jgi.p|Nanoce1779_2|263897, mRNA_9216 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|263897
Unique NamemRNA_9216
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length778
Alignment locationscaffold_33:11557..12466 -

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Properties
Property NameValue
TranscriptId263983
TrackFilteredModels2
ProteinId263897
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:11557..12466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|263897gene_9216Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|263897mRNA_9216-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9216CDS_9216Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9216 ID=mRNA_9216|Name=jgi.p|Nanoce1779_2|263897|organism=Nannochloropsis oceanica|type=mRNA|length=778bp
CCCTTCTCTCCCGCCCGTGCTGATTGTCATCCAGCATCCCTTTCCCCCTC
CTCCTCCTCCCGCTTCTCTATCGCCCCTCCTTCCCTCCCTCCCTCCTCCG
TCTTCATCCCTCGTATGAAAGCTATCCGGGAAAAATGTGTGGGGAGATGC
CCTGCTCTGTTGCTTTGCCTAGATCGCCCATTACTGCTGCTGCTGCTGCT
GCTGCTGGCGCTACCAGCACCAGCACTATTCTCCCTCCTTCCATTCCATC
CTTTCCTTCCTCCTTCTCCCCCTCCTCCTCCGATTCGTCCTTCCCTCCTC
ACGTTGCATCAAGGAAGAACGTCGGCTCAAGCCCGGCAGGGACCATACAC
TCATCTAGCCTACTCATACTCAACAGGGCATCCCAAGCTTGTCGACCCGC
TCGTGGCCATCAGCATTGACGAGGACGAGGAGGAGGCTTCAACCACGGCT
TCCTTCAATGGGGCCCTGTCTGTTCCTCCCTCCCCCCCCCCCTCTCCCTC
TATCTTTACCGCCCTTCCACTCGACCATATATTTATTTTCTTCATCATCA
CCTCTCTCGTCCGCTTCTTCTCCGAGCAAGAAGCAGCGGATCACCTAGTT
TCCCTCCTCCTCCTCGTACTCCTCCTCCTTCATAGGGTTAGAAGGGAGGG
AGGTATGAAGATGGCACGGATGATATATATGTGAGGGAGCTCGAGGGGAG
CGAGAATTGAAAGAGGGAGTGGGTGTCGGCGTGGGTGTGGAGATACATAT
GTGTGAACAGCAACAACGACTTCCCACC
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protein sequence of jgi.p|Nanoce1779_2|263897

>mRNA_9216-protein ID=mRNA_9216-protein|Name=jgi.p|Nanoce1779_2|263897|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MKAIREKCVGRCPALLLCLDRPLLLLLLLLLALPAPALFSLLPFHPFLPP
SPPPPPIRPSLLTLHQGRTSAQARQGPYTHLAYSYSTGHPKLVDPLVAIS
IDEDEEEASTTASFNGALSVPPSPPPSPSIFTALPLDHIFIFFIITSLVR
FFSEQEAADHLVSLLLLVLLLLHRVRREGGMKMARMIYM*
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mRNA from alignment at scaffold_33:11557..12466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9216 ID=mRNA_9216|Name=jgi.p|Nanoce1779_2|263897|organism=Nannochloropsis oceanica|type=mRNA|length=910bp|location=Sequence derived from alignment at scaffold_33:11557..12466- (Nannochloropsis oceanica)
CCCTTCTCTCCCGCCCGTGCTGATTGTCATCCAGCATCCCTTTCCCCCTC
CTCCTCCTCCCGCTTCTCTATCGCCCCTCCTTCCCTCCCTCCCTCCTCCG
TCTTCATCCCTCGTATGAAAGCTATCCGGGAAAAATGTGTGGGGAGATGC
CCTGCTCTGTTGCTTTGCCTAGGTAAGGAAGGGGGTAGGAAGGAGGTAGG
AAGGGAGGGTAGGAAGCAAGGAGGATAGGAGGGAGGTAGGGAAGAAGGAA
AGGACTGCATGTAACCTTTTCTCCCTTCCTTCCTCCCTCCTTACCTCCGG
ATAGATCGCCCATTACTGCTGCTGCTGCTGCTGCTGCTGGCGCTACCAGC
ACCAGCACTATTCTCCCTCCTTCCATTCCATCCTTTCCTTCCTCCTTCTC
CCCCTCCTCCTCCGATTCGTCCTTCCCTCCTCACGTTGCATCAAGGAAGA
ACGTCGGCTCAAGCCCGGCAGGGACCATACACTCATCTAGCCTACTCATA
CTCAACAGGGCATCCCAAGCTTGTCGACCCGCTCGTGGCCATCAGCATTG
ACGAGGACGAGGAGGAGGCTTCAACCACGGCTTCCTTCAATGGGGCCCTG
TCTGTTCCTCCCTCCCCCCCCCCCTCTCCCTCTATCTTTACCGCCCTTCC
ACTCGACCATATATTTATTTTCTTCATCATCACCTCTCTCGTCCGCTTCT
TCTCCGAGCAAGAAGCAGCGGATCACCTAGTTTCCCTCCTCCTCCTCGTA
CTCCTCCTCCTTCATAGGGTTAGAAGGGAGGGAGGTATGAAGATGGCACG
GATGATATATATGTGAGGGAGCTCGAGGGGAGCGAGAATTGAAAGAGGGA
GTGGGTGTCGGCGTGGGTGTGGAGATACATATGTGTGAACAGCAACAACG
ACTTCCCACC
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Coding sequence (CDS) from alignment at scaffold_33:11557..12466-

>mRNA_9216 ID=mRNA_9216|Name=jgi.p|Nanoce1779_2|263897|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_33:11557..12466- (Nannochloropsis oceanica)
ATCGCCCATTACTGCTGCTGCTGCTGCTGCTGCTGGCGCTACCAGCACCA
GCACTATTCTCCCTCCTTCCATTCCATCCTTTCCTTCCTCCTTCTCCCCC
TCCTCCTCCGATTCGTCCTTCCCTCCTCACGTTGCATCAAGGAAGAACGT
CGGCTCAAGCCCGGCAGGGACCATACACTCATCTAGCCTACTCATACTCA
ACAGGGCATCCCAAGCTTGTCGACCCGCTCGTGGCCATCAGCATTGACGA
GGACGAGGAGGAGGCTTCAACCACGGCTTCCTTCAATGGGGCCCTGTCTG
TTCCTCCCTCCCCCCCCCCCTCTCCCTCTATCTTTACCGCCCTTCCACTC
GACCATATATTTATTTTCTTCATCATCACCTCTCTCGTCCGCTTCTTCTC
CGAGCAAGAAGCAGCGGATCACCTAGTTTCCCTCCTCCTCCTCGTACTCC
TCCTCCTTCATAGGGTTAGAAGGGAGGGAGGTATGAAGATGGCACGGATG
ATATATATGTGAATGAAAGCTATCCGGGAAAAATGTGTGGGGAGATGCCC
TGCTCTGTTGCTTTGCCTAGATCGCCCATTACTGCTGCTGCTGCTGCTGC
TGCTGGCGCTACCAGCACCAGCACTATTCTCCCTCCTTCCATTCCATCCT
TTCCTTCCTCCTTCTCCCCCTCCTCCTCCGATTCGTCCTTCCCTCCTCAC
GTTGCATCAAGGAAGAACGTCGGCTCAAGCCCGGCAGGGACCATACACTC
ATCTAGCCTACTCATACTCAACAGGGCATCCCAAGCTTGTCGACCCGCTC
GTGGCCATCAGCATTGACGAGGACGAGGAGGAGGCTTCAACCACGGCTTC
CTTCAATGGGGCCCTGTCTGTTCCTCCCTCCCCCCCCCCCTCTCCCTCTA
TCTTTACCGCCCTTCCACTCGACCATATATTTATTTTCTTCATCATCACC
TCTCTCGTCCGCTTCTTCTCCGAGCAAGAAGCAGCGGATCACCTAGTTTC
CCTCCTCCTCCTCGTACTCCTCCTCCTTCATAGGGTTAGAAGGGAGGGAG
GTATGAAGATGGCACGGATGATATATATGTGAATGAAAGCTATCCGGGAA
AAATGTGTGGGGAGATGCCCTGCTCTGTTGCTTTGCCTAG
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Synonyms
Publications