jgi.p|Nanoce1779_2|263951, mRNA_9217 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|263951
Unique Name	mRNA_9217
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1994
Alignment location	scaffold_33:14898..17007 +

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Properties


Property Name	Value
TranscriptId	264037
Track	FilteredModels2
ProteinId	263951

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:14898..17007 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|263951	gene_9217	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|263951	mRNA_9217-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9217	CDS_9217	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:14898..17007+
coding sequence from alignment at scaffold_33:14898..17007+

mRNA sequence

>mRNA_9217 ID=mRNA_9217|Name=jgi.p|Nanoce1779_2|263951|organism=Nannochloropsis oceanica|type=mRNA|length=1994bp
AATGAGGAAATGTGAAACGACGATGGGAAGCAAAAAAACATGATATGGTT
TTGTCACTGGTCGATATTCCTTGTGCATTGCATTGAGCACGGTGCAATCC
CCTGAAATCTGACGCAACATTGAAGACACCCTGCACATACACCGTATACA
GGACTTCCGCACCATGTTCGCCTGGGCCCGCCGCTTGCTAAGGAAAACTA
GCACCTCCCTGGTTTCGTCCTTCCAATCTTTTCCCCTCGCAAAACAACAA
ATCCTCGAGGTCGACGCGGACTTGTTGCGGGAAGTGCTCCTCTTCCTTGG
CACTGACATCGTCGAATGCCATGCCGTCTTGACGGTCAACCACTTCTGGG
GGAAGGTCCTCGCAAGTGCTGACCCATGGACGCACCTCCTTCGTCGCGAT
TACCCCAGCATGGTGAGAGCGGAATCCATTCTCCCCTATGGTCAGCCACA
TCACCTTCTGCGCCGCACCGCAAAGGATCTATTGCGCCTCCGGCTCACAA
ATGCCAACCGCAACAGCAACGAAGATGAGATGGAAATCCAACGCCTTGAG
AAAGAGTTCTGCAACGCACATATGACTTTTCTTGTCCGTCACCCAGCGCA
TGGAATCGTCGCTGAGTCCAGGATCCCCATTTTGCCTGCTAAAGATGATG
AAAACAACTTGTCCGATATCTTCCAAGAAATGACGATGCACTGTATTTTG
CCGCTGTCCGAATACGAGGAATGCGAGATGGAATGGAAGATGCCTGGAGG
GCTGACGTTGCTTCATTTTGGTGACTTGGTCGCGGAACCGGATCTGGCGA
CAGACAAAGCGCAACGCTGGGTGATGTGGGCGAGCTTTCAAAAAATGCAT
GGATGTATGAACTTTGGCTTCATCAAGGACTATTTTGATTACTTCTCTTA
TCCCCAGTTCTTAGTTACATGTGAATATGCTGCCTATGTTCTCAATAATA
AGCGGAAACACAAGGACATCTTAAATAGAGGCCTTCACACAGTCATGCCG
GAATCTGTGAAAGGGTTTTGTACCCTTGAGGACATTTCCTTTTTCCCCTA
TCATCCGACGCCACTGGAATGCCTGAAGACGTGGGAGAGCTGGACAGCCG
TTGCGCTGCAACTTCAAGACGACACCACGGAGTTCACCCGCCTGCGGTCG
CGGTTTAAGGAGACTTTTCTGGTGGTAGAAATGGGTGTGGGGTGGGAAAT
GAAAGTAGCGGGAAAGTGTGGAAAGGAACAAAATGAAAATGAGCATGAGA
AGCTTCGACAGGAGATGGACACCTTGGCTTTTGTGCTGGTGCCTCTACTG
GACGAACCTGGGCTGATGAATCTTCTCAACGCCCAAAGCACGTGCCTCCA
GTTCGTGGAAGAAGGGGGAAGGGCCGAACGGTTGTTGCCACTCGAAAATC
AGTTCGCCAGAATTTTAATTCTGGATTTGGGGAACGAGCGTGTGTATAAC
CTAAGTGAATCCTATTTTCCTGTGAGCATGTCTGGTGGTGGTGAACCGAT
GGGACTATACGATTTTACGGCTACACGTCGCTTCTTCTGCTTCGATCGAG
AGATTCAAATCTTTCCCAGCTTCGAAGAAAAAGCTGTTCCCTCCGAAAAG
GGAGAAGACATTAGTTATGTAGTGACGGTCAAGCTGGATGTTGTAACGCA
CTGCCGCGACGAGGACGAGGATGAAGACGAGGATGAGGATGGAGACGAAG
ACGAAGATGGCGAGGTGCTAGAGTTTACATCTGTGCTGGAGCTATGGAAA
TTTTTGGAGCTTTCTTTGATGGCATCACAGGTCAATTATGCAAAATCAGC
TTAGTTTTCTGTGATTCCTTAGAAGATCTTCTCGTCTACTGTAGAAATAG
AGCGGGAAACATTTGGAGTGTTCTGCATCAATCGCATCCCCAAAGGAAAG
CAAGAGAAACCAATCGATCATCCAGAAGCAAGAAAAGAGGAAGTGACAAA
AGAAAGTTATTTTAGCAATGTTTGTCATTATGGTTATAATCCAT

protein sequence of jgi.p|Nanoce1779_2|263951

>mRNA_9217-protein ID=mRNA_9217-protein|Name=jgi.p|Nanoce1779_2|263951|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MFAWARRLLRKTSTSLVSSFQSFPLAKQQILEVDADLLREVLLFLGTDIV
ECHAVLTVNHFWGKVLASADPWTHLLRRDYPSMVRAESILPYGQPHHLLR
RTAKDLLRLRLTNANRNSNEDEMEIQRLEKEFCNAHMTFLVRHPAHGIVA
ESRIPILPAKDDENNLSDIFQEMTMHCILPLSEYEECEMEWKMPGGLTLL
HFGDLVAEPDLATDKAQRWVMWASFQKMHGCMNFGFIKDYFDYFSYPQFL
VTCEYAAYVLNNKRKHKDILNRGLHTVMPESVKGFCTLEDISFFPYHPTP
LECLKTWESWTAVALQLQDDTTEFTRLRSRFKETFLVVEMGVGWEMKVAG
KCGKEQNENEHEKLRQEMDTLAFVLVPLLDEPGLMNLLNAQSTCLQFVEE
GGRAERLLPLENQFARILILDLGNERVYNLSESYFPVSMSGGGEPMGLYD
FTATRRFFCFDREIQIFPSFEEKAVPSEKGEDISYVVTVKLDVVTHCRDE
DEDEDEDEDGDEDEDGEVLEFTSVLELWKFLELSLMASQVNYAKSA*

mRNA from alignment at scaffold_33:14898..17007+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9217 ID=mRNA_9217|Name=jgi.p|Nanoce1779_2|263951|organism=Nannochloropsis oceanica|type=mRNA|length=2110bp|location=Sequence derived from alignment at scaffold_33:14898..17007+ (Nannochloropsis oceanica)
AATGAGGAAATGTGAAACGACGATGGGAAGCAAAAAAACATGATATGGTT
TTGTCACTGGTCGATATTCCTTGTGCATTGCATTGAGCACGGTGCAATCC
CCTGAAATCTGACGCAACATTGAAGACACCCTGCACATACACCGTATACA
GGACTTCCGCACCATGTTCGCCTGGGCCCGCCGCTTGCTAAGGAAAACTA
GCACCTCCCTGGTTTCGTCCTTCCAATCTTTTCCCCTCGCAAAACAACAA
ATCCTCGAGGTCGACGCGGACTTGTTGCGGGAAGTGCTCCTCTTCCTTGG
CACTGACATCGTCGAATGCCATGCCGTCTTGACGGTCAACCACTTCTGGG
GGAAGGTCCTCGCAAGGTAAGGAACCTTGCGCAAGGGATGCAAACTACGA
AGTTATCAGCCCTCAGTTTTAATGTGACCAAGACGCCACCAAACCCCAAC
CCTTTTGTGGTGATATCTATACACTACCATAGTGCTGACCCATGGACGCA
CCTCCTTCGTCGCGATTACCCCAGCATGGTGAGAGCGGAATCCATTCTCC
CCTATGGTCAGCCACATCACCTTCTGCGCCGCACCGCAAAGGATCTATTG
CGCCTCCGGCTCACAAATGCCAACCGCAACAGCAACGAAGATGAGATGGA
AATCCAACGCCTTGAGAAAGAGTTCTGCAACGCACATATGACTTTTCTTG
TCCGTCACCCAGCGCATGGAATCGTCGCTGAGTCCAGGATCCCCATTTTG
CCTGCTAAAGATGATGAAAACAACTTGTCCGATATCTTCCAAGAAATGAC
GATGCACTGTATTTTGCCGCTGTCCGAATACGAGGAATGCGAGATGGAAT
GGAAGATGCCTGGAGGGCTGACGTTGCTTCATTTTGGTGACTTGGTCGCG
GAACCGGATCTGGCGACAGACAAAGCGCAACGCTGGGTGATGTGGGCGAG
CTTTCAAAAAATGCATGGATGTATGAACTTTGGCTTCATCAAGGACTATT
TTGATTACTTCTCTTATCCCCAGTTCTTAGTTACATGTGAATATGCTGCC
TATGTTCTCAATAATAAGCGGAAACACAAGGACATCTTAAATAGAGGCCT
TCACACAGTCATGCCGGAATCTGTGAAAGGGTTTTGTACCCTTGAGGACA
TTTCCTTTTTCCCCTATCATCCGACGCCACTGGAATGCCTGAAGACGTGG
GAGAGCTGGACAGCCGTTGCGCTGCAACTTCAAGACGACACCACGGAGTT
CACCCGCCTGCGGTCGCGGTTTAAGGAGACTTTTCTGGTGGTAGAAATGG
GTGTGGGGTGGGAAATGAAAGTAGCGGGAAAGTGTGGAAAGGAACAAAAT
GAAAATGAGCATGAGAAGCTTCGACAGGAGATGGACACCTTGGCTTTTGT
GCTGGTGCCTCTACTGGACGAACCTGGGCTGATGAATCTTCTCAACGCCC
AAAGCACGTGCCTCCAGTTCGTGGAAGAAGGGGGAAGGGCCGAACGGTTG
TTGCCACTCGAAAATCAGTTCGCCAGAATTTTAATTCTGGATTTGGGGAA
CGAGCGTGTGTATAACCTAAGTGAATCCTATTTTCCTGTGAGCATGTCTG
GTGGTGGTGAACCGATGGGACTATACGATTTTACGGCTACACGTCGCTTC
TTCTGCTTCGATCGAGAGATTCAAATCTTTCCCAGCTTCGAAGAAAAAGC
TGTTCCCTCCGAAAAGGGAGAAGACATTAGTTATGTAGTGACGGTCAAGC
TGGATGTTGTAACGCACTGCCGCGACGAGGACGAGGATGAAGACGAGGAT
GAGGATGGAGACGAAGACGAAGATGGCGAGGTGCTAGAGTTTACATCTGT
GCTGGAGCTATGGAAATTTTTGGAGCTTTCTTTGATGGCATCACAGGTCA
ATTATGCAAAATCAGCTTAGTTTTCTGTGATTCCTTAGAAGATCTTCTCG
TCTACTGTAGAAATAGAGCGGGAAACATTTGGAGTGTTCTGCATCAATCG
CATCCCCAAAGGAAAGCAAGAGAAACCAATCGATCATCCAGAAGCAAGAA
AAGAGGAAGTGACAAAAGAAAGTTATTTTAGCAATGTTTGTCATTATGGT
TATAATCCAT

Coding sequence (CDS) from alignment at scaffold_33:14898..17007+

>mRNA_9217 ID=mRNA_9217|Name=jgi.p|Nanoce1779_2|263951|organism=Nannochloropsis oceanica|type=CDS|length=3282bp|location=Sequence derived from alignment at scaffold_33:14898..17007+ (Nannochloropsis oceanica)
ATGTTCGCCTGGGCCCGCCGCTTGCTAAGGAAAACTAGCACCTCCCTGGT
TTCGTCCTTCCAATCTTTTCCCCTCGCAAAACAACAAATCCTCGAGGTCG
ACGCGGACTTGTTGCGGGAAGTGCTCCTCTTCCTTGGCACTGACATCGTC
GAATGCCATGCCGTCTTGACGGTCAACCACTTCTGGGGGAAGGTCCTCGC
AAGTGCTGACCCATGGACGCACCTCCTTCGTCGCGATTACCCCAGCATGG
TGAGAGCGGAATCCATTCTCCCCTATGGTCAGCCACATCACCTTCTGCGC
CGCACCGCAAAGGATCTATTGCGCCTCCGGCTCACAAATGCCAACCGCAA
CAGCAACGAAGATGAGATGGAAATCCAACGCCTTGAGAAAGAGTTCTGCA
ACGCACATATGACTTTTCTTGTCCGTCACCCAGCGCATGGAATCGTCGCT
GAGTCCAGGATCCCCATTTTGCCTGCTAAAGATGATGAAAACAACTTGTC
CGATATCTTCCAAGAAATGACGATGCACTGTATTTTGCCGCTGTCCGAAT
ACGAGGAATGCGAGATGGAATGGAAGATGCCTGGAGGGCTGACGTTGCTT
CATTTTGGTGACTTGGTCGCGGAACCGGATCTGGCGACAGACAAAGCGCA
ACGCTGGGTGATGTGGGCGAGCTTTCAAAAAATGCATGGATGTATGAACT
TTGGCTTCATCAAGGACTATTTTGATTACTTCTCTTATCCCCAGTTCTTA
GTTACATGTGAATATGCTGCCTATGTTCTCAATAATAAGCGGAAACACAA
GGACATCTTAAATAGAGGCCTTCACACAGTCATGCCGGAATCTGTGAAAG
GGTTTTGTACCCTTGAGGACATTTCCTTTTTCCCCTATCATCCGACGCCA
CTGGAATGCCTGAAGACGTGGGAGAGCTGGACAGCCGTTGCGCTGCAACT
TCAAGACGACACCACGGAGTTCACCCGCCTGCGGTCGCGGTTTAAGGAGA
CTTTTCTGGTGGTAGAAATGGGTGTGGGGTGGGAAATGAAAGTAGCGGGA
AAGTGTGGAAAGGAACAAAATGAAAATGAGCATGAGAAGCTTCGACAGGA
GATGGACACCTTGGCTTTTGTGCTGGTGCCTCTACTGGACGAACCTGGGC
TGATGAATCTTCTCAACGCCCAAAGCACGTGCCTCCAGTTCGTGGAAGAA
GGGGGAAGGGCCGAACGGTTGTTGCCACTCGAAAATCAGTTCGCCAGAAT
TTTAATTCTGGATTTGGGGAACGAGCGTGTGTATAACCTAAGTGAATCCT
ATTTTCCTGTGAGCATGTCTGGTGGTGGTGAACCGATGGGACTATACGAT
TTTACGGCTACACGTCGCTTCTTCTGCTTCGATCGAGAGATTCAAATCTT
TCCCAGCTTCGAAGAAAAAGCTGTTCCCTCCGAAAAGGGAGAAGACATTA
GTTATGTAGTGACGGTCAAGCTGGATGTTGTAACGCACTGCCGCGACGAG
GACGAGGATGAAGACGAGGATGAGGATGGAGACGAAGACGAAGATGGCGA
GGTGCTAGAGTTTACATCTGTGCTGGAGCTATGGAAATTTTTGGAGCTTT
CTTTGATGGCATCACAGGTCAATTATGCAAAATCAGCTTAGATGTTCGCC
TGGGCCCGCCGCTTGCTAAGGAAAACTAGCACCTCCCTGGTTTCGTCCTT
CCAATCTTTTCCCCTCGCAAAACAACAAATCCTCGAGGTCGACGCGGACT
TGTTGCGGGAAGTGCTCCTCTTCCTTGGCACTGACATCGTCGAATGCCAT
GCCGTCTTGACGGTCAACCACTTCTGGGGGAAGGTCCTCGCAAGTGCTGA
CCCATGGACGCACCTCCTTCGTCGCGATTACCCCAGCATGGTGAGAGCGG
AATCCATTCTCCCCTATGGTCAGCCACATCACCTTCTGCGCCGCACCGCA
AAGGATCTATTGCGCCTCCGGCTCACAAATGCCAACCGCAACAGCAACGA
AGATGAGATGGAAATCCAACGCCTTGAGAAAGAGTTCTGCAACGCACATA
TGACTTTTCTTGTCCGTCACCCAGCGCATGGAATCGTCGCTGAGTCCAGG
ATCCCCATTTTGCCTGCTAAAGATGATGAAAACAACTTGTCCGATATCTT
CCAAGAAATGACGATGCACTGTATTTTGCCGCTGTCCGAATACGAGGAAT
GCGAGATGGAATGGAAGATGCCTGGAGGGCTGACGTTGCTTCATTTTGGT
GACTTGGTCGCGGAACCGGATCTGGCGACAGACAAAGCGCAACGCTGGGT
GATGTGGGCGAGCTTTCAAAAAATGCATGGATGTATGAACTTTGGCTTCA
TCAAGGACTATTTTGATTACTTCTCTTATCCCCAGTTCTTAGTTACATGT
GAATATGCTGCCTATGTTCTCAATAATAAGCGGAAACACAAGGACATCTT
AAATAGAGGCCTTCACACAGTCATGCCGGAATCTGTGAAAGGGTTTTGTA
CCCTTGAGGACATTTCCTTTTTCCCCTATCATCCGACGCCACTGGAATGC
CTGAAGACGTGGGAGAGCTGGACAGCCGTTGCGCTGCAACTTCAAGACGA
CACCACGGAGTTCACCCGCCTGCGGTCGCGGTTTAAGGAGACTTTTCTGG
TGGTAGAAATGGGTGTGGGGTGGGAAATGAAAGTAGCGGGAAAGTGTGGA
AAGGAACAAAATGAAAATGAGCATGAGAAGCTTCGACAGGAGATGGACAC
CTTGGCTTTTGTGCTGGTGCCTCTACTGGACGAACCTGGGCTGATGAATC
TTCTCAACGCCCAAAGCACGTGCCTCCAGTTCGTGGAAGAAGGGGGAAGG
GCCGAACGGTTGTTGCCACTCGAAAATCAGTTCGCCAGAATTTTAATTCT
GGATTTGGGGAACGAGCGTGTGTATAACCTAAGTGAATCCTATTTTCCTG
TGAGCATGTCTGGTGGTGGTGAACCGATGGGACTATACGATTTTACGGCT
ACACGTCGCTTCTTCTGCTTCGATCGAGAGATTCAAATCTTTCCCAGCTT
CGAAGAAAAAGCTGTTCCCTCCGAAAAGGGAGAAGACATTAGTTATGTAG
TGACGGTCAAGCTGGATGTTGTAACGCACTGCCGCGACGAGGACGAGGAT
GAAGACGAGGATGAGGATGGAGACGAAGACGAAGATGGCGAGGTGCTAGA
GTTTACATCTGTGCTGGAGCTATGGAAATTTTTGGAGCTTTCTTTGATGG
CATCACAGGTCAATTATGCAAAATCAGCTTAG

Synonyms

Publications