jgi.p|Nanoce1779_2|642376, mRNA_9212 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|642376
Unique Name	mRNA_9212
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	705
Alignment location	scaffold_33:87..2507 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	642462
Track	FilteredModels2
ProteinId	642376

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:87..2507 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642376	gene_9212	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642376	mRNA_9212-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9212	CDS_9212	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:87..2507+
coding sequence from alignment at scaffold_33:87..2507+

mRNA sequence

>mRNA_9212 ID=mRNA_9212|Name=jgi.p|Nanoce1779_2|642376|organism=Nannochloropsis oceanica|type=mRNA|length=705bp
AACATCCTTCTCCGCGAGCCAGAAGATGACGTGCACGTCAAACTCGCTGA
TTTCGGCCTCGCCCATCGGCTGCTCGGCATGGAAGCACTCACCACCATCT
GCGGTTCTCCGGGTTATATGGCTCCGGAGATTCTGAGCGAAGCCCCATAC
AATGAAAAGGCCGATGTATGGGCCGTGGGAACGATTCTCTTCTGTCTATT
AGGAGGCTATAATCCTTTCGAGGGGCGGTCCACAGTCATAACTATCGCCC
GCATCAAGGCTGGGAAGTATTCGTTCCCCTCCCCCTACTTCGATCACGTC
TCCGAGGATGCCAAAGACCTCATCCGCTGCATGCTTGTGGTCAATCAAGA
GAAGCGTCTGTCGGCCCGCGCCTGCTTAGAGCACAAATGGTTTGCCTTGG
CCGAGGCTTCCCTGCAAGGGCACGACCTGACCGTCAGTAAGGACAAAATG
CGGGAGGTGCTTCGAGGCAAGCGAGCGTTCAAGGCGGCTGGCAACGCTGT
GATCATGATGAATCGTCTCAAGATGTTCAGCACGGGCGAGAGCCTTGCCT
CGGGGAGGAAAGATATCTCCCTCACCAAAAGCCCGTCGGTCGCCTCCACC
GTCTCCCTGGACAGCAGCGGGCATTCATCCAATCCCATCCTGGAGGGGGC
AACCACCAAAAACCTGCACTCGATCTCGCCTCGGGAGGAGGTGGTAGTGG
AGTGA

protein sequence of jgi.p|Nanoce1779_2|642376

>mRNA_9212-protein ID=mRNA_9212-protein|Name=jgi.p|Nanoce1779_2|642376|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
NILLREPEDDVHVKLADFGLAHRLLGMEALTTICGSPGYMAPEILSEAPY
NEKADVWAVGTILFCLLGGYNPFEGRSTVITIARIKAGKYSFPSPYFDHV
SEDAKDLIRCMLVVNQEKRLSARACLEHKWFALAEASLQGHDLTVSKDKM
REVLRGKRAFKAAGNAVIMMNRLKMFSTGESLASGRKDISLTKSPSVAST
VSLDSSGHSSNPILEGATTKNLHSISPREEVVVE*

mRNA from alignment at scaffold_33:87..2507+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9212 ID=mRNA_9212|Name=jgi.p|Nanoce1779_2|642376|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp|location=Sequence derived from alignment at scaffold_33:87..2507+ (Nannochloropsis oceanica)
AACATCCTTCTCCGCGAGCCAGAAGATGACGTGCACGTCAAACTCGCTGA
TTTCGGCCTCGCCCATCGGCTGCTCGGTAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAAGTATGTAATCAGGCTCA
ACAGGAGGGCGAGAGGGAGGGAGGGAGGGAAGGAAGGTGTATTATCAGAT
CAGCAGAATAATAATATGTCAATAAATGATCCCTTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTGCTTAGGCATGGAAGCACTCACCACCATCTGCG
GTTCTCCGGGTTATATGGCTCCGGAGATTCTGAGCGAAGCCCCATACAAT
GAAAAGGCCGATGGTACGTCCCTCCCTCCCTCCCTTCATTATTGGCTGTA
AGGAGGAGGCGTGTCCAAGATTATGTTGATTCAGTTGTTTTACCGTCTGA
CATGACACAAGAGAGCCGATGAGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAAGGGAGGGAAGGGAGGGAGGGAGGAAAGAAGAAGAGAGGGGAGGATGG
TTGCACAACACATTTTATGCTCACCTACCCCTCCCCATCTCCCTCCCTCC
CTCCCTCCCTTCCTTCCTTCCTCCCTGCCTCCCTCGATGGGCAGTATGGG
CCGTGGGAACGATTCTCTTCTGTCTATTAGGAGGCTATAATCCTTTGTGA
GTAGTCTTAGGGATGGAGGGAGGGAGGGGTAGACAAGCCTTCACTCTATT
GCGCGTTTCTCCCTCTCGTTTCTTCCCTCCTCATCACATATCCGTCTCCT
CAAGCCCGTCATTCCGACACCCGTGTTATCTCGTCCTTCATTTCCATTCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTC
CCTTCCTCCCTCAGCGAGGGGCGGTCCACAGTCATAACTATCGCCCGCAT
CAAGGCTGGGAAGTATTCGTTCCCCTCCCCCTACTTCGATCACGTCTCCG
AGGATGCCAAAGGTAAGGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCTCC
CTCCCTCCCTCCCTCTCCTCCCTCCCTCCATTCCCACCATATCTTCGTCT
CCTCCAACCCGTCATTTGAAAACCCATATTCCCCATACACTTCCCACTCA
TATTCTTCCACCGACCTCGACCTCCGTCCCTCCCTCCGTCCCTCCCTCCA
CCCAGACCTCATCCGCTGCATGCTTGTGGTCAATCAAGAGAAGCGTCTGT
CGGCCCGCGCCTGCTTAGAGCACAAATGGTTTGCCTTGGCCGAGGCTTCC
CTGCAAGGGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGGAGGGAGTGGAGGGAGTGAGGGAGGGGAGGGA
GGGAGGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGGAGGGAGTGAGGGA
GGGAGGGAGGGAGGAAAAGAGAGAGAAAGCGAACCAAAGCTACAATTACA
CCGCACTAAGCATCCCTTTCCCATTTCTCCCCCTCCTTCCTCCCTCCCTC
CCTCCCTCCCTCCAGCACGACCTGACCGTCAGTAAGGACAAAATGCGGGA
GGTGCTTCGAGGCAAGCGAGCGTTCAAGGTGGGCAGACAGACAGAGCCCG
CCCTACTACCCTTCCTCCAACCCTTTCTCCCTCCCTCCCTCCCTTCCCCC
CGCCCTCGTTCTTTCAGTCTACTTTTTTTTCATTCCATGTCTTCATTTGT
CTTCCCTCCCCATCACATGTCCGCCTCCTCAAGCCCATCATTCTGAAACT
CATATCTCCCATGCACTTCCCCGAAACATTTCCCTCGCTCCCTTCCTCCT
TCCTTCCCTCCCTCCCTCCCTCCCTTCTTCCCTTCCTCCCTCCCTCCCTC
AGGCGGCTGGCAACGCTGTGATCATGATGAATCGTCTCAAGATGTTCAGC
ACGGGCGAGAGCCTTGCCTCGGGGAGGAAAGGTAGGGAGGAAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAAATGTGACAGCCCTGTTT
AACGTTGTTGTGTTCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCCATCATGATTCCTTCTCCTCCAGCCCGTCGTCCTGACT
CCCATGCCATATCTCCCATCTGCTCCCCCCCCCAAATCACGCTCTCCTAT
CCCCCTCCCTCCCTCCCTCCCCCCCTAGATATCTCCCTCACCAAAAGCCC
GTCGGTCGCCTCCACCGTCTCCCTGGACAGCAGCGGGCATTCATCCAATC
CCATCCTGGAGGGGGCAACCACCAAAAACCTGCACTCGATCTCGCCTCGG
GAGGAGGTGGTAGTGGAGTGA

Coding sequence (CDS) from alignment at scaffold_33:87..2507+

>mRNA_9212 ID=mRNA_9212|Name=jgi.p|Nanoce1779_2|642376|organism=Nannochloropsis oceanica|type=CDS|length=5640bp|location=Sequence derived from alignment at scaffold_33:87..2507+ (Nannochloropsis oceanica)
AACATCCTTCTCCGCGAGCCAGAAGATGACGTGCACGTCAAACTCGCTGA
TTTCGGCCTCGCCCATCGGCTGCTCGGCATGGAAGCACTCACCACCATCT
GCGGTTCTCCGGGTTATATGGCTCCGGAGATTCTGAGCGAAGCCCCATAC
AATGAAAAGGCCGATGTATGGGCCGTGGGAACGATTCTCTTCTGTCTATT
AGGAGGCTATAATCCTTTCGAGGGGCGGTCCACAGTCATAACTATCGCCC
GCATCAAGGCTGGGAAGTATTCGTTCCCCTCCCCCTACTTCGATCACGTC
TCCGAGGATGCCAAAGACCTCATCCGCTGCATGCTTGTGGTCAATCAAGA
GAAGCGTCTGTCGGCCCGCGCCTGCTTAGAGCACAAATGGTTTGCCTTGG
CCGAGGCTTCCCTGCAAGGGCACGACCTGACCGTCAGTAAGGACAAAATG
CGGGAGGTGCTTCGAGGCAAGCGAGCGTTCAAGGCGGCTGGCAACGCTGT
GATCATGATGAATCGTCTCAAGATGTTCAGCACGGGCGAGAGCCTTGCCT
CGGGGAGGAAAGATATCTCCCTCACCAAAAGCCCGTCGGTCGCCTCCACC
GTCTCCCTGGACAGCAGCGGGCATTCATCCAATCCCATCCTGGAGGGGGC
AACCACCAAAAACCTGCACTCGATCTCGCCTCGGGAGGAGGTGGTAGTGG
AGTGAAACATCCTTCTCCGCGAGCCAGAAGATGACGTGCACGTCAAACTC
GCTGATTTCGGCCTCGCCCATCGGCTGCTCGGCATGGAAGCACTCACCAC
CATCTGCGGTTCTCCGGGTTATATGGCTCCGGAGATTCTGAGCGAAGCCC
CATACAATGAAAAGGCCGATGTATGGGCCGTGGGAACGATTCTCTTCTGT
CTATTAGGAGGCTATAATCCTTTCGAGGGGCGGTCCACAGTCATAACTAT
CGCCCGCATCAAGGCTGGGAAGTATTCGTTCCCCTCCCCCTACTTCGATC
ACGTCTCCGAGGATGCCAAAGACCTCATCCGCTGCATGCTTGTGGTCAAT
CAAGAGAAGCGTCTGTCGGCCCGCGCCTGCTTAGAGCACAAATGGTTTGC
CTTGGCCGAGGCTTCCCTGCAAGGGCACGACCTGACCGTCAGTAAGGACA
AAATGCGGGAGGTGCTTCGAGGCAAGCGAGCGTTCAAGGCGGCTGGCAAC
GCTGTGATCATGATGAATCGTCTCAAGATGTTCAGCACGGGCGAGAGCCT
TGCCTCGGGGAGGAAAGATATCTCCCTCACCAAAAGCCCGTCGGTCGCCT
CCACCGTCTCCCTGGACAGCAGCGGGCATTCATCCAATCCCATCCTGGAG
GGGGCAACCACCAAAAACCTGCACTCGATCTCGCCTCGGGAGGAGGTGGT
AGTGGAGTGAAACATCCTTCTCCGCGAGCCAGAAGATGACGTGCACGTCA
AACTCGCTGATTTCGGCCTCGCCCATCGGCTGCTCGGCATGGAAGCACTC
ACCACCATCTGCGGTTCTCCGGGTTATATGGCTCCGGAGATTCTGAGCGA
AGCCCCATACAATGAAAAGGCCGATGTATGGGCCGTGGGAACGATTCTCT
TCTGTCTATTAGGAGGCTATAATCCTTTCGAGGGGCGGTCCACAGTCATA
ACTATCGCCCGCATCAAGGCTGGGAAGTATTCGTTCCCCTCCCCCTACTT
CGATCACGTCTCCGAGGATGCCAAAGACCTCATCCGCTGCATGCTTGTGG
TCAATCAAGAGAAGCGTCTGTCGGCCCGCGCCTGCTTAGAGCACAAATGG
TTTGCCTTGGCCGAGGCTTCCCTGCAAGGGCACGACCTGACCGTCAGTAA
GGACAAAATGCGGGAGGTGCTTCGAGGCAAGCGAGCGTTCAAGGCGGCTG
GCAACGCTGTGATCATGATGAATCGTCTCAAGATGTTCAGCACGGGCGAG
AGCCTTGCCTCGGGGAGGAAAGATATCTCCCTCACCAAAAGCCCGTCGGT
CGCCTCCACCGTCTCCCTGGACAGCAGCGGGCATTCATCCAATCCCATCC
TGGAGGGGGCAACCACCAAAAACCTGCACTCGATCTCGCCTCGGGAGGAG
GTGGTAGTGGAGTGAAACATCCTTCTCCGCGAGCCAGAAGATGACGTGCA
CGTCAAACTCGCTGATTTCGGCCTCGCCCATCGGCTGCTCGGCATGGAAG
CACTCACCACCATCTGCGGTTCTCCGGGTTATATGGCTCCGGAGATTCTG
AGCGAAGCCCCATACAATGAAAAGGCCGATGTATGGGCCGTGGGAACGAT
TCTCTTCTGTCTATTAGGAGGCTATAATCCTTTCGAGGGGCGGTCCACAG
TCATAACTATCGCCCGCATCAAGGCTGGGAAGTATTCGTTCCCCTCCCCC
TACTTCGATCACGTCTCCGAGGATGCCAAAGACCTCATCCGCTGCATGCT
TGTGGTCAATCAAGAGAAGCGTCTGTCGGCCCGCGCCTGCTTAGAGCACA
AATGGTTTGCCTTGGCCGAGGCTTCCCTGCAAGGGCACGACCTGACCGTC
AGTAAGGACAAAATGCGGGAGGTGCTTCGAGGCAAGCGAGCGTTCAAGGC
GGCTGGCAACGCTGTGATCATGATGAATCGTCTCAAGATGTTCAGCACGG
GCGAGAGCCTTGCCTCGGGGAGGAAAGATATCTCCCTCACCAAAAGCCCG
TCGGTCGCCTCCACCGTCTCCCTGGACAGCAGCGGGCATTCATCCAATCC
CATCCTGGAGGGGGCAACCACCAAAAACCTGCACTCGATCTCGCCTCGGG
AGGAGGTGGTAGTGGAGTGAAACATCCTTCTCCGCGAGCCAGAAGATGAC
GTGCACGTCAAACTCGCTGATTTCGGCCTCGCCCATCGGCTGCTCGGCAT
GGAAGCACTCACCACCATCTGCGGTTCTCCGGGTTATATGGCTCCGGAGA
TTCTGAGCGAAGCCCCATACAATGAAAAGGCCGATGTATGGGCCGTGGGA
ACGATTCTCTTCTGTCTATTAGGAGGCTATAATCCTTTCGAGGGGCGGTC
CACAGTCATAACTATCGCCCGCATCAAGGCTGGGAAGTATTCGTTCCCCT
CCCCCTACTTCGATCACGTCTCCGAGGATGCCAAAGACCTCATCCGCTGC
ATGCTTGTGGTCAATCAAGAGAAGCGTCTGTCGGCCCGCGCCTGCTTAGA
GCACAAATGGTTTGCCTTGGCCGAGGCTTCCCTGCAAGGGCACGACCTGA
CCGTCAGTAAGGACAAAATGCGGGAGGTGCTTCGAGGCAAGCGAGCGTTC
AAGGCGGCTGGCAACGCTGTGATCATGATGAATCGTCTCAAGATGTTCAG
CACGGGCGAGAGCCTTGCCTCGGGGAGGAAAGATATCTCCCTCACCAAAA
GCCCGTCGGTCGCCTCCACCGTCTCCCTGGACAGCAGCGGGCATTCATCC
AATCCCATCCTGGAGGGGGCAACCACCAAAAACCTGCACTCGATCTCGCC
TCGGGAGGAGGTGGTAGTGGAGTGAAACATCCTTCTCCGCGAGCCAGAAG
ATGACGTGCACGTCAAACTCGCTGATTTCGGCCTCGCCCATCGGCTGCTC
GGCATGGAAGCACTCACCACCATCTGCGGTTCTCCGGGTTATATGGCTCC
GGAGATTCTGAGCGAAGCCCCATACAATGAAAAGGCCGATGTATGGGCCG
TGGGAACGATTCTCTTCTGTCTATTAGGAGGCTATAATCCTTTCGAGGGG
CGGTCCACAGTCATAACTATCGCCCGCATCAAGGCTGGGAAGTATTCGTT
CCCCTCCCCCTACTTCGATCACGTCTCCGAGGATGCCAAAGACCTCATCC
GCTGCATGCTTGTGGTCAATCAAGAGAAGCGTCTGTCGGCCCGCGCCTGC
TTAGAGCACAAATGGTTTGCCTTGGCCGAGGCTTCCCTGCAAGGGCACGA
CCTGACCGTCAGTAAGGACAAAATGCGGGAGGTGCTTCGAGGCAAGCGAG
CGTTCAAGGCGGCTGGCAACGCTGTGATCATGATGAATCGTCTCAAGATG
TTCAGCACGGGCGAGAGCCTTGCCTCGGGGAGGAAAGATATCTCCCTCAC
CAAAAGCCCGTCGGTCGCCTCCACCGTCTCCCTGGACAGCAGCGGGCATT
CATCCAATCCCATCCTGGAGGGGGCAACCACCAAAAACCTGCACTCGATC
TCGCCTCGGGAGGAGGTGGTAGTGGAGTGAAACATCCTTCTCCGCGAGCC
AGAAGATGACGTGCACGTCAAACTCGCTGATTTCGGCCTCGCCCATCGGC
TGCTCGGCATGGAAGCACTCACCACCATCTGCGGTTCTCCGGGTTATATG
GCTCCGGAGATTCTGAGCGAAGCCCCATACAATGAAAAGGCCGATGTATG
GGCCGTGGGAACGATTCTCTTCTGTCTATTAGGAGGCTATAATCCTTTCG
AGGGGCGGTCCACAGTCATAACTATCGCCCGCATCAAGGCTGGGAAGTAT
TCGTTCCCCTCCCCCTACTTCGATCACGTCTCCGAGGATGCCAAAGACCT
CATCCGCTGCATGCTTGTGGTCAATCAAGAGAAGCGTCTGTCGGCCCGCG
CCTGCTTAGAGCACAAATGGTTTGCCTTGGCCGAGGCTTCCCTGCAAGGG
CACGACCTGACCGTCAGTAAGGACAAAATGCGGGAGGTGCTTCGAGGCAA
GCGAGCGTTCAAGGCGGCTGGCAACGCTGTGATCATGATGAATCGTCTCA
AGATGTTCAGCACGGGCGAGAGCCTTGCCTCGGGGAGGAAAGATATCTCC
CTCACCAAAAGCCCGTCGGTCGCCTCCACCGTCTCCCTGGACAGCAGCGG
GCATTCATCCAATCCCATCCTGGAGGGGGCAACCACCAAAAACCTGCACT
CGATCTCGCCTCGGGAGGAGGTGGTAGTGGAGTGAAACATCCTTCTCCGC
GAGCCAGAAGATGACGTGCACGTCAAACTCGCTGATTTCGGCCTCGCCCA
TCGGCTGCTCGGCATGGAAGCACTCACCACCATCTGCGGTTCTCCGGGTT
ATATGGCTCCGGAGATTCTGAGCGAAGCCCCATACAATGAAAAGGCCGAT
GTATGGGCCGTGGGAACGATTCTCTTCTGTCTATTAGGAGGCTATAATCC
TTTCGAGGGGCGGTCCACAGTCATAACTATCGCCCGCATCAAGGCTGGGA
AGTATTCGTTCCCCTCCCCCTACTTCGATCACGTCTCCGAGGATGCCAAA
GACCTCATCCGCTGCATGCTTGTGGTCAATCAAGAGAAGCGTCTGTCGGC
CCGCGCCTGCTTAGAGCACAAATGGTTTGCCTTGGCCGAGGCTTCCCTGC
AAGGGCACGACCTGACCGTCAGTAAGGACAAAATGCGGGAGGTGCTTCGA
GGCAAGCGAGCGTTCAAGGCGGCTGGCAACGCTGTGATCATGATGAATCG
TCTCAAGATGTTCAGCACGGGCGAGAGCCTTGCCTCGGGGAGGAAAGATA
TCTCCCTCACCAAAAGCCCGTCGGTCGCCTCCACCGTCTCCCTGGACAGC
AGCGGGCATTCATCCAATCCCATCCTGGAGGGGGCAACCACCAAAAACCT
GCACTCGATCTCGCCTCGGGAGGAGGTGGTAGTGGAGTGA

Synonyms

Publications