jgi.p|Nanoce1779_2|264235, mRNA_9221 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|264235
Unique NamemRNA_9221
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1233
Alignment locationscaffold_33:26308..28141 -

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Properties
Property NameValue
TranscriptId264321
TrackFilteredModels2
ProteinId264235
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:26308..28141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|264235gene_9221Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|264235mRNA_9221-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9221CDS_9221Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9221 ID=mRNA_9221|Name=jgi.p|Nanoce1779_2|264235|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp
CACCTCTCTTGCGTCGCCTCGCCCATCTCCCTACATCACCGTTCCCTTCC
TCTCTCCCTCTCCCTTTCCCTCGCTTCTTGCACACAGCGCAGCGTCATGG
CGTCCACGGGAAGTAATGCATCCTTTTTCACCCGGCGTCTTACGCCCAGT
GTCCTACCCAAGTCACTCGGAGGAGCGGGAGAGGGTCCAGCGAGACAACC
TGGTTTCTCCCGGTCACCGGCAGGCCACAGTCAGGCGCAGGCGAGCTGTG
CAACGGTGCTGTATCGCGAACAGCGCGCCGCCATGCTCCAAGAAAAAGCC
TCCTCCTCTCCCCCCTCCTCCTCTTCCTCCTTCCGTCCTTCCGTTTCTTT
CTCTTCTTCCTCCTCATCCTCCCTCCCCAACAACCACATTCACACTCCTT
CTACCCTTCCGCCCTCTTCACCGCCCATGGCACCCTTGGCTGTCGCTGCT
GCTGCCATCGCCCACACCCACTCCCGCTCCGCTGCCGATCTCCACCGGGA
ACGTCGACAAGCCCTGAAGGACAGTGGAGTGCCCCTCCACGCCGTCACCC
CTGCTTTGCTCCTCTCCTCGGCCGCCGCGGGCAACAACCGCGTGCCGACC
AGGCAAGGGAGGGAGGGAGGGAGGGCGGGCCTGAAGGTATTGATGGGAGG
AGCAGTGCTGGTGGGGGCGGCTGGAGTGGTGTACATGGGAGGGGTCGAAG
AAGCAGCGGCTGCAGCAACAGCAACGGGGGTAGTGTTCCCCTTCTGGTCT
TCGTCCTCCTCCTCCTCTTCAGCCGGGGCCTCGACCTCCCTCCCTCCCTC
CTCCTCCTCCTCCTCCCCTTTGGGCGTACCTGCGTTTGACTCTTCCTTGT
CGTCGTCCCAGCCCGTGTGGCTGCAACGGCCGCGGGGGTCTTGAGAGGTG
GTGGAGGAAAGGAGAGACACGCCTAGACTTGAGGGGAAAAAGTTAAGAAA
GGGATCCCAAAAAAAGTGTGTGTTAGAGAGACATAACAAGGAAGAGAGAG
AGAGAGAGGAACCGAGACAGAGAGAAAATGTAGACGAGCAGGAGACAAAA
GGAATGATGATGTTGAAAACAAAGTCTCAAGAGAAGTTTCACCTAACACA
ACCCCCCTTTTGAAACATGAAGGAGCGAAACGCAAAGCAAAGACGAAAAG
AAAGTGGGAGGAGGAAAGAGAAGAGGAAGAAACAGAAAAAGGAATCAAAC
GGAGAAATTTGAAACGGGCGAAACCGACGGTGG
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protein sequence of jgi.p|Nanoce1779_2|264235

>mRNA_9221-protein ID=mRNA_9221-protein|Name=jgi.p|Nanoce1779_2|264235|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MASTGSNASFFTRRLTPSVLPKSLGGAGEGPARQPGFSRSPAGHSQAQAS
CATVLYREQRAAMLQEKASSSPPSSSSSFRPSVSFSSSSSSSLPNNHIHT
PSTLPPSSPPMAPLAVAAAAIAHTHSRSAADLHRERRQALKDSGVPLHAV
TPALLLSSAAAGNNRVPTRQGREGGRAGLKVLMGGAVLVGAAGVVYMGGV
EEAAAAATATGVVFPFWSSSSSSSSAGASTSLPPSSSSSSPLGVPAFDSS
LSSSQPVWLQRPRGS*
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mRNA from alignment at scaffold_33:26308..28141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9221 ID=mRNA_9221|Name=jgi.p|Nanoce1779_2|264235|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp|location=Sequence derived from alignment at scaffold_33:26308..28141- (Nannochloropsis oceanica)
CACCTCTCTTGCGTCGCCTCGCCCATCTCCCTACATCACCGTTCCCTTCC
TCTCTCCCTCTCCCTTTCCCTCGCTTCTTGCACACAGCGCAGCGTCATGG
CGTCCACGGGAAGTAATGCATCCTTTTTCACCCGGCGTCTTACGCCCAGT
GTCCTACCCAAGTCACTCGGAGGAGCGGGAGAGGGTCCAGCGAGACAACC
TGGTTTCTCCCGGTCACCGGCAGGCCACAGTCAGGCGCAGGCGAGCTGTG
CAACGGTGCTGTATCGCGAACAGGTAAAATCAAAAGGGCAAGAAGGCAGG
AGAGGGATGAGGGAGTTTTTATTCCAGTCCCTCAGACAAAATAAATCGTG
GTCAATTCCCATGCATCCTATTCATTGCCCCCTCCCTCCCTCCCTGCCTC
CCTCCCTCCTCCCATCCTCTCAACAGCGCGCCGCCATGCTCCAAGAAAAA
GCCTCCTCCTCTCCCCCCTCCTCCTCTTCCTCCTTCCGTCCTTCCGTTTC
TTTCTCTTCTTCCTCCTCATCCTCCCTCCCCAACAACCACATTCACACTC
CTTCTACCCTTCCGCCCTCTTCACCGCCCATGGCACCCTTGGCTGTCGCT
GCTGCTGCCATCGCCCACACCCACTCCCGCTCCGCTGCCGATCTCCACCG
GGAACGTCGACAAGCCCTGAAGGACAGTGGAGTGCCCCTCCACGCCGTCA
CCCCTGCTTTGCTCCTCTCCTCGGCCGCCGCGGGCAACAACCGCGTGCCG
ACCAGGCAAGGGAGGGAGGGAGGGAGGGCGGGCCTGAAGGTATTGATGGG
AGGAGCAGTGCTGGTGGGGGCGGCTGGAGTGGTGTACATGGGAGGGGTCG
AAGAAGCAGCGGCTGCAGCAACAGCAACGGGGGTAGTGTTCCCCTTCTGG
TCTTCGTCCTCCTCCTCCTCTTCAGCCGGGGCCTCGACCTCCCTCCCTCC
CTCCTCCTCCTCCTCCTCCCCTTTGGGCGTACCTGCGTTTGACTCTTCCT
TGTCGTCGTCCCAGCCCGTGTGGCTGCAACGGCCGCGGGGGTCTTGAGCT
GGAGGGAGGGAGGGAGGGAGGGATGGAAGGGAGGGAGGGAGGCGAGACGT
ATGTAAAGGCGAGCAAACGGACGGCAGGGGAGGTGAAAGGGAAGAGGGAG
GAAGAGAGAGAGGAAAGAGAGGAGGAAACCTAGCATGCTTCTCTTCAGAA
TAGAGAAATTTGGGGGGAGAAGTAAGAATGAAAAGGGACTTGGGCGTTGA
AAAACAGGGACGATGAAGGGATGAGGAAGGAGAGGGGGAGGTGAGGGGGA
TGGAGGGAAAGGGGGAGGAAAGGAAGTTGATTGAATGTACGTGTGTAAGA
GAGAGAGTGTGTGTGTGTGTCTATAATTCGCGATGACACCGACTGCAAGA
AGGGCTTGGACAGTAGCTGCACCAGCAGCCGCACCATCAACAGCAGCAGC
AGGTGCTGGTGGCTTGTGGCGGTGAAGGATGAGGAAGAGGGGGAGGAGGT
GGTGGAGGAAAGGAGAGACACGCCTAGACTTGAGGGGAAAAAGTTAAGAA
AGGGATCCCAAAAAAAGTGTGTGTTAGAGAGACATAACAAGGAAGAGAGA
GAGAGAGAGGAACCGAGACAGAGAGAAAATGTAGACGAGCAGGAGACAAA
AGGAATGATGATGTTGAAAACAAAGTCTCAAGAGAAGTTTCACCTAACAC
AACCCCCCTTTTGAAACATGAAGGAGCGAAACGCAAAGCAAAGACGAAAA
GAAAGTGGGAGGAGGAAAGAGAAGAGGAAGAAACAGAAAAAGGAATCAAA
CGGAGAAATTTGAAACGGGCGAAACCGACGGTGG
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Coding sequence (CDS) from alignment at scaffold_33:26308..28141-

>mRNA_9221 ID=mRNA_9221|Name=jgi.p|Nanoce1779_2|264235|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_33:26308..28141- (Nannochloropsis oceanica)
CGCGCCGCCATGCTCCAAGAAAAAGCCTCCTCCTCTCCCCCCTCCTCCTC
TTCCTCCTTCCGTCCTTCCGTTTCTTTCTCTTCTTCCTCCTCATCCTCCC
TCCCCAACAACCACATTCACACTCCTTCTACCCTTCCGCCCTCTTCACCG
CCCATGGCACCCTTGGCTGTCGCTGCTGCTGCCATCGCCCACACCCACTC
CCGCTCCGCTGCCGATCTCCACCGGGAACGTCGACAAGCCCTGAAGGACA
GTGGAGTGCCCCTCCACGCCGTCACCCCTGCTTTGCTCCTCTCCTCGGCC
GCCGCGGGCAACAACCGCGTGCCGACCAGGCAAGGGAGGGAGGGAGGGAG
GGCGGGCCTGAAGGTATTGATGGGAGGAGCAGTGCTGGTGGGGGCGGCTG
GAGTGGTGTACATGGGAGGGGTCGAAGAAGCAGCGGCTGCAGCAACAGCA
ACGGGGGTAGTGTTCCCCTTCTGGTCTTCGTCCTCCTCCTCCTCTTCAGC
CGGGGCCTCGACCTCCCTCCCTCCCTCCTCCTCCTCCTCCTCCCCTTTGG
GCGTACCTGCGTTTGACTCTTCCTTGTCGTCGTCCCAGCCCGTGTGGCTG
CAACGGCCGCGGGGGTCTTGAATGGCGTCCACGGGAAGTAATGCATCCTT
TTTCACCCGGCGTCTTACGCCCAGTGTCCTACCCAAGTCACTCGGAGGAG
CGGGAGAGGGTCCAGCGAGACAACCTGGTTTCTCCCGGTCACCGGCAGGC
CACAGTCAGGCGCAGGCGAGCTGTGCAACGGTGCTGTATCGCGAACAGCG
CGCCGCCATGCTCCAAGAAAAAGCCTCCTCCTCTCCCCCCTCCTCCTCTT
CCTCCTTCCGTCCTTCCGTTTCTTTCTCTTCTTCCTCCTCATCCTCCCTC
CCCAACAACCACATTCACACTCCTTCTACCCTTCCGCCCTCTTCACCGCC
CATGGCACCCTTGGCTGTCGCTGCTGCTGCCATCGCCCACACCCACTCCC
GCTCCGCTGCCGATCTCCACCGGGAACGTCGACAAGCCCTGAAGGACAGT
GGAGTGCCCCTCCACGCCGTCACCCCTGCTTTGCTCCTCTCCTCGGCCGC
CGCGGGCAACAACCGCGTGCCGACCAGGCAAGGGAGGGAGGGAGGGAGGG
CGGGCCTGAAGGTATTGATGGGAGGAGCAGTGCTGGTGGGGGCGGCTGGA
GTGGTGTACATGGGAGGGGTCGAAGAAGCAGCGGCTGCAGCAACAGCAAC
GGGGGTAGTGTTCCCCTTCTGGTCTTCGTCCTCCTCCTCCTCTTCAGCCG
GGGCCTCGACCTCCCTCCCTCCCTCCTCCTCCTCCTCCTCCCCTTTGGGC
GTACCTGCGTTTGACTCTTCCTTGTCGTCGTCCCAGCCCGTGTGGCTGCA
ACGGCCGCGGGGGTCTTGAATGGCGTCCACGGGAAGTAATGCATCCTTTT
TCACCCGGCGTCTTACGCCCAGTGTCCTACCCAAGTCACTCGGAGGAGCG
GGAGAGGGTCCAGCGAGACAACCTGGTTTCTCCCGGTCACCGGCAGGCCA
CAGTCAGGCGCAGGCGAGCTGTGCAACGGTGCTGTATCGCGAACAG
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Synonyms
Publications