|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 263956 |
| Track | FilteredModels2 |
| ProteinId | 263870 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_33 | supercontig | scaffold_33:4381..5978 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9213 ID=mRNA_9213|Name=jgi.p|Nanoce1779_2|263870|organism=Nannochloropsis oceanica|type=mRNA|length=1250bp
CCGCCCTCCCAAGCCCGCTTAACCTTCAATCAGGCCCTGCGTGGGCATCA
GCACCCGCAGAGCCACTCGCAGAGCCCAGAGCCCAGAGTATTTACCGCAC
ACGCCAAGCCAGCCCGGTATCCGTGGCACGAGGCAGCAACTGATCCATGT
CGTCAGCAGCTACTGCGGTAAGCCACAGAAACGCTGCCTTAACGCGGCCT
TAAAGGGAGAGGGAGAGCTAGCGGCCTGGTCCATATAGCATGGGTGTGGA
TTTGAGGCTTTTCGTGCATGTCACCCATCATCAACCTTTCTACTCACTCT
TCACACACATGCACACACACATATACACACGCTATGCAGATACAACCAAC
TATCTTTGCCATTAGATGTACCGCAAACTCTCTCTTCCTCTTCCTCTTCC
TCCTTGCCCTCGTTCTCGTCGTCGTCCTCCTCCTCGTCCTCCTTGTCCTC
CTCCTCCTCCTTCCCCTCGTCCTCGTTTCCTTCTTCCTCCTCCTCCTCCT
TGTCCTCCTCTTCTTCCTCGTCGTCCTCCTTTTCCTCTTTCTCCACCCCG
AGTGCTCCTGTCCACAACCGTCTGGTTACGGACAGCTTCTTAGTCCCCCC
CCGCCACCCTCAAGCGCATATCAGCAACATCAGCTGCAGCAGCTGCTACT
CGCCTTCCATCATCTCAAGCAGCACCAGCAGCAGCAGCATCAAAAGGTTC
TGGAAGCGCTGGCCGCCATGCATAATGGTACACCCCTTTCCCCCCTCCTT
CTTCGTCCTCATGGACAAGAGCAACGACCGCAACCAAGACCGCAACCGCA
ACCGCAACTCCGGTCTCAGGCACTGAATGCGCTTGGCTCTACTACAATCG
TTCCTCACCCTTCGTTCTCCTCCACCTCTTCCTCCTCCACGGCAACATCC
ACTGCGTTGCTGCCTTTCCAGAACGCCTCCACATGCACAGACCCAAACAC
AAAGACGACCATCAGCAGCAGCAGCAGCAGCAGCAAGAGCAGCAGCAACA
GGAGGACCAGCCCGTGCTTGCATGCTCTCTCCTTCAACCTTCCTCCATCC
CTCCCTTTTCCTCCTCTACCTCCTTTACTCCACCTCTCTCACCACCCGGC
AGGGTACGTCTCAGACCAGGCGACCCTCACGACGACGTAAATACATCCTT
TGCATCTTACGGGCGTTGTGTGATAGGTAAAATAAGGGGTAGGTTACATC
GTGGAGGACTGTTATTTCGAAGGTTTTGAGAAGGAGGGGGGCTGACGTGT back to topprotein sequence of jgi.p|Nanoce1779_2|263870 >mRNA_9213-protein ID=mRNA_9213-protein|Name=jgi.p|Nanoce1779_2|263870|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MSPIINLSTHSSHTCTHTYTHAMQIQPTIFAIRCTANSLFLFLFLLALVL
VVVLLLVLLVLLLLLPLVLVSFFLLLLLVLLFFLVVLLFLFLHPECSCPQ
PSGYGQLLSPPPPPSSAYQQHQLQQLLLAFHHLKQHQQQQHQKVLEALAA
MHNGTPLSPLLLRPHGQEQRPQPRPQPQPQLRSQALNALGSTTIVPHPSF
SSTSSSSTATSTALLPFQNASTCTDPNTKTTISSSSSSSKSSSNRRTSPC
LHALSFNLPPSLPFPPLPPLLHLSHHPAGYVSDQATLTTT* back to topmRNA from alignment at scaffold_33:4381..5978- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9213 ID=mRNA_9213|Name=jgi.p|Nanoce1779_2|263870|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp|location=Sequence derived from alignment at scaffold_33:4381..5978- (Nannochloropsis oceanica)
CCGCCCTCCCAAGCCCGCTTAACCTTCAATCAGGCCCTGCGTGGGCATCA
GCACCCGCAGAGCCACTCGCAGAGCCCAGAGCCCAGAGTATTTACCGGTG
AGTACCCCACCTCACCCCCCTGTCCCTTGCTAAGCCCGCTCGCCGCATAT
GATTAGCGTCGTGCCCACTTCGCTGATAAGTGAAGAGCTGAGTGTATCTG
TTAAAGTAGGGCTTTTGACAACCCCCTTGAGGCGCGGGCTCTGATTCATT
TCCTGTCCTCACGTCATTAAGGCCAGTTTGATGTCCCTGTGTGGATTACA
TGGATCCATACACAGACCTGCAGGACATGCCTCGGCCCTTGCGTGTGTCT
TTATGACCTTGCCAGACGACATTCTCGGCGCGGGCCTCGGATACGGCGAT
TTCTCAAATGGTGCTTTCCTTTCTCCGCCCCCACACCCCACACAGCACAC
GCCAAGCCAGCCCGGTATCCGTGGCACGAGGCAGCAACTGATCCATGTCG
TCAGCAGCTACTGCGGTAAGCCACAGAAACGCTGCCTTAACGCGGCCTTA
AAGGGAGAGGGAGAGCTAGCGGCCTGGTCCATATAGCATGGGTGTGGATT
TGAGGCTTTTCGTGCATGTCACCCATCATCAACCTTTCTACTCACTCTTC
ACACACATGCACACACACATATACACACGCTATGCAGATACAACCAACTA
TCTTTGCCATTAGATGTACCGCAAACTCTCTCTTCCTCTTCCTCTTCCTC
CTTGCCCTCGTTCTCGTCGTCGTCCTCCTCCTCGTCCTCCTTGTCCTCCT
CCTCCTCCTTCCCCTCGTCCTCGTTTCCTTCTTCCTCCTCCTCCTCCTTG
TCCTCCTCTTCTTCCTCGTCGTCCTCCTTTTCCTCTTTCTCCACCCCGAG
TGCTCCTGTCCACAACCGTCTGGTTACGGACAGCTTCTTAGTCCCCCCCC
GCCACCCTCAAGCGCATATCAGCAACATCAGCTGCAGCAGCTGCTACTCG
CCTTCCATCATCTCAAGCAGCACCAGCAGCAGCAGCATCAAAAGGTTCTG
GAAGCGCTGGCCGCCATGCATAATGGTACACCCCTTTCCCCCCTCCTTCT
TCGTCCTCATGGACAAGAGCAACGACCGCAACCAAGACCGCAACCGCAAC
CGCAACTCCGGTCTCAGGCACTGAATGCGCTTGGCTCTACTACAATCGTT
CCTCACCCTTCGTTCTCCTCCACCTCTTCCTCCTCCACGGCAACATCCAC
TGCGTTGCTGCCTTTCCAGAACGCCTCCACATGCACAGACCCAAACACAA
AGACGACCATCAGCAGCAGCAGCAGCAGCAGCAAGAGCAGCAGCAACAGG
AGGACCAGCCCGTGCTTGCATGCTCTCTCCTTCAACCTTCCTCCATCCCT
CCCTTTTCCTCCTCTACCTCCTTTACTCCACCTCTCTCACCACCCGGCAG
GGTACGTCTCAGACCAGGCGACCCTCACGACGACGTAAATACATCCTTTG
CATCTTACGGGCGTTGTGTGATAGGTAAAATAAGGGGTAGGTTACATCGT
GGAGGACTGTTATTTCGAAGGTTTTGAGAAGGAGGGGGGCTGACGTGT back to topCoding sequence (CDS) from alignment at scaffold_33:4381..5978- >mRNA_9213 ID=mRNA_9213|Name=jgi.p|Nanoce1779_2|263870|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_33:4381..5978- (Nannochloropsis oceanica)
ATGTCACCCATCATCAACCTTTCTACTCACTCTTCACACACATGCACACA
CACATATACACACGCTATGCAGATACAACCAACTATCTTTGCCATTAGAT
GTACCGCAAACTCTCTCTTCCTCTTCCTCTTCCTCCTTGCCCTCGTTCTC
GTCGTCGTCCTCCTCCTCGTCCTCCTTGTCCTCCTCCTCCTCCTTCCCCT
CGTCCTCGTTTCCTTCTTCCTCCTCCTCCTCCTTGTCCTCCTCTTCTTCC
TCGTCGTCCTCCTTTTCCTCTTTCTCCACCCCGAGTGCTCCTGTCCACAA
CCGTCTGGTTACGGACAGCTTCTTAGTCCCCCCCCGCCACCCTCAAGCGC
ATATCAGCAACATCAGCTGCAGCAGCTGCTACTCGCCTTCCATCATCTCA
AGCAGCACCAGCAGCAGCAGCATCAAAAGGTTCTGGAAGCGCTGGCCGCC
ATGCATAATGGTACACCCCTTTCCCCCCTCCTTCTTCGTCCTCATGGACA
AGAGCAACGACCGCAACCAAGACCGCAACCGCAACCGCAACTCCGGTCTC
AGGCACTGAATGCGCTTGGCTCTACTACAATCGTTCCTCACCCTTCGTTC
TCCTCCACCTCTTCCTCCTCCACGGCAACATCCACTGCGTTGCTGCCTTT
CCAGAACGCCTCCACATGCACAGACCCAAACACAAAGACGACCATCAGCA
GCAGCAGCAGCAGCAGCAAGAGCAGCAGCAACAGGAGGACCAGCCCGTGC
TTGCATGCTCTCTCCTTCAACCTTCCTCCATCCCTCCCTTTTCCTCCTCT
ACCTCCTTTACTCCACCTCTCTCACCACCCGGCAGGGTACGTCTCAGACC
AGGCGACCCTCACGACGACGTAA back to top
|