jgi.p|Nanoce1779_2|605701, mRNA_9218 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605701
Unique NamemRNA_9218
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length563
Alignment locationscaffold_33:17246..17948 -

Link to JBrowse

Properties
Property NameValue
TranscriptId605787
TrackFilteredModels2
ProteinId605701
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:17246..17948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605701gene_9218Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605701mRNA_9218-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9218CDS_9218Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9218 ID=mRNA_9218|Name=jgi.p|Nanoce1779_2|605701|organism=Nannochloropsis oceanica|type=mRNA|length=563bp
GCACGGCAAGCATCGACCTGGCCATGCATTGCTGCTATATGTAATGCAGT
CGCCCCATCATCGTCTCGAGGGGTGGAGAGGAGGGAAGGAAGGAGGGTAT
AGGGAAGGCCGGTCTTGCCTAGCTCGGTGATAACAGCCTTGATTACATCT
GTCCGTCCATGCATGCTTGCTGCATGCAGCACTCGAATCTCTTCCTGTTG
GTGCTTATCTTCCTCTGTCTGTCCTCCCCCCGTTGTTGGTGGGGCCATGC
TAATGTGGCACTGAAGGTGGCACGGTTGGCTACTGCTACACCTCCGTGCA
TTGTTTGTGGTCGGTATACGAGGGTGGGTAGAATGGAATGTGGTGGTGAT
GATAATGGGTGCCGTCAAGAAGGAGCAGTGACATAAGGACCTCCATGACT
TGACACACAGGACCAGGTGAGGCACACAAAGCTTTGGATTCATGCGCGTG
ACGGTGTGTCATTTTTGGGTGTCAGATGGGAGAAGGAAGGTGTTGCATCA
CGCCATGCCCATGCAGGAATTGAAGAAGCCATTTCAAACCGTTAGTACTG
AGTAACGATCTGT
back to top

protein sequence of jgi.p|Nanoce1779_2|605701

>mRNA_9218-protein ID=mRNA_9218-protein|Name=jgi.p|Nanoce1779_2|605701|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MHACCMQHSNLFLLVLIFLCLSSPRCWWGHANVALKVARLATATPPCIVC
GRYTRVGRMECGGDDNGCRQEGAV
back to top

mRNA from alignment at scaffold_33:17246..17948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9218 ID=mRNA_9218|Name=jgi.p|Nanoce1779_2|605701|organism=Nannochloropsis oceanica|type=mRNA|length=703bp|location=Sequence derived from alignment at scaffold_33:17246..17948- (Nannochloropsis oceanica)
GCACGGCAAGCATCGACCTGGCCATGCATTGCTGCTATATGTAATGCAGT
CGCCCCATCATCGTCTCGAGGGGTGGAGAGGAGGGAAGGAAGGAGGGTAT
AGGGAAGGCCGGTCTTGCCTAGCTCGGTGATAACAGCCTGAAAGGACAAA
ATGGAGGGAGGGAAGGGAAAAGGGAGCGATGAATACAATTGCAATATGTA
TAGATGTGTGCTTTTCTACTTCTCAGTCTCTCACACTCTCTTTCATCATT
CCTCCCTGCTTTTGTGTTTCCACCGACCTTGATTACATCTGTCCGTCCAT
GCATGCTTGCTGCATGCAGCACTCGAATCTCTTCCTGTTGGTGCTTATCT
TCCTCTGTCTGTCCTCCCCCCGTTGTTGGTGGGGCCATGCTAATGTGGCA
CTGAAGGTGGCACGGTTGGCTACTGCTACACCTCCGTGCATTGTTTGTGG
TCGGTATACGAGGGTGGGTAGAATGGAATGTGGTGGTGATGATAATGGGT
GCCGTCAAGAAGGAGCAGTGACATAAGGACCTCCATGACTTGACACACAG
GACCAGGTGAGGCACACAAAGCTTTGGATTCATGCGCGTGACGGTGTGTC
ATTTTTGGGTGTCAGATGGGAGAAGGAAGGTGTTGCATCACGCCATGCCC
ATGCAGGAATTGAAGAAGCCATTTCAAACCGTTAGTACTGAGTAACGATC
TGT
back to top

Coding sequence (CDS) from alignment at scaffold_33:17246..17948-

>mRNA_9218 ID=mRNA_9218|Name=jgi.p|Nanoce1779_2|605701|organism=Nannochloropsis oceanica|type=CDS|length=223bp|location=Sequence derived from alignment at scaffold_33:17246..17948- (Nannochloropsis oceanica)
ATGCATGCTTGCTGCATGCAGCACTCGAATCTCTTCCTGTTGGTGCTTAT
CTTCCTCTGTCTGTCCTCCCCCCGTTGTTGGTGGGGCCATGCTAATGTGG
CACTGAAGGTGGCACGGTTGGCTACTGCTACACCTCCGTGCATTGTTTGT
GGTCGGTATACGAGGGTGGGTAGAATGGAATGTGGTGGTGATGATAATGG
GTGCCGTCAAGAAGGAGCAGTGA
back to top
Synonyms
Publications