jgi.p|Nanoce1779_2|605685, mRNA_9214 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605685
Unique NamemRNA_9214
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1026
Alignment locationscaffold_33:5139..6636 -

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Properties
Property NameValue
TranscriptId605771
TrackFilteredModels2
ProteinId605685
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:5139..6636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605685gene_9214Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605685mRNA_9214-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9214CDS_9214Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9214 ID=mRNA_9214|Name=jgi.p|Nanoce1779_2|605685|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
AGACCCACAGAAATCGTCCCCCGATACTCCTCGGAGATATTAAAACCCTC
CAAACAACGTGGGCGCTGCGAATGTATGGAGCCTCATGGCCACATCTCCG
TCTCCTTGCTGCACCCTCCTGCTCCACATCCTCAAGAGCTCCCACTTAAG
GATAGCCTGCCCCCTAGCCCAACATTTGCTCCATTAACTCTATCGTCGAT
CCCTGTTGAATCTATCTGTCTTTCTCCTCCAACGAGCAGCGTGCCCACCA
CCCGCAGCAGCCAGAATCTTGGCACGCCAGTCCCTACAAATATCAGATAC
AGAAGCCATCCTCAACGAGCCTTGGCATGCTTGTATTGCCGGAGATCCAA
AGTAAAGTGCGACAAGAAACAGCCGAGTTGTACACGATGCGTCCGCCTGG
GCGTAATCTGTGAGCCGCAAAAACGAGGGCAAACGACGGCACCTTTTAAA
TCCTTGGCATCAGCAATCGCCAACTTCCCGCAATCCTCATTTCCCTATCA
CAAGCCCTCTTTGCTCGGCTCGCTGCACTCTGATCCGCCCTCCCAAGCCC
GCTTAACCTTCAATCAGGCCCTGCGTGGGCATCAGCACCCGCAGAGCCAC
TCGCAGAGCCCAGAGCCCAGAGTATTTACCGCACACGCCAAGCCAGCCCG
GTATCCGTGGCACGAGGCAGCAACTGATCCATGTCGTCAGCAGCTACTGC
GGTAAGCCACAGAAACGCTGCCTTAACGCGGCCTTAAAGGGAGAGGGAGA
GCTAGCGGCCTGGTCCATATAGCATGGGTGTGGATTTGAGGCTTTTCGTG
CATGTCACCCATCATCAACCTTTCTACTCACTCTTCACACACATGCACAC
ACACATATACACACGCTATGCAGATACAACCAACTATCTTTGCCATTAGA
TGTACCGCAAACTCTCTCTTCCTCTTCCTCTTCCTCCTTGCCCTCGTTCT
CGTCGTCGTCCTCCTCCTCGTCCTCCTTGTCCTCCTCCTCCTCCTTCCCC
TCGTCCTCGTTTCCTTCTTCCTCCTC
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protein sequence of jgi.p|Nanoce1779_2|605685

>mRNA_9214-protein ID=mRNA_9214-protein|Name=jgi.p|Nanoce1779_2|605685|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MEPHGHISVSLLHPPAPHPQELPLKDSLPPSPTFAPLTLSSIPVESICLS
PPTSSVPTTRSSQNLGTPVPTNIRYRSHPQRALACLYCRRSKVKCDKKQP
SCTRCVRLGVICEPQKRGQTTAPFKSLASAIANFPQSSFPYHKPSLLGSL
HSDPPSQARLTFNQALRGHQHPQSHSQSPEPRVFTAHAKPARYPWHEAAT
DPCRQQLLR*
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mRNA from alignment at scaffold_33:5139..6636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9214 ID=mRNA_9214|Name=jgi.p|Nanoce1779_2|605685|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp|location=Sequence derived from alignment at scaffold_33:5139..6636- (Nannochloropsis oceanica)
AGACCCACAGAAATCGTCCCCCGATACTCCTCGGAGATATTAAAACCCTC
CAAACAACGTGGGCGCTGCGAATGTATGGAGCCTCATGGCCACATCTCCG
TCTCCTTGCTGCACCCTCCTGCTCCACATCCTCAAGAGCTCCCACTTAAG
GATAGCCTGCCCCCTAGCCCAACATTTGCTCCATTAACTCTATCGTCGAT
CCCTGTTGAATCTATCTGTCTTTCTCCTCCAACGAGCAGCGTGCCCACCA
CCCGCAGCAGCCAGAATCTTGGCACGCCAGTCCCTACAAATATCAGATAC
AGAAGCCATCCTCAACGAGCCTTGGCATGCTTGTATTGCCGGAGATCCAA
AGTAAAGTGCGACAAGAAACAGCCGAGTTGTACACGGTAAGTACCCACCA
CTTGAGGCTCACGGCTGGTCCTCGAGTCATCTGTCAGTGTGCGAGACCGC
GGTTTCGTATGCCACAGACCTCAATTAAATATCTCGTCTTATACCCTCAA
CATACGACAGATGCGTCCGCCTGGGCGTAATCTGTGAGCCGCAAAAACGA
GGGCAAACGACGGCACCTTTTAAATCCTTGGCATCAGCAATCGCCAACTT
CCCGCAATCCTCATTTCCCTATCACAAGCCCTCTTTGCTCGGCTCGCTGC
ACTCTGATCCGCCCTCCCAAGCCCGCTTAACCTTCAATCAGGCCCTGCGT
GGGCATCAGCACCCGCAGAGCCACTCGCAGAGCCCAGAGCCCAGAGTATT
TACCGGTGAGTACCCCACCTCACCCCCCTGTCCCTTGCTAAGCCCGCTCG
CCGCATATGATTAGCGTCGTGCCCACTTCGCTGATAAGTGAAGAGCTGAG
TGTATCTGTTAAAGTAGGGCTTTTGACAACCCCCTTGAGGCGCGGGCTCT
GATTCATTTCCTGTCCTCACGTCATTAAGGCCAGTTTGATGTCCCTGTGT
GGATTACATGGATCCATACACAGACCTGCAGGACATGCCTCGGCCCTTGC
GTGTGTCTTTATGACCTTGCCAGACGACATTCTCGGCGCGGGCCTCGGAT
ACGGCGATTTCTCAAATGGTGCTTTCCTTTCTCCGCCCCCACACCCCACA
CAGCACACGCCAAGCCAGCCCGGTATCCGTGGCACGAGGCAGCAACTGAT
CCATGTCGTCAGCAGCTACTGCGGTAAGCCACAGAAACGCTGCCTTAACG
CGGCCTTAAAGGGAGAGGGAGAGCTAGCGGCCTGGTCCATATAGCATGGG
TGTGGATTTGAGGCTTTTCGTGCATGTCACCCATCATCAACCTTTCTACT
CACTCTTCACACACATGCACACACACATATACACACGCTATGCAGATACA
ACCAACTATCTTTGCCATTAGATGTACCGCAAACTCTCTCTTCCTCTTCC
TCTTCCTCCTTGCCCTCGTTCTCGTCGTCGTCCTCCTCCTCGTCCTCCTT
GTCCTCCTCCTCCTCCTTCCCCTCGTCCTCGTTTCCTTCTTCCTCCTC
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Coding sequence (CDS) from alignment at scaffold_33:5139..6636-

>mRNA_9214 ID=mRNA_9214|Name=jgi.p|Nanoce1779_2|605685|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_33:5139..6636- (Nannochloropsis oceanica)
CACACGCCAAGCCAGCCCGGTATCCGTGGCACGAGGCAGCAACTGATCCA
TGTCGTCAGCAGCTACTGCGGTAAATGCGTCCGCCTGGGCGTAATCTGTG
AGCCGCAAAAACGAGGGCAAACGACGGCACCTTTTAAATCCTTGGCATCA
GCAATCGCCAACTTCCCGCAATCCTCATTTCCCTATCACAAGCCCTCTTT
GCTCGGCTCGCTGCACTCTGATCCGCCCTCCCAAGCCCGCTTAACCTTCA
ATCAGGCCCTGCGTGGGCATCAGCACCCGCAGAGCCACTCGCAGAGCCCA
GAGCCCAGAGTATTTACCGATGGAGCCTCATGGCCACATCTCCGTCTCCT
TGCTGCACCCTCCTGCTCCACATCCTCAAGAGCTCCCACTTAAGGATAGC
CTGCCCCCTAGCCCAACATTTGCTCCATTAACTCTATCGTCGATCCCTGT
TGAATCTATCTGTCTTTCTCCTCCAACGAGCAGCGTGCCCACCACCCGCA
GCAGCCAGAATCTTGGCACGCCAGTCCCTACAAATATCAGATACAGAAGC
CATCCTCAACGAGCCTTGGCATGCTTGTATTGCCGGAGATCCAAAGTAAA
GTGCGACAAGAAACAGCCGAGTTGTACACGCACACGCCAAGCCAGCCCGG
TATCCGTGGCACGAGGCAGCAACTGATCCATGTCGTCAGCAGCTACTGCG
GTAAATGCGTCCGCCTGGGCGTAATCTGTGAGCCGCAAAAACGAGGGCAA
ACGACGGCACCTTTTAAATCCTTGGCATCAGCAATCGCCAACTTCCCGCA
ATCCTCATTTCCCTATCACAAGCCCTCTTTGCTCGGCTCGCTGCACTCTG
ATCCGCCCTCCCAAGCCCGCTTAACCTTCAATCAGGCCCTGCGTGGGCAT
CAGCACCCGCAGAGCCACTCGCAGAGCCCAGAGCCCAGAGTATTTACCGA
TGGAGCCTCATGGCCACATCTCCGTCTCCTTGCTGCACCCTCCTGCTCCA
CATCCTCAAGAGCTCCCACTTAAGGATAGCCTGCCCCCTAGCCCAACATT
TGCTCCATTAACTCTATCGTCGATCCCTGTTGAATCTATCTGTCTTTCTC
CTCCAACGAGCAGCGTGCCCACCACCCGCAGCAGCCAGAATCTTGGCACG
CCAGTCCCTACAAATATCAGATACAGAAGCCATCCTCAACGAGCCTTGGC
ATGCTTGTATTGCCGGAGATCCAAAGTAAAGTGCGACAAGAAACAGCCGA
GTTGTACACGCACACGCCAAGCCAGCCCGGTATCCGTGGCACGAGGCAGC
AACTGATCCATGTCGTCAGCAGCTACTGCGGTAAATGCGTCCGCCTGGGC
GTAATCTGTGAGCCGCAAAAACGAGGGCAAACGACGGCACCTTTTAAATC
CTTGGCATCAGCAATCGCCAACTTCCCGCAATCCTCATTTCCCTATCACA
AGCCCTCTTTGCTCGGCTCGCTGCACTCTGATCCGCCCTCCCAAGCCCGC
TTAACCTTCAATCAGGCCCTGCGTGGGCATCAGCACCCGCAGAGCCACTC
GCAGAGCCCAGAGCCCAGAGTATTTACCGATGGAGCCTCATGGCCACATC
TCCGTCTCCTTGCTGCACCCTCCTGCTCCACATCCTCAAGAGCTCCCACT
TAAGGATAGCCTGCCCCCTAGCCCAACATTTGCTCCATTAACTCTATCGT
CGATCCCTGTTGAATCTATCTGTCTTTCTCCTCCAACGAGCAGCGTGCCC
ACCACCCGCAGCAGCCAGAATCTTGGCACGCCAGTCCCTACAAATATCAG
ATACAGAAGCCATCCTCAACGAGCCTTGGCATGCTTGTATTGCCGGAGAT
CCAAAGTAAAGTGCGACAAGAAACAGCCGAGTTGTACACG
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Synonyms
Publications