jgi.p|Nanoce1779_2|605687, mRNA_9215 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605687
Unique NamemRNA_9215
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length734
Alignment locationscaffold_33:7939..8672 -

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Properties
Property NameValue
TranscriptId605773
TrackFilteredModels2
ProteinId605687
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:7939..8672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605687gene_9215Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605687mRNA_9215-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9215CDS_9215Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9215 ID=mRNA_9215|Name=jgi.p|Nanoce1779_2|605687|organism=Nannochloropsis oceanica|type=mRNA|length=734bp
CATGGGTATAAAACGACAACTACCGCATTTCCTTCTTTTCATTTGTTCGT
TTGTTCAATACGTGGGCTCCATACATATCACCCACTTTCGTGGAGGAACT
CAGATACCCTCACCTCGTAGGGCGTGCGGACGAGGACAGGGCTGCCATTC
ACCGTCACACGACTCCCATCGTGCACCGTGGGCTCAGGGATCTCCATCTC
CAAGCGAGGGACTCTTTTCAGGTTCTTCCCCCCCCCACCAAGCCCACCTT
TTACCTCTTCTCCGCTTCTCTTCACCCACATTTGGTCAGTGTAGGTCTTA
CATTTGTCCGCCGTGAACCCAGCGAAGGCAGGCACAAAAGCAGGGTAGTG
TTTTTTGATTAGGGCCTGTAGTCTTTGGACACAGGACTTGAGGAGGGCGA
TGTTGCGCCGGCCGTTTAGATCAAAGGGTGAAAACCAATCCACTCGGCCA
TGCTCGAAGGTTTCATCTGTGAGGTCAATGGGACCATCCACCACTGAGGA
TGTGGTGGGGTAGTTGTGTGAGTTAAGAACGGAAACACAAATGCACAGAC
ATGTCACTCACACAGCCACATCATCACTTACTCAGATATAAAAACAGGGC
GAAGATGTAAGGGTTGGAGTGGAATTTTTGGAATGGGGAAGCTTTGGTAG
TCTGCTTCCTGGTGGCGCGTTTCTTCCCCACCCCCGCCCCGTGGTCCCTA
TGGACCAGGGGTGCTGCCTGGTCACTCGAGCCAT
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protein sequence of jgi.p|Nanoce1779_2|605687

>mRNA_9215-protein ID=mRNA_9215-protein|Name=jgi.p|Nanoce1779_2|605687|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MGIKRQLPHFLLFICSFVQYVGSIHITHFRGGTQIPSPRRACGRGQGCHS
PSHDSHRAPWAQGSPSPSEGLFSGSSPPHQAHLLPLLRFSSPTFGQCRSY
ICPP*
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mRNA from alignment at scaffold_33:7939..8672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9215 ID=mRNA_9215|Name=jgi.p|Nanoce1779_2|605687|organism=Nannochloropsis oceanica|type=mRNA|length=734bp|location=Sequence derived from alignment at scaffold_33:7939..8672- (Nannochloropsis oceanica)
CATGGGTATAAAACGACAACTACCGCATTTCCTTCTTTTCATTTGTTCGT
TTGTTCAATACGTGGGCTCCATACATATCACCCACTTTCGTGGAGGAACT
CAGATACCCTCACCTCGTAGGGCGTGCGGACGAGGACAGGGCTGCCATTC
ACCGTCACACGACTCCCATCGTGCACCGTGGGCTCAGGGATCTCCATCTC
CAAGCGAGGGACTCTTTTCAGGTTCTTCCCCCCCCCACCAAGCCCACCTT
TTACCTCTTCTCCGCTTCTCTTCACCCACATTTGGTCAGTGTAGGTCTTA
CATTTGTCCGCCGTGAACCCAGCGAAGGCAGGCACAAAAGCAGGGTAGTG
TTTTTTGATTAGGGCCTGTAGTCTTTGGACACAGGACTTGAGGAGGGCGA
TGTTGCGCCGGCCGTTTAGATCAAAGGGTGAAAACCAATCCACTCGGCCA
TGCTCGAAGGTTTCATCTGTGAGGTCAATGGGACCATCCACCACTGAGGA
TGTGGTGGGGTAGTTGTGTGAGTTAAGAACGGAAACACAAATGCACAGAC
ATGTCACTCACACAGCCACATCATCACTTACTCAGATATAAAAACAGGGC
GAAGATGTAAGGGTTGGAGTGGAATTTTTGGAATGGGGAAGCTTTGGTAG
TCTGCTTCCTGGTGGCGCGTTTCTTCCCCACCCCCGCCCCGTGGTCCCTA
TGGACCAGGGGTGCTGCCTGGTCACTCGAGCCAT
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Coding sequence (CDS) from alignment at scaffold_33:7939..8672-

>mRNA_9215 ID=mRNA_9215|Name=jgi.p|Nanoce1779_2|605687|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_33:7939..8672- (Nannochloropsis oceanica)
ATGGGTATAAAACGACAACTACCGCATTTCCTTCTTTTCATTTGTTCGTT
TGTTCAATACGTGGGCTCCATACATATCACCCACTTTCGTGGAGGAACTC
AGATACCCTCACCTCGTAGGGCGTGCGGACGAGGACAGGGCTGCCATTCA
CCGTCACACGACTCCCATCGTGCACCGTGGGCTCAGGGATCTCCATCTCC
AAGCGAGGGACTCTTTTCAGGTTCTTCCCCCCCCCACCAAGCCCACCTTT
TACCTCTTCTCCGCTTCTCTTCACCCACATTTGGTCAGTGTAGGTCTTAC
ATTTGTCCGCCGTGA
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Synonyms
Publications