jgi.p|Nanoce1779_2|574664, mRNA_922 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574664
Unique NamemRNA_922
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1723
Alignment locationscaffold_2:760981..762703 -

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Properties
Property NameValue
TranscriptId574750
TrackFilteredModels2
ProteinId574664
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:760981..762703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574664gene_922Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574664mRNA_922-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_922CDS_922Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_922 ID=mRNA_922|Name=jgi.p|Nanoce1779_2|574664|organism=Nannochloropsis oceanica|type=mRNA|length=1723bp
AACAATTTCTTGTTGGAAGGCTCCCCCTCGTATGCAAGTCCTCGAAGACG
TCAGGTTGCATGCGATAGTTCTAGAGAGATGTAGGAACGCTCAAAAGAAC
TACGTCGTCTGTTTTTTTTCGTTTTTTCGTTTTTCGTTTATTAATATATT
ATTATTGGTTTATATATTTTTTTGTCTTTCCAACCAATCTACACAGCAGG
CGGCAGTATAGCCCTAGCAAAGCCATGGCATCTCAGGCGGACTGGCGAGG
CGGTCACGGTCACGTTCACGGTCGCGAAAGTCGTGGACGAGGCACTCCTT
TGCCCAACGGCGCACAAAGCAAACTATCTCTCGACTTCTTCCGATCGGCC
GACCTGCACCTCAGGGACAGCTGCACGCTATCGTTGTATGTACCCATTGA
GCAGGTGGGTTTAGTGATTGGGAAGAAGGGGGCAAAGATCAAATACATTC
AAGACGCCAGCAGGGCCCGCGTGAGCGTGGAGCCAACGGAGGACGTCACC
GACTCAGCCTGGTCTCTCGTCAGTGTCCGAGGCAAACCCTCGGGGTGCTT
CACGGCGGCCCGCATGATCGCGGGACTCGTGGAAGAGCTAGACGATTGCA
TCGCCCAGTTTCCCCTGTTTAAAAGCCGTCTGGTCCAAGTCATCGGGAAG
AGCAGCGCCAATCTACGTCGCATAAGCGCGGACACAAACGTGCGCATTTA
CATACCGGGTTGGAAGGACAAAGAAAGCAATTACGTGCAGCTGGAAGGCG
AGGTTGACGCCGTTTTAAAAGCAGTGGTGGAGGTGGTTGATGCGGCATAT
AGTGGAGGAGGATATCGGAGCAGCAGCAATGCGGGCGGAGACAGAGAAGG
CGAGTCTGATGGCCAAGTGGCCATGGTAGATGAAGCAACGACACCGATTG
CTGCGGCTTACCCAATCACTAGTAAAGGGGCACCAACCTCAATTATAGAG
GAGATAATTCCTGTGTCTATTAGTCAACTTGATATTTTGACGAAAGGCAG
CACCAGTGCTGCAATTGTTTTGATAAGTAAACACACAGGTACGCGGATCA
AGAAGGAATCCAAGCCGCGGGAAAAGGAGAACGGCACGGTGCCAGAGGCT
GAGGAACAAGTATTTATGGACAAGTCGCAACCCAAGGACAAAGAGGCGGA
AGAAGGGGGGTACGAGGAAGGAGGCGGAGAGGGAGGAGGACCGAGGGTTC
AAATTACGTCGTCCGTCTCGCCTGGTAGCGCTGTTGTTGACAATGATGGA
GGGGACGAGGCAGACTCAGAATTCATATCGTTAAGCCCCCAGACAGGTCA
GCAAGGAGAACGAGAGGGGAATTTGATCAAGATTTGTGTGACAGGTGCTG
ACGAGAAGGCCGTCCTGGCAGCCGTGGGGGCGTTGCGAGAAGTAGGAGAA
GGCCAAGCATCGCTCCTCGAGGCGATCGCACGGCTTAAAATCGAATTTCC
CGCTTTCCAAAGCGGTAATGGAGGCCGTTCCAAATCGAAGGGAGGGATAG
GTAGGGTTGCTTGGAAGAGCAGCGATGGAGGAGGGTCGAGATTGAACAAA
CGCGGATGAGAGAAGAGCAACAGGCCCAAATGTGATGGTGCCCTTATCGG
CGATACAGGAAGTTGTAATTCAACGCCTGCGCCGTCCGCGTGATGTATTG
ATGAATGTAGATTTTTGATTTTTGGAAAGAAGCGACTGATAAAGTAATTA
TACGACCCAAAACGTGACATCCA
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protein sequence of jgi.p|Nanoce1779_2|574664

>mRNA_922-protein ID=mRNA_922-protein|Name=jgi.p|Nanoce1779_2|574664|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MASQADWRGGHGHVHGRESRGRGTPLPNGAQSKLSLDFFRSADLHLRDSC
TLSLYVPIEQVGLVIGKKGAKIKYIQDASRARVSVEPTEDVTDSAWSLVS
VRGKPSGCFTAARMIAGLVEELDDCIAQFPLFKSRLVQVIGKSSANLRRI
SADTNVRIYIPGWKDKESNYVQLEGEVDAVLKAVVEVVDAAYSGGGYRSS
SNAGGDREGESDGQVAMVDEATTPIAAAYPITSKGAPTSIIEEIIPVSIS
QLDILTKGSTSAAIVLISKHTGTRIKKESKPREKENGTVPEAEEQVFMDK
SQPKDKEAEEGGYEEGGGEGGGPRVQITSSVSPGSAVVDNDGGDEADSEF
ISLSPQTGQQGEREGNLIKICVTGADEKAVLAAVGALREVGEGQASLLEA
IARLKIEFPAFQSGNGGRSKSKGGIGRVAWKSSDGGGSRLNKRG*
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mRNA from alignment at scaffold_2:760981..762703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_922 ID=mRNA_922|Name=jgi.p|Nanoce1779_2|574664|organism=Nannochloropsis oceanica|type=mRNA|length=1723bp|location=Sequence derived from alignment at scaffold_2:760981..762703- (Nannochloropsis oceanica)
AACAATTTCTTGTTGGAAGGCTCCCCCTCGTATGCAAGTCCTCGAAGACG
TCAGGTTGCATGCGATAGTTCTAGAGAGATGTAGGAACGCTCAAAAGAAC
TACGTCGTCTGTTTTTTTTCGTTTTTTCGTTTTTCGTTTATTAATATATT
ATTATTGGTTTATATATTTTTTTGTCTTTCCAACCAATCTACACAGCAGG
CGGCAGTATAGCCCTAGCAAAGCCATGGCATCTCAGGCGGACTGGCGAGG
CGGTCACGGTCACGTTCACGGTCGCGAAAGTCGTGGACGAGGCACTCCTT
TGCCCAACGGCGCACAAAGCAAACTATCTCTCGACTTCTTCCGATCGGCC
GACCTGCACCTCAGGGACAGCTGCACGCTATCGTTGTATGTACCCATTGA
GCAGGTGGGTTTAGTGATTGGGAAGAAGGGGGCAAAGATCAAATACATTC
AAGACGCCAGCAGGGCCCGCGTGAGCGTGGAGCCAACGGAGGACGTCACC
GACTCAGCCTGGTCTCTCGTCAGTGTCCGAGGCAAACCCTCGGGGTGCTT
CACGGCGGCCCGCATGATCGCGGGACTCGTGGAAGAGCTAGACGATTGCA
TCGCCCAGTTTCCCCTGTTTAAAAGCCGTCTGGTCCAAGTCATCGGGAAG
AGCAGCGCCAATCTACGTCGCATAAGCGCGGACACAAACGTGCGCATTTA
CATACCGGGTTGGAAGGACAAAGAAAGCAATTACGTGCAGCTGGAAGGCG
AGGTTGACGCCGTTTTAAAAGCAGTGGTGGAGGTGGTTGATGCGGCATAT
AGTGGAGGAGGATATCGGAGCAGCAGCAATGCGGGCGGAGACAGAGAAGG
CGAGTCTGATGGCCAAGTGGCCATGGTAGATGAAGCAACGACACCGATTG
CTGCGGCTTACCCAATCACTAGTAAAGGGGCACCAACCTCAATTATAGAG
GAGATAATTCCTGTGTCTATTAGTCAACTTGATATTTTGACGAAAGGCAG
CACCAGTGCTGCAATTGTTTTGATAAGTAAACACACAGGTACGCGGATCA
AGAAGGAATCCAAGCCGCGGGAAAAGGAGAACGGCACGGTGCCAGAGGCT
GAGGAACAAGTATTTATGGACAAGTCGCAACCCAAGGACAAAGAGGCGGA
AGAAGGGGGGTACGAGGAAGGAGGCGGAGAGGGAGGAGGACCGAGGGTTC
AAATTACGTCGTCCGTCTCGCCTGGTAGCGCTGTTGTTGACAATGATGGA
GGGGACGAGGCAGACTCAGAATTCATATCGTTAAGCCCCCAGACAGGTCA
GCAAGGAGAACGAGAGGGGAATTTGATCAAGATTTGTGTGACAGGTGCTG
ACGAGAAGGCCGTCCTGGCAGCCGTGGGGGCGTTGCGAGAAGTAGGAGAA
GGCCAAGCATCGCTCCTCGAGGCGATCGCACGGCTTAAAATCGAATTTCC
CGCTTTCCAAAGCGGTAATGGAGGCCGTTCCAAATCGAAGGGAGGGATAG
GTAGGGTTGCTTGGAAGAGCAGCGATGGAGGAGGGTCGAGATTGAACAAA
CGCGGATGAGAGAAGAGCAACAGGCCCAAATGTGATGGTGCCCTTATCGG
CGATACAGGAAGTTGTAATTCAACGCCTGCGCCGTCCGCGTGATGTATTG
ATGAATGTAGATTTTTGATTTTTGGAAAGAAGCGACTGATAAAGTAATTA
TACGACCCAAAACGTGACATCCA
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Coding sequence (CDS) from alignment at scaffold_2:760981..762703-

>mRNA_922 ID=mRNA_922|Name=jgi.p|Nanoce1779_2|574664|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at scaffold_2:760981..762703- (Nannochloropsis oceanica)
ATGGCATCTCAGGCGGACTGGCGAGGCGGTCACGGTCACGTTCACGGTCG
CGAAAGTCGTGGACGAGGCACTCCTTTGCCCAACGGCGCACAAAGCAAAC
TATCTCTCGACTTCTTCCGATCGGCCGACCTGCACCTCAGGGACAGCTGC
ACGCTATCGTTGTATGTACCCATTGAGCAGGTGGGTTTAGTGATTGGGAA
GAAGGGGGCAAAGATCAAATACATTCAAGACGCCAGCAGGGCCCGCGTGA
GCGTGGAGCCAACGGAGGACGTCACCGACTCAGCCTGGTCTCTCGTCAGT
GTCCGAGGCAAACCCTCGGGGTGCTTCACGGCGGCCCGCATGATCGCGGG
ACTCGTGGAAGAGCTAGACGATTGCATCGCCCAGTTTCCCCTGTTTAAAA
GCCGTCTGGTCCAAGTCATCGGGAAGAGCAGCGCCAATCTACGTCGCATA
AGCGCGGACACAAACGTGCGCATTTACATACCGGGTTGGAAGGACAAAGA
AAGCAATTACGTGCAGCTGGAAGGCGAGGTTGACGCCGTTTTAAAAGCAG
TGGTGGAGGTGGTTGATGCGGCATATAGTGGAGGAGGATATCGGAGCAGC
AGCAATGCGGGCGGAGACAGAGAAGGCGAGTCTGATGGCCAAGTGGCCAT
GGTAGATGAAGCAACGACACCGATTGCTGCGGCTTACCCAATCACTAGTA
AAGGGGCACCAACCTCAATTATAGAGGAGATAATTCCTGTGTCTATTAGT
CAACTTGATATTTTGACGAAAGGCAGCACCAGTGCTGCAATTGTTTTGAT
AAGTAAACACACAGGTACGCGGATCAAGAAGGAATCCAAGCCGCGGGAAA
AGGAGAACGGCACGGTGCCAGAGGCTGAGGAACAAGTATTTATGGACAAG
TCGCAACCCAAGGACAAAGAGGCGGAAGAAGGGGGGTACGAGGAAGGAGG
CGGAGAGGGAGGAGGACCGAGGGTTCAAATTACGTCGTCCGTCTCGCCTG
GTAGCGCTGTTGTTGACAATGATGGAGGGGACGAGGCAGACTCAGAATTC
ATATCGTTAAGCCCCCAGACAGGTCAGCAAGGAGAACGAGAGGGGAATTT
GATCAAGATTTGTGTGACAGGTGCTGACGAGAAGGCCGTCCTGGCAGCCG
TGGGGGCGTTGCGAGAAGTAGGAGAAGGCCAAGCATCGCTCCTCGAGGCG
ATCGCACGGCTTAAAATCGAATTTCCCGCTTTCCAAAGCGGTAATGGAGG
CCGTTCCAAATCGAAGGGAGGGATAGGTAGGGTTGCTTGGAAGAGCAGCG
ATGGAGGAGGGTCGAGATTGAACAAACGCGGATGA
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Synonyms
Publications