p|Nanoce1779_2|264304|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
TGAGGCGCTAAAACATACGCACTCACACAAGCATAGGATACGGTGCATTG
TATGCGCAGACAGCAAATTAAGGAGGGGATGAATAAGAGCATCACATTGG
CAATATACAGCAGCGTCGTGTTGCTGCAGCCACCGAAAAAGATGATAATG
AAGAGGAGATATGAGATTTAACCTCAGAAGTCCAGACCTACAGCATGAGA
ACCAATGATTTGCTGAGGTTAATCCCCTGTGCAAACCTCTTACCCATTTG
GCAGCGAACTTACAGATGGTGCCCACGACAGCCACATGCAACAATGTCGG
AGACGTGGACGTGATCTAGGAGGGGGGCATGCCCAAGTGAGTGAAGTCCA
AGGGCGTGGTGGGCCTGCCATGGGGCCAAGTGGGCGTGAGGCTACTAGAA
TACGACGAAATTCTTGACGCCTTGAGCATTAACATGGCTTTAGGGTTGGG
GAGACGAGCCTGGCTTCAGACGGCCACCATCGCAAGAACATCAGTGCGGG
GACCACCTCTGGACAGACCGAGCGCATGTAAGACCGATCCTCTGCCAGAT
ACCTGCAGTGGGCCATTGGATATCCTGGAAGGAGCATCAGACATCTCCTA
TGAGCATGTTGAGGAGCATTCCGAGGGTGGATCTCCATCTCTCCTCTTCT
CTCACTCCTCCCCCTTTCCCTTCTTCCCCTCTCTCTCCTTCGTCTTCGCT
CCGTATTTCTTCCTCCCTCCCTTTCACTTTTCCGCTCTGTCTCTCCTACT
CTCTCTTTCCTTTCTCTCTTATCATTTTCTGCCTTCCGTCAACTCCCTCT
ATTCCATCCTGCCTCTCCTCTTCCTATCTCTTTTCTCATTCTCTTCTTTA
TTTTATTCCAAAATTCAACAGAAAAATCGTCCCGTCTCTCTCTCACTGCT
CTGCCCCCCCTTTGCCTTCTTTTTATCCTCTCAGTTTCCTTTTTTGTCCT
CTATTTCCCTTTTTTTACCCTCCCCTCGTCCTCTCCATCCATCCTCCCCC
TCTTCCTCTTTCCCATCTGTCTTGTTGATGGAGGTTTTTAAAAACCCTCA
TTCTGAGCCATGAAGTATCACTTCTAAAGCGCCTGCGTCTACCACTTGAG
CAAGAGGAGTGCGAGCTTAGCTGTACGATTCCAGTAAATAAAATCCAACG
GGACTCACGGTGCCTTAAAGTCAGTGCTCTTTTTCCCTGCTACTTCAAAG
TCCCCGTCACGTCAATGGCCTGCTCTGGGTGCGGGCTCGACTCGTTAA
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protein sequence of jgi.p|Nanoce1779_2|264304

>mRNA_9223-protein ID=mRNA_9223-protein|Name=jgi.p|Nanoce1779_2|264304|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MALGLGRRAWLQTATIARTSVRGPPLDRPSACKTDPLPDTCSGPLDILEG
ASDISYEHVEEHSEGGSPSLLFSHSSPFPFFPSLSFVFAPYFFLPPFHFS
ALSLLLSLSFLSYHFLPSVNSLYSILPLLFLSLFSFSSLFYSKIQQKNRP
VSLSLLCPPFAFFLSSQFPFLSSISLFLPSPRPLHPSSPSSSFPSVLLME
VFKNPHSEP*
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mRNA from alignment at scaffold_33:30159..31406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9223 ID=mRNA_9223|Name=jgi.p|Nanoce1779_2|264304|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp|location=Sequence derived from alignment at scaffold_33:30159..31406- (Nannochloropsis oceanica)
TGAGGCGCTAAAACATACGCACTCACACAAGCATAGGATACGGTGCATTG
TATGCGCAGACAGCAAATTAAGGAGGGGATGAATAAGAGCATCACATTGG
CAATATACAGCAGCGTCGTGTTGCTGCAGCCACCGAAAAAGATGATAATG
AAGAGGAGATATGAGATTTAACCTCAGAAGTCCAGACCTACAGCATGAGA
ACCAATGATTTGCTGAGGTTAATCCCCTGTGCAAACCTCTTACCCATTTG
GCAGCGAACTTACAGATGGTGCCCACGACAGCCACATGCAACAATGTCGG
AGACGTGGACGTGATCTAGGAGGGGGGCATGCCCAAGTGAGTGAAGTCCA
AGGGCGTGGTGGGCCTGCCATGGGGCCAAGTGGGCGTGAGGCTACTAGAA
TACGACGAAATTCTTGACGCCTTGAGCATTAACATGGCTTTAGGGTTGGG
GAGACGAGCCTGGCTTCAGACGGCCACCATCGCAAGAACATCAGTGCGGG
GACCACCTCTGGACAGACCGAGCGCATGTAAGACCGATCCTCTGCCAGAT
ACCTGCAGTGGGCCATTGGATATCCTGGAAGGAGCATCAGACATCTCCTA
TGAGCATGTTGAGGAGCATTCCGAGGGTGGATCTCCATCTCTCCTCTTCT
CTCACTCCTCCCCCTTTCCCTTCTTCCCCTCTCTCTCCTTCGTCTTCGCT
CCGTATTTCTTCCTCCCTCCCTTTCACTTTTCCGCTCTGTCTCTCCTACT
CTCTCTTTCCTTTCTCTCTTATCATTTTCTGCCTTCCGTCAACTCCCTCT
ATTCCATCCTGCCTCTCCTCTTCCTATCTCTTTTCTCATTCTCTTCTTTA
TTTTATTCCAAAATTCAACAGAAAAATCGTCCCGTCTCTCTCTCACTGCT
CTGCCCCCCCTTTGCCTTCTTTTTATCCTCTCAGTTTCCTTTTTTGTCCT
CTATTTCCCTTTTTTTACCCTCCCCTCGTCCTCTCCATCCATCCTCCCCC
TCTTCCTCTTTCCCATCTGTCTTGTTGATGGAGGTTTTTAAAAACCCTCA
TTCTGAGCCATGAAGTATCACTTCTAAAGCGCCTGCGTCTACCACTTGAG
CAAGAGGAGTGCGAGCTTAGCTGTACGATTCCAGTAAATAAAATCCAACG
GGACTCACGGTGCCTTAAAGTCAGTGCTCTTTTTCCCTGCTACTTCAAAG
TCCCCGTCACGTCAATGGCCTGCTCTGGGTGCGGGCTCGACTCGTTAA
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Coding sequence (CDS) from alignment at scaffold_33:30159..31406-

>mRNA_9223 ID=mRNA_9223|Name=jgi.p|Nanoce1779_2|264304|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_33:30159..31406- (Nannochloropsis oceanica)
ATGGCTTTAGGGTTGGGGAGACGAGCCTGGCTTCAGACGGCCACCATCGC
AAGAACATCAGTGCGGGGACCACCTCTGGACAGACCGAGCGCATGTAAGA
CCGATCCTCTGCCAGATACCTGCAGTGGGCCATTGGATATCCTGGAAGGA
GCATCAGACATCTCCTATGAGCATGTTGAGGAGCATTCCGAGGGTGGATC
TCCATCTCTCCTCTTCTCTCACTCCTCCCCCTTTCCCTTCTTCCCCTCTC
TCTCCTTCGTCTTCGCTCCGTATTTCTTCCTCCCTCCCTTTCACTTTTCC
GCTCTGTCTCTCCTACTCTCTCTTTCCTTTCTCTCTTATCATTTTCTGCC
TTCCGTCAACTCCCTCTATTCCATCCTGCCTCTCCTCTTCCTATCTCTTT
TCTCATTCTCTTCTTTATTTTATTCCAAAATTCAACAGAAAAATCGTCCC
GTCTCTCTCTCACTGCTCTGCCCCCCCTTTGCCTTCTTTTTATCCTCTCA
GTTTCCTTTTTTGTCCTCTATTTCCCTTTTTTTACCCTCCCCTCGTCCTC
TCCATCCATCCTCCCCCTCTTCCTCTTTCCCATCTGTCTTGTTGATGGAG
GTTTTTAAAAACCCTCATTCTGAGCCATGA
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Synonyms
Publications