jgi.p|Nanoce1779_2|606890, mRNA_9208 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606890
Unique NamemRNA_9208
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length781
Alignment locationscaffold_36:223570..224602 +

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Properties
Property NameValue
TranscriptId606976
TrackFilteredModels2
ProteinId606890
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:223570..224602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606890gene_9208Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606890mRNA_9208-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9208CDS_9208Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9208 ID=mRNA_9208|Name=jgi.p|Nanoce1779_2|606890|organism=Nannochloropsis oceanica|type=mRNA|length=781bp
AGGCACGCTCCCAAAACTACCATGGCGGACCCTGCTGTACTCGAAGCTGT
TTCCCGTGGGAACCCGGTGGTGTTCATGGACATTTCGATCGCTACACGGC
CTGCAGGCCGGATTAAGATGGAACTTTTCAGAGACGTGGCACCCAAGACT
GTGGAGAATTTCCGACAATTTTGCACGGGGGAATATAGGGAGAGTGGCTT
GCCGATCGGCTACAAGGGGTCGCCTTTTCATCGGGTGATTAAGGATTTTA
TGATTCAGGGCGGGGATTTTGTGAAGGGCGACGGCACGGGTTTGAAATCC
ATTTATGGCGACAAATTTGCAGACGAAGGCTTCGACCTGCGGCATACGGG
TCCCGGCCTCCTGAGCATGGCCAACAGCGGCCCCAACAGTAATGGGTGTC
AGTTTTTCATCACCTGCAACAAGTGCGAGTGGCTGGATGGGAAGCACGTG
GTTTTTGGAAAGGTGCTCGACGCGGCGTCCATGTTGACCGTTCGGAAGAT
CGAAAACACAGACGTAAAGCGCCTCAAGGTTGAGGTGGTCGAGTGCGGAG
AGCTGTAAGTAAGCATAGACATGACCTTGACGGCCAGGAGAAAATGACTG
TACAATAACAATCGCGACAACATTGACTCTAGTGAGTTTTTGGTAACGGT
TTGTGAAATGGCTAAAGAGGGTAGGGGGATGCGGGTACGTTCATCGAGGA
GAAGGAGGAGGAGGAGGAGGAGGGCGGAGGGAAGGAGGAGAAAGAAATGC
CATGAAATGATGCACAAATGTTAGAAGGGAC
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protein sequence of jgi.p|Nanoce1779_2|606890

>mRNA_9208-protein ID=mRNA_9208-protein|Name=jgi.p|Nanoce1779_2|606890|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MADPAVLEAVSRGNPVVFMDISIATRPAGRIKMELFRDVAPKTVENFRQF
CTGEYRESGLPIGYKGSPFHRVIKDFMIQGGDFVKGDGTGLKSIYGDKFA
DEGFDLRHTGPGLLSMANSGPNSNGCQFFITCNKCEWLDGKHVVFGKVLD
AASMLTVRKIENTDVKRLKVEVVECGEL*
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mRNA from alignment at scaffold_36:223570..224602+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9208 ID=mRNA_9208|Name=jgi.p|Nanoce1779_2|606890|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp|location=Sequence derived from alignment at scaffold_36:223570..224602+ (Nannochloropsis oceanica)
AGGCACGCTCCCAAAACTACCATGGCGGACCCTGCTGTACTCGAAGCTGT
TTCCCGTGGGAACCCGGTGGTGTTCATGGACATTTCGATCGCTACACGGC
CTGCAGGCCGGATTAAGATGGAACTTTTCAGAGACGTGGCACCCAAGACT
GTGGAGAATTTCCGACAATTTTGCACGGGGGAATATAGGGAGAGTGGCTT
GCCGATCGGCTACAAGGGGTCGCCTTTTCATCGGGTGATTAAGGATTTTA
TGATTCAGGTAGGCTTTTATTCATCATCATTTTCTCTGTGTCGGTCCATT
TACTTCATATATGTATTCATTTCACTTTTTTATTTATCATTCCTTCATTA
TTTATGTTGTTCATTACTACTACAGGTGGAGATTTTATGAAGGTCAACGA
CACGCATTGGAAGCTTTCTAGGAGAACACGTGCGCAAATGTTGGACTTTC
TTTCGTCTAACCCGTCGTCCCTCTCTCCCTCCCTCCCTCTCTCCCTCCCC
CTCGGTCCAGGGCGGGGATTTTGTGAAGGGCGACGGCACGGGTTTGAAAT
CCATTTATGGCGACAAATTTGCAGACGAAGGCTTCGACCTGCGGCATACG
GGTCCCGGCCTCCTGAGCATGGCCAACAGCGGCCCCAACAGTAATGGGTG
TCAGTTTTTCATCACCTGCAACAAGTGCGAGTGGCTGGATGGGAAGCACG
TGGTTTTTGGAAAGGTGCTCGACGCGGCGTCCATGTTGACCGTTCGGAAG
ATCGAAAACACAGACGTAAAGCGCCTCAAGGTTGAGGTGGTCGAGTGCGG
AGAGCTGTAAGTAAGCATAGACATGACCTTGACGGCCAGGAGAAAATGAC
TGTACAATAACAATCGCGACAACATTGACTCTAGTGAGTTTTTGGTAACG
GTTTGTGAAATGGCTAAAGAGGGTAGGGGGATGCGGGTACGTTCATCGAG
GAGAAGGAGGAGGAGGAGGAGGAGGGCGGAGGGAAGGAGGAGAAAGAAAT
GCCATGAAATGATGCACAAATGTTAGAAGGGAC
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Coding sequence (CDS) from alignment at scaffold_36:223570..224602+

>mRNA_9208 ID=mRNA_9208|Name=jgi.p|Nanoce1779_2|606890|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_36:223570..224602+ (Nannochloropsis oceanica)
ATGGCGGACCCTGCTGTACTCGAAGCTGTTTCCCGTGGGAACCCGGTGGT
GTTCATGGACATTTCGATCGCTACACGGCCTGCAGGCCGGATTAAGATGG
AACTTTTCAGAGACGTGGCACCCAAGACTGTGGAGAATTTCCGACAATTT
TGCACGGGGGAATATAGGGAGAGTGGCTTGCCGATCGGCTACAAGGGGTC
GCCTTTTCATCGGGTGATTAAGGATTTTATGATTCAGGGCGGGGATTTTG
TGAAGGGCGACGGCACGGGTTTGAAATCCATTTATGGCGACAAATTTGCA
GACGAAGGCTTCGACCTGCGGCATACGGGTCCCGGCCTCCTGAGCATGGC
CAACAGCGGCCCCAACAGTAATGGGTGTCAGTTTTTCATCACCTGCAACA
AGTGCGAGTGGCTGGATGGGAAGCACGTGGTTTTTGGAAAGGTGCTCGAC
GCGGCGTCCATGTTGACCGTTCGGAAGATCGAAAACACAGACGTAAAGCG
CCTCAAGGTTGAGGTGGTCGAGTGCGGAGAGCTGTAAATGGCGGACCCTG
CTGTACTCGAAGCTGTTTCCCGTGGGAACCCGGTGGTGTTCATGGACATT
TCGATCGCTACACGGCCTGCAGGCCGGATTAAGATGGAACTTTTCAGAGA
CGTGGCACCCAAGACTGTGGAGAATTTCCGACAATTTTGCACGGGGGAAT
ATAGGGAGAGTGGCTTGCCGATCGGCTACAAGGGGTCGCCTTTTCATCGG
GTGATTAAGGATTTTATGATTCAGGGCGGGGATTTTGTGAAGGGCGACGG
CACGGGTTTGAAATCCATTTATGGCGACAAATTTGCAGACGAAGGCTTCG
ACCTGCGGCATACGGGTCCCGGCCTCCTGAGCATGGCCAACAGCGGCCCC
AACAGTAATGGGTGTCAGTTTTTCATCACCTGCAACAAGTGCGAGTGGCT
GGATGGGAAGCACGTGGTTTTTGGAAAGGTGCTCGACGCGGCGTCCATGT
TGACCGTTCGGAAGATCGAAAACACAGACGTAAAGCGCCTCAAGGTTGAG
GTGGTCGAGTGCGGAGAGCTGTAA
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Synonyms
Publications