jgi.p|Nanoce1779_2|605710, mRNA_9220 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605710
Unique NamemRNA_9220
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length914
Alignment locationscaffold_33:26293..27206 +

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Properties
Property NameValue
TranscriptId605796
TrackFilteredModels2
ProteinId605710
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:26293..27206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605710gene_9220Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605710mRNA_9220-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9220CDS_9220Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9220 ID=mRNA_9220|Name=jgi.p|Nanoce1779_2|605710|organism=Nannochloropsis oceanica|type=mRNA|length=914bp
AGGTTTATTGGCGCGCCACCGTCGGTTTCGCCCGTTTCAAATTTCTCCGT
TTGATTCCTTTTTCTGTTTCTTCCTCTTCTCTTTCCTCCTCCCACTTTCT
TTTCGTCTTTGCTTTGCGTTTCGCTCCTTCATGTTTCAAAAGGGGGGTTG
TGTTAGGTGAAACTTCTCTTGAGACTTTGTTTTCAACATCATCATTCCTT
TTGTCTCCTGCTCGTCTACATTTTCTCTCTGTCTCGGTTCCTCTCTCTCT
CTCTCTTCCTTGTTATGTCTCTCTAACACACACTTTTTTTGGGATCCCTT
TCTTAACTTTTTCCCCTCAAGTCTAGGCGTGTCTCTCCTTTCCTCCACCA
CCTCCTCCCCCTCTTCCTCATCCTTCACCGCCACAAGCCACCAGCACCTG
CTGCTGCTGTTGATGGTGCGGCTGCTGGTGCAGCTACTGTCCAAGCCCTT
CTTGCAGTCGGTGTCATCGCGAATTATAGACACACACACACACTCTCTCT
CTTACACACGTACATTCAATCAACTTCCTTTCCTCCCCCTTTCCCTCCAT
CCCCCTCACCTCCCCCTCTCCTTCCTCATCCCTTCATCGTCCCTGTTTTT
CAACGCCCAAGTCCCTTTTCATTCTTACTTCTCCCCCCAAATTTCTCTAT
TCTGAAGAGAAGCATGCTAGGTTTCCTCCTCTCTTTCCTCTCTCTCTTCC
TCCCTCTTCCCTTTCACCTCCCCTGCCGTCCGTTTGCTCGCCTTTACATA
CGTCTCGCCTCCCTCCCTCCCTTCCATCCCTCCCTCCCTCCCTCCCTCCA
GCTCAAGACCCCCGCGGCCGTTGCAGCCACACGGGCTGGGACGACGACAA
GGAAGAGTCAAACGCAGGTACGCCCAAAGGGGAGGAGGAGGAGGAGGAGG
GAGGGAGGGAGGTC
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protein sequence of jgi.p|Nanoce1779_2|605710

>mRNA_9220-protein ID=mRNA_9220-protein|Name=jgi.p|Nanoce1779_2|605710|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MVRLLVQLLSKPFLQSVSSRIIDTHTHSLSYTRTFNQLPFLPLSLHPPHL
PLSFLIPSSSLFFNAQVPFHSYFSPQISLF*
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mRNA from alignment at scaffold_33:26293..27206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9220 ID=mRNA_9220|Name=jgi.p|Nanoce1779_2|605710|organism=Nannochloropsis oceanica|type=mRNA|length=914bp|location=Sequence derived from alignment at scaffold_33:26293..27206+ (Nannochloropsis oceanica)
AGGTTTATTGGCGCGCCACCGTCGGTTTCGCCCGTTTCAAATTTCTCCGT
TTGATTCCTTTTTCTGTTTCTTCCTCTTCTCTTTCCTCCTCCCACTTTCT
TTTCGTCTTTGCTTTGCGTTTCGCTCCTTCATGTTTCAAAAGGGGGGTTG
TGTTAGGTGAAACTTCTCTTGAGACTTTGTTTTCAACATCATCATTCCTT
TTGTCTCCTGCTCGTCTACATTTTCTCTCTGTCTCGGTTCCTCTCTCTCT
CTCTCTTCCTTGTTATGTCTCTCTAACACACACTTTTTTTGGGATCCCTT
TCTTAACTTTTTCCCCTCAAGTCTAGGCGTGTCTCTCCTTTCCTCCACCA
CCTCCTCCCCCTCTTCCTCATCCTTCACCGCCACAAGCCACCAGCACCTG
CTGCTGCTGTTGATGGTGCGGCTGCTGGTGCAGCTACTGTCCAAGCCCTT
CTTGCAGTCGGTGTCATCGCGAATTATAGACACACACACACACTCTCTCT
CTTACACACGTACATTCAATCAACTTCCTTTCCTCCCCCTTTCCCTCCAT
CCCCCTCACCTCCCCCTCTCCTTCCTCATCCCTTCATCGTCCCTGTTTTT
CAACGCCCAAGTCCCTTTTCATTCTTACTTCTCCCCCCAAATTTCTCTAT
TCTGAAGAGAAGCATGCTAGGTTTCCTCCTCTCTTTCCTCTCTCTCTTCC
TCCCTCTTCCCTTTCACCTCCCCTGCCGTCCGTTTGCTCGCCTTTACATA
CGTCTCGCCTCCCTCCCTCCCTTCCATCCCTCCCTCCCTCCCTCCCTCCA
GCTCAAGACCCCCGCGGCCGTTGCAGCCACACGGGCTGGGACGACGACAA
GGAAGAGTCAAACGCAGGTACGCCCAAAGGGGAGGAGGAGGAGGAGGAGG
GAGGGAGGGAGGTC
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Coding sequence (CDS) from alignment at scaffold_33:26293..27206+

>mRNA_9220 ID=mRNA_9220|Name=jgi.p|Nanoce1779_2|605710|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_33:26293..27206+ (Nannochloropsis oceanica)
ATGGTGCGGCTGCTGGTGCAGCTACTGTCCAAGCCCTTCTTGCAGTCGGT
GTCATCGCGAATTATAGACACACACACACACTCTCTCTCTTACACACGTA
CATTCAATCAACTTCCTTTCCTCCCCCTTTCCCTCCATCCCCCTCACCTC
CCCCTCTCCTTCCTCATCCCTTCATCGTCCCTGTTTTTCAACGCCCAAGT
CCCTTTTCATTCTTACTTCTCCCCCCAAATTTCTCTATTCTGA
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Synonyms
Publications