jgi.p|Nanoce1779_2|606886, mRNA_9206 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606886
Unique Name	mRNA_9206
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1594
Alignment location	scaffold_36:221661..223254 +

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Properties


Property Name	Value
TranscriptId	606972
Track	FilteredModels2
ProteinId	606886

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:221661..223254 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606886	gene_9206	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606886	mRNA_9206-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9206	CDS_9206	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:221661..223254+
coding sequence from alignment at scaffold_36:221661..223254+

mRNA sequence

>mRNA_9206 ID=mRNA_9206|Name=jgi.p|Nanoce1779_2|606886|organism=Nannochloropsis oceanica|type=mRNA|length=1594bp
CTCTCATTCTTGTCCTTCTTGTTCTTCTTCTTGTTCTTCTTCCCCTCTTG
CTCCTTTCCCCTGTCCCTCTTCTCCTTCTCCTCCTGATATACTCCCCTGG
CCCTATGTGTTTCATTTGCTTTTGCTTTCCTCGCGCCAGGTATCCACGAC
GAGCATTCTACAATCTTTCCTGTCTAGCTACCTGGCTTGCCCTCGTGTGT
AAGTCCTGTGACGTAAGGTTGCATGCGATAGTTCTATCGGAATGTAGGAT
AACGGCAGAAAACAGAACTAACTACCCACTGCTCTCCCTCCCTCTTCCCC
CCTCCCTCTCTTCCTCTGACAAATTGGCAATGCTCAATAGGATTTCCCCC
TCCATTTGCATCTCCCTCTCTCCCTTCAACATCCCATCCATCTCACCCTT
ATCCCTCGCCACCACAGGCCGGGGTACAGAGGCGCATGACTTTCGAAAAG
AAGGTGAAGACTCGCCGGACACCTTCCTCCTTTTCTCCCTCCTCCCTTCC
CCCCGTTGTCTATTCCAAATCCTTGCTAGGGCTGACAGTGATGAAGTGGT
ATATGACGATGGAGAAAAATGTGACGACGGATAGGCAGTTCACGAAGGTC
ATGAGAGCTAGGGAGGGAAAGGGGAGGAGGAAAGGAAGGAAGGGTGGTTG
GCATGAGAGTGCATCAAAATGGAAGTGCCTTGAAGACTTTGCAGCTACAT
AGAAGATCGACCGGGATTCGGTCAAATACTATCAGCGTATTGTCTTGAGT
AGCGGACGGGCGGAGAGAAGGAAGGGGCGGAAGGAGGGAGAGTGGGAGGG
AAGGAGGGAGAACAGAGACTTTCCTATTTTAACATCAACACAGCCCATCC
CCTCGAGCCAGACTAGTTATGTAAGTCACCGTATTGCGAAGGGACGTGCA
GGTTGTCTGATGCGAGCCTCTCCGTCCTTCCAGCCCCGCCCTCCTACACT
CCCCTGCCTTCATCTTTATCTGATCATTTATCAGCTCCCCCTCTCTCTCC
TCCCTCTTCCCTCGTGCCTTTCCCCCTTCGCACCCCACACGTACCTTCGT
CCAGATCGACAAACATGGCTATAGCGAACTCGCTGGGATGTCTACCTGTG
CGTGTGTGCGGCAATGAGTGCAGGGTAAGAGGGGCGGCATGAAAAGAGGC
GAAGGCAGCACTCGTTTTGGCGAGGCAGGCGGAGATACAGAGAGCCTAGC
CTCTGTCCACCGGTCCCCCATGGCGTGACAGCAAAGGCATACAATTGTGC
ACCATCTATGTTAGTAGAAATGTACGGTGATAGATCGAGAAATATGATGA
GTTTACATACGGGGTTTGAATGGCATGTAGCTGCTTCTGCGCGAAGAAGC
ATGGATTATGTGATGATGCATTTCGGCCAGACTCAAATGACCACAGCCAC
GCTCACCCCACAGACCTCATGAACATTCCCTACTACCACCTTCACAAATA
CAATAATGAGAAGCGCTGGGAACGGGAACCTTAAGGTAGCTGAAAATGTG
CCTTACTGTCATTGACGCCGCTCATCCCCGCGGAATAGATGCGATTCAAT
TCTTTACTGTACGAGCCTTTGTCATTTTTATTGTATCAGAGCTG

protein sequence of jgi.p|Nanoce1779_2|606886

>mRNA_9206-protein ID=mRNA_9206-protein|Name=jgi.p|Nanoce1779_2|606886|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MCFICFCFPRARYPRRAFYNLSCLATWLALVCKSCDVRLHAIVLSECRIT
AENRTNYPLLSLPLPPSLSSSDKLAMLNRISPSICISLSPFNIPSISPLS
LATTGRGTEAHDFRKEGEDSPDTFLLFSLLPSPRCLFQILARADSDEVVY
DDGEKCDDG*

mRNA from alignment at scaffold_36:221661..223254+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9206 ID=mRNA_9206|Name=jgi.p|Nanoce1779_2|606886|organism=Nannochloropsis oceanica|type=mRNA|length=1594bp|location=Sequence derived from alignment at scaffold_36:221661..223254+ (Nannochloropsis oceanica)
CTCTCATTCTTGTCCTTCTTGTTCTTCTTCTTGTTCTTCTTCCCCTCTTG
CTCCTTTCCCCTGTCCCTCTTCTCCTTCTCCTCCTGATATACTCCCCTGG
CCCTATGTGTTTCATTTGCTTTTGCTTTCCTCGCGCCAGGTATCCACGAC
GAGCATTCTACAATCTTTCCTGTCTAGCTACCTGGCTTGCCCTCGTGTGT
AAGTCCTGTGACGTAAGGTTGCATGCGATAGTTCTATCGGAATGTAGGAT
AACGGCAGAAAACAGAACTAACTACCCACTGCTCTCCCTCCCTCTTCCCC
CCTCCCTCTCTTCCTCTGACAAATTGGCAATGCTCAATAGGATTTCCCCC
TCCATTTGCATCTCCCTCTCTCCCTTCAACATCCCATCCATCTCACCCTT
ATCCCTCGCCACCACAGGCCGGGGTACAGAGGCGCATGACTTTCGAAAAG
AAGGTGAAGACTCGCCGGACACCTTCCTCCTTTTCTCCCTCCTCCCTTCC
CCCCGTTGTCTATTCCAAATCCTTGCTAGGGCTGACAGTGATGAAGTGGT
ATATGACGATGGAGAAAAATGTGACGACGGATAGGCAGTTCACGAAGGTC
ATGAGAGCTAGGGAGGGAAAGGGGAGGAGGAAAGGAAGGAAGGGTGGTTG
GCATGAGAGTGCATCAAAATGGAAGTGCCTTGAAGACTTTGCAGCTACAT
AGAAGATCGACCGGGATTCGGTCAAATACTATCAGCGTATTGTCTTGAGT
AGCGGACGGGCGGAGAGAAGGAAGGGGCGGAAGGAGGGAGAGTGGGAGGG
AAGGAGGGAGAACAGAGACTTTCCTATTTTAACATCAACACAGCCCATCC
CCTCGAGCCAGACTAGTTATGTAAGTCACCGTATTGCGAAGGGACGTGCA
GGTTGTCTGATGCGAGCCTCTCCGTCCTTCCAGCCCCGCCCTCCTACACT
CCCCTGCCTTCATCTTTATCTGATCATTTATCAGCTCCCCCTCTCTCTCC
TCCCTCTTCCCTCGTGCCTTTCCCCCTTCGCACCCCACACGTACCTTCGT
CCAGATCGACAAACATGGCTATAGCGAACTCGCTGGGATGTCTACCTGTG
CGTGTGTGCGGCAATGAGTGCAGGGTAAGAGGGGCGGCATGAAAAGAGGC
GAAGGCAGCACTCGTTTTGGCGAGGCAGGCGGAGATACAGAGAGCCTAGC
CTCTGTCCACCGGTCCCCCATGGCGTGACAGCAAAGGCATACAATTGTGC
ACCATCTATGTTAGTAGAAATGTACGGTGATAGATCGAGAAATATGATGA
GTTTACATACGGGGTTTGAATGGCATGTAGCTGCTTCTGCGCGAAGAAGC
ATGGATTATGTGATGATGCATTTCGGCCAGACTCAAATGACCACAGCCAC
GCTCACCCCACAGACCTCATGAACATTCCCTACTACCACCTTCACAAATA
CAATAATGAGAAGCGCTGGGAACGGGAACCTTAAGGTAGCTGAAAATGTG
CCTTACTGTCATTGACGCCGCTCATCCCCGCGGAATAGATGCGATTCAAT
TCTTTACTGTACGAGCCTTTGTCATTTTTATTGTATCAGAGCTG

Coding sequence (CDS) from alignment at scaffold_36:221661..223254+

>mRNA_9206 ID=mRNA_9206|Name=jgi.p|Nanoce1779_2|606886|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_36:221661..223254+ (Nannochloropsis oceanica)
ATGTGTTTCATTTGCTTTTGCTTTCCTCGCGCCAGGTATCCACGACGAGC
ATTCTACAATCTTTCCTGTCTAGCTACCTGGCTTGCCCTCGTGTGTAAGT
CCTGTGACGTAAGGTTGCATGCGATAGTTCTATCGGAATGTAGGATAACG
GCAGAAAACAGAACTAACTACCCACTGCTCTCCCTCCCTCTTCCCCCCTC
CCTCTCTTCCTCTGACAAATTGGCAATGCTCAATAGGATTTCCCCCTCCA
TTTGCATCTCCCTCTCTCCCTTCAACATCCCATCCATCTCACCCTTATCC
CTCGCCACCACAGGCCGGGGTACAGAGGCGCATGACTTTCGAAAAGAAGG
TGAAGACTCGCCGGACACCTTCCTCCTTTTCTCCCTCCTCCCTTCCCCCC
GTTGTCTATTCCAAATCCTTGCTAGGGCTGACAGTGATGAAGTGGTATAT
GACGATGGAGAAAAATGTGACGACGGATAG

Synonyms

Publications