jgi.p|Nanoce1779_2|606883, mRNA_9205 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606883
Unique NamemRNA_9205
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length630
Alignment locationscaffold_36:221005..221634 +

Link to JBrowse

Properties
Property NameValue
TranscriptId606969
TrackFilteredModels2
ProteinId606883
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:221005..221634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606883gene_9205Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606883mRNA_9205-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9205CDS_9205Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9205 ID=mRNA_9205|Name=jgi.p|Nanoce1779_2|606883|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATCGTGACTTTGGTGCA
GGAGGGGAATGGAAATGGACGGCTTCTCAAGCAGAAACAGAAGCAGCAGC
AGCAGCAGCCACAGCGGATGGTGACTCTTCACTACACCAACGAGGAGCAG
GACTCCCACCCTCCCTCGCTCCCTCGCCCTCCTCCTCCTCCCCTTGTGAT
CCGTGTTTCTTTGGCAGATGCTTTGGCTGCTGCTGCAGCTGCTCCTACTG
CCGCTACAATTGCTACTGCTTCTGAAGCGTGATCATGAGCGCTCGTTGCA
GGGGCTACACCAGAGGAAGACGAGATGTGGGAAGAGGAGGCAGCGGTGCC
GATGCAGTAGTAGCAGCAGTAGGAGGAGCTACACAATAGCACCTACAGAG
GCACCAGCCGCACCCAGGGCCAGCATTAGCAGCGCTTGTATTTCGAAGAC
TCAGGACGAACGGGGGAGAGAGAGAGAGAGAGGTGGGAGCAAGGATAGGT
AGAAAGAGACGAGAAGGACAGGACGACAACGAGTACAACGCAGAAGCGGA
AGAAGTATTTGCAGGAGCGAAAGACAAGAATTTAATTAGACAAAACACAA
CACAACCAAAAGAAAATAACCCACGAAAAA
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protein sequence of jgi.p|Nanoce1779_2|606883

>mRNA_9205-protein ID=mRNA_9205-protein|Name=jgi.p|Nanoce1779_2|606883|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MLWLLLQLLLLPLQLLLLLKRDHERSLQGLHQRKTRCGKRRQRCRCSSSS
SRRSYTIAPTEAPAAPRASISSACISKTQDERGRERERGGSKDR*
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mRNA from alignment at scaffold_36:221005..221634+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9205 ID=mRNA_9205|Name=jgi.p|Nanoce1779_2|606883|organism=Nannochloropsis oceanica|type=mRNA|length=630bp|location=Sequence derived from alignment at scaffold_36:221005..221634+ (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATCGTGACTTTGGTGCA
GGAGGGGAATGGAAATGGACGGCTTCTCAAGCAGAAACAGAAGCAGCAGC
AGCAGCAGCCACAGCGGATGGTGACTCTTCACTACACCAACGAGGAGCAG
GACTCCCACCCTCCCTCGCTCCCTCGCCCTCCTCCTCCTCCCCTTGTGAT
CCGTGTTTCTTTGGCAGATGCTTTGGCTGCTGCTGCAGCTGCTCCTACTG
CCGCTACAATTGCTACTGCTTCTGAAGCGTGATCATGAGCGCTCGTTGCA
GGGGCTACACCAGAGGAAGACGAGATGTGGGAAGAGGAGGCAGCGGTGCC
GATGCAGTAGTAGCAGCAGTAGGAGGAGCTACACAATAGCACCTACAGAG
GCACCAGCCGCACCCAGGGCCAGCATTAGCAGCGCTTGTATTTCGAAGAC
TCAGGACGAACGGGGGAGAGAGAGAGAGAGAGGTGGGAGCAAGGATAGGT
AGAAAGAGACGAGAAGGACAGGACGACAACGAGTACAACGCAGAAGCGGA
AGAAGTATTTGCAGGAGCGAAAGACAAGAATTTAATTAGACAAAACACAA
CACAACCAAAAGAAAATAACCCACGAAAAA
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Coding sequence (CDS) from alignment at scaffold_36:221005..221634+

>mRNA_9205 ID=mRNA_9205|Name=jgi.p|Nanoce1779_2|606883|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_36:221005..221634+ (Nannochloropsis oceanica)
ATGCTTTGGCTGCTGCTGCAGCTGCTCCTACTGCCGCTACAATTGCTACT
GCTTCTGAAGCGTGATCATGAGCGCTCGTTGCAGGGGCTACACCAGAGGA
AGACGAGATGTGGGAAGAGGAGGCAGCGGTGCCGATGCAGTAGTAGCAGC
AGTAGGAGGAGCTACACAATAGCACCTACAGAGGCACCAGCCGCACCCAG
GGCCAGCATTAGCAGCGCTTGTATTTCGAAGACTCAGGACGAACGGGGGA
GAGAGAGAGAGAGAGGTGGGAGCAAGGATAGGTAG
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Synonyms
Publications