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Properties
| Property Name | Value |
|---|
| TranscriptId | 560451 |
| Track | FilteredModels2 |
| ProteinId | 560365 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:208784..211260 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9201 ID=mRNA_9201|Name=jgi.p|Nanoce1779_2|560365|organism=Nannochloropsis oceanica|type=mRNA|length=2095bp
AGGGTTTGAAAGGGCGACAAGGTCTCGGTTGTAAAGCGGAGCCCGCATTT
GAAATAAGATCAAGGAACAAAGTGCCTACACACTTTTCCAACATTCGACA
ATACAAAATACAGTCAGAACGCCTTCATGCACGTATGAGTAGCGTCCTTC
TTCGCACCAGCGTAAGCACCACCGCCTTGCGAGCCTCTGGTTTCCCCTCC
GATTGCGTCGGATCACTTTCCCCCCAAGCACTGCTTGCACAACCAGAACT
CAACTCAAGGACAACACTGGCGTTTTCCACGCGACACCACCAGCCCCAGC
AGCAAACCCCCATACCCTTGGGATCATCGCCCTCTTCTCCCCAGTCCCCT
TTCACTGCTGATTTCGCTCAGCAGGCCTCCCTCCCGTCTCCCTCCCCTAC
CCCGGCTACTGCTGCATACGAGGTCCTCTTTGTGCGTCACGGGCAGTCAA
CGTGGAATCGGGACAATAGGTTCATTGGTTGGACCGATGTGCCGTTGACA
GAACAAGGATTAGAGGAAGCAAGGGAGGCAGGGCGAGTGCTGGCCCGGGA
GGGAGTGAAAGTCGACGAGGTTCACACGAGCCTCCTCAAGCGCTGCATCA
AAACGGCCTGGACTATCCTCCGTGAACTGGGACAAGAGTACACTCCCGTG
CACTGCCACTGGCGGCTGAACGAACGCAGCTATGGGTCCTTGGTTGGGCT
GGAAAAGAAATCTACAGTTGCTAGGCACGGCGTGGAGACAGTGAGGACCT
GGCGCAGATCTTTCGATGTCCGTCCCCCGCCTCAACGTATGGACGATAAA
TACTGGCCCGGAAAGGACAAGAAATATAAGAAATTGCTTGCGAGTGGGAC
ACTTCCACGAATTCCCGCGGCAGAGTGCTTGAAGGACGTGAAGGAGCGTG
CTGCGGCCCATTGGGAGGAGGTGGTGGTGCCGGCCACCAAGGCCGGGAAG
CGTGTCGTTGTCGTTGGGCACGAAAATAATTTAAGGGCATTGTTTATGCA
CATTGACCAGGTCGCACCAGAAGATATGCTGCACGTGGAGATTCCTCGAG
CGGCACCCTTGAGGTATCAATTCGACGCCCAGATGAAGCCCGTGAGGCAG
GCGGAGCCCGCCCCCTTCCTAACGGGACAGTTCCTGATATCGGCGGAGAA
AGTTGCGGCGGTCAAAGAGAGGGATTCAAGACAAGTGTATGATCTAAGAA
TTACCTCTAACTTGGAAAAAGGGAGTGGCAGTCGGAGGTGGGTGGAGGAA
CAGCCGCAGCAGGCGAAGAAGGAGGAGCAAGAGGAGCAGGTGCGGAGGGG
GCAGCAGCTGCGACTGAATCGGACGGGCTTGAGCATCAATGCTCTGAGAG
GTATCAAGGCGTCTTGGATTTCCTTGCCGGACGAGCGCGGCACTACTGGT
GCTTCTCCAGATTCCCCAGCTGCTGCTGCTGGTACTTCGGGAGGGTCGCC
CGAGACGATGAAAAGAGTGCTGAGATTGTTCGATCCCGATCAGAACCTGT
GGCGCTTTACCTATCCCTCCCTTTGAAGAGGCAAATGGATGGAGCGAAGG
CAAGAAGAGGGGTACGAAAAAGAACAGCAGTAGAAATATTATGTAGAAGA
GAAGGAGCACATTAGTGCATGAAGGGGTGATGTATGTTGTTGTGTATATG
TCAAAAATCGACATCGAGAAAGTGTAGTTGCCGGTCAACAATGAGATGGA
AAGATTGAATATGCAGACATGTAGGGCATGACTTAGAAAGGAGGTGCAAC
ACAATAGCAGCCTGCAGCAACAGCTGCAGCAAGAGCAACGATTGAATATG
CAGACATGTAGGGCATGACTTAGAAAGGAGGTGCAACACAATAGCAGCCT
GCAGCTACAGCTGCAGCAAGAGCAACTGAAAAATGTCGACTCAAACGACA
GCAGAGGTAATTAACGAGGAACAGAGAGAGCGGGGGGGCCTTGGGGTCGA
GGTTCAGGCACCTGCTTCACCAGCGACCAATACAGAAAATGGAATAACGG
AGTCACTCCGAGCTGTGATGATAATGACGACGCGCGACAAAAAAACAAAA
AAACAAATGAGCATTAAAGTAAAAAGCACGCTTATTCGACGCGGG back to topprotein sequence of jgi.p|Nanoce1779_2|560365 >mRNA_9201-protein ID=mRNA_9201-protein|Name=jgi.p|Nanoce1779_2|560365|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MSSVLLRTSVSTTALRASGFPSDCVGSLSPQALLAQPELNSRTTLAFSTR
HHQPQQQTPIPLGSSPSSPQSPFTADFAQQASLPSPSPTPATAAYEVLFV
RHGQSTWNRDNRFIGWTDVPLTEQGLEEAREAGRVLAREGVKVDEVHTSL
LKRCIKTAWTILRELGQEYTPVHCHWRLNERSYGSLVGLEKKSTVARHGV
ETVRTWRRSFDVRPPPQRMDDKYWPGKDKKYKKLLASGTLPRIPAAECLK
DVKERAAAHWEEVVVPATKAGKRVVVVGHENNLRALFMHIDQVAPEDMLH
VEIPRAAPLRYQFDAQMKPVRQAEPAPFLTGQFLISAEKVAAVKERDSRQ
VYDLRITSNLEKGSGSRRWVEEQPQQAKKEEQEEQVRRGQQLRLNRTGLS
INALRGIKASWISLPDERGTTGASPDSPAAAAGTSGGSPETMKRVLRLFD
PDQNLWRFTYPSL* back to topmRNA from alignment at scaffold_36:208784..211260- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9201 ID=mRNA_9201|Name=jgi.p|Nanoce1779_2|560365|organism=Nannochloropsis oceanica|type=mRNA|length=2477bp|location=Sequence derived from alignment at scaffold_36:208784..211260- (Nannochloropsis oceanica)
AGGGTTTGAAAGGGCGACAAGGTCTCGGTTGTAAAGCGGAGCCCGCATTT
GAAATAAGATCAAGGAACAAAGTGCCTACACACTTTTCCAACATTCGACA
ATACAAAATACAGTCAGAACGCCTTCATGCACGTATGAGTAGCGTCCTTC
TTCGCACCAGCGTAAGCACCACCGCCTTGCGAGCCTCTGGTTTCCCCTCC
GATTGCGTCGGATCACTTTCCCCCCAAGCACTGCTTGCACAACCAGAACT
CAACTCAAGGACAACACTGGCGTTTTCCACGCGACACCACCAGCCCCAGC
AGCAAACCCCCATACCCTTGGGATCATCGCCCTCTTCTCCCCAGTCCCCT
TTCACTGCTGATTTCGCTCAGCAGGCCTCCCTCCCGTCTCCCTCCCCTAC
CCCGGCTACTGCTGCATACGAGGTCCTCTTTGTGCGTCACGGGCAGTCAA
CGTGGAATCGGGACAATAGGTTCATTGGTTGGACCGATGTGCCGTTGACA
GAACAAGGATTAGAGGAAGCAAGGGAGGCAGGGCGAGTGCTGGCCCGGGA
GGGAGTGAAAGTCGACGAGGTAAGTTCTGTTTACAAAGAGGGCGGGATGG
AAGGGGTATTAATTCTGGAGCAATTTGAGCCGGAGTAGTCGGAGGGCCCA
AGGGCTTGAAGGTACACGATGGCCACCATGGCTTACGTTCATTTGGGAAA
AAAATACGATCGTGATACAGACAACCACAAACTCGCCCTTCTTACTCATT
CCCTCTCTCCCCCCCCTCCGCAGGTTCACACGAGCCTCCTCAAGCGCTGC
ATCAAAACGGCCTGGACTATCCTCCGTGAACTGGGACAAGAGTACACTCC
CGTGCACTGCCACTGGCGGCTGAACGAACGCAGCTATGGGTCCTTGGTTG
GGCTGGAAAAGAAATCTACAGTTGCTAGGCACGGCGTGGAGACAGTGAGG
ACCTGGCGCAGATCTTTCGATGTCCGTCCCCCGCCTCAACGTATGGACGA
TAAATACTGGCCCGGAAAGGACAAGAAATATAAGAAATTGCTTGCGAGTG
GGACACTTCCACGAATTCCCGCGGCAGAGTGCTTGAAGGACGTGAAGGAG
CGTGCTGCGGCCCATTGGGAGGAGGTGGTGGTGCCGGCCACCAAGGCCGG
GAAGCGTGTCGTTGTCGTTGGGCACGAAAATAATTTAAGGGCATTGTTTA
TGCACATTGACCAGGTCGCACCAGAAGATATGCTGCACGTGGAGATTCCT
CGAGCGGCACCCTTGAGGTATCAATTCGGTATGTCCTCCCAAAAAAGATA
AATTGAGTTCATGGTTGGTGGAGCCTCCTTCGCTCCCATTCACGTGCTCC
TCCCTCCCTCCCTTCCTCCCATCTTTTCTTTTTCTGTCATCATTATATTC
CTCTTACGTCTCTCTTCCCCCTCCTTCCTGTCCTTTCCCCCTCCCTCCTT
TACCAGACGCCCAGATGAAGCCCGTGAGGCAGGCGGAGCCCGCCCCCTTC
CTAACGGGACAGTTCCTGATATCGGCGGAGAAAGTTGCGGCGGTCAAAGA
GAGGGATTCAAGACAAGTGTATGATCTAAGAATTACCTCTAACTTGGAAA
AAGGGAGTGGCAGTCGGAGGTGGGTGGAGGAACAGCCGCAGCAGGCGAAG
AAGGAGGAGCAAGAGGAGCAGGTGCGGAGGGGGCAGCAGCTGCGACTGAA
TCGGACGGGCTTGAGCATCAATGCTCTGAGAGGTATCAAGGCGTCTTGGA
TTTCCTTGCCGGACGAGCGCGGCACTACTGGTGCTTCTCCAGATTCCCCA
GCTGCTGCTGCTGGTACTTCGGGAGGGTCGCCCGAGACGATGAAAAGAGT
GCTGAGATTGTTCGATCCCGATCAGAACCTGTGGCGCTTTACCTATCCCT
CCCTTTGAAGAGGCAAATGGATGGAGCGAAGGCAAGAAGAGGGGTACGAA
AAAGAACAGCAGTAGAAATATTATGTAGAAGAGAAGGAGCACATTAGTGC
ATGAAGGGGTGATGTATGTTGTTGTGTATATGTCAAAAATCGACATCGAG
AAAGTGTAGTTGCCGGTCAACAATGAGATGGAAAGATTGAATATGCAGAC
ATGTAGGGCATGACTTAGAAAGGAGGTGCAACACAATAGCAGCCTGCAGC
AACAGCTGCAGCAAGAGCAACGATTGAATATGCAGACATGTAGGGCATGA
CTTAGAAAGGAGGTGCAACACAATAGCAGCCTGCAGCTACAGCTGCAGCA
AGAGCAACTGAAAAATGTCGACTCAAACGACAGCAGAGGTAATTAACGAG
GAACAGAGAGAGCGGGGGGGCCTTGGGGTCGAGGTTCAGGCACCTGCTTC
ACCAGCGACCAATACAGAAAATGGAATAACGGAGTCACTCCGAGCTGTGA
TGATAATGACGACGCGCGACAAAAAAACAAAAAAACAAATGAGCATTAAA
GTAAAAAGCACGCTTATTCGACGCGGG back to topCoding sequence (CDS) from alignment at scaffold_36:208784..211260- >mRNA_9201 ID=mRNA_9201|Name=jgi.p|Nanoce1779_2|560365|organism=Nannochloropsis oceanica|type=CDS|length=4176bp|location=Sequence derived from alignment at scaffold_36:208784..211260- (Nannochloropsis oceanica)
ACGCCCAGATGAAGCCCGTGAGGCAGGCGGAGCCCGCCCCCTTCCTAACG
GGACAGTTCCTGATATCGGCGGAGAAAGTTGCGGCGGTCAAAGAGAGGGA
TTCAAGACAAGTGTATGATCTAAGAATTACCTCTAACTTGGAAAAAGGGA
GTGGCAGTCGGAGGTGGGTGGAGGAACAGCCGCAGCAGGCGAAGAAGGAG
GAGCAAGAGGAGCAGGTGCGGAGGGGGCAGCAGCTGCGACTGAATCGGAC
GGGCTTGAGCATCAATGCTCTGAGAGGTATCAAGGCGTCTTGGATTTCCT
TGCCGGACGAGCGCGGCACTACTGGTGCTTCTCCAGATTCCCCAGCTGCT
GCTGCTGGTACTTCGGGAGGGTCGCCCGAGACGATGAAAAGAGTGCTGAG
ATTGTTCGATCCCGATCAGAACCTGTGGCGCTTTACCTATCCCTCCCTTT
GAGTTCACACGAGCCTCCTCAAGCGCTGCATCAAAACGGCCTGGACTATC
CTCCGTGAACTGGGACAAGAGTACACTCCCGTGCACTGCCACTGGCGGCT
GAACGAACGCAGCTATGGGTCCTTGGTTGGGCTGGAAAAGAAATCTACAG
TTGCTAGGCACGGCGTGGAGACAGTGAGGACCTGGCGCAGATCTTTCGAT
GTCCGTCCCCCGCCTCAACGTATGGACGATAAATACTGGCCCGGAAAGGA
CAAGAAATATAAGAAATTGCTTGCGAGTGGGACACTTCCACGAATTCCCG
CGGCAGAGTGCTTGAAGGACGTGAAGGAGCGTGCTGCGGCCCATTGGGAG
GAGGTGGTGGTGCCGGCCACCAAGGCCGGGAAGCGTGTCGTTGTCGTTGG
GCACGAAAATAATTTAAGGGCATTGTTTATGCACATTGACCAGGTCGCAC
CAGAAGATATGCTGCACGTGGAGATTCCTCGAGCGGCACCCTTGAGGTAT
CAATTCGATGAGTAGCGTCCTTCTTCGCACCAGCGTAAGCACCACCGCCT
TGCGAGCCTCTGGTTTCCCCTCCGATTGCGTCGGATCACTTTCCCCCCAA
GCACTGCTTGCACAACCAGAACTCAACTCAAGGACAACACTGGCGTTTTC
CACGCGACACCACCAGCCCCAGCAGCAAACCCCCATACCCTTGGGATCAT
CGCCCTCTTCTCCCCAGTCCCCTTTCACTGCTGATTTCGCTCAGCAGGCC
TCCCTCCCGTCTCCCTCCCCTACCCCGGCTACTGCTGCATACGAGGTCCT
CTTTGTGCGTCACGGGCAGTCAACGTGGAATCGGGACAATAGGTTCATTG
GTTGGACCGATGTGCCGTTGACAGAACAAGGATTAGAGGAAGCAAGGGAG
GCAGGGCGAGTGCTGGCCCGGGAGGGAGTGAAAGTCGACGAGACGCCCAG
ATGAAGCCCGTGAGGCAGGCGGAGCCCGCCCCCTTCCTAACGGGACAGTT
CCTGATATCGGCGGAGAAAGTTGCGGCGGTCAAAGAGAGGGATTCAAGAC
AAGTGTATGATCTAAGAATTACCTCTAACTTGGAAAAAGGGAGTGGCAGT
CGGAGGTGGGTGGAGGAACAGCCGCAGCAGGCGAAGAAGGAGGAGCAAGA
GGAGCAGGTGCGGAGGGGGCAGCAGCTGCGACTGAATCGGACGGGCTTGA
GCATCAATGCTCTGAGAGGTATCAAGGCGTCTTGGATTTCCTTGCCGGAC
GAGCGCGGCACTACTGGTGCTTCTCCAGATTCCCCAGCTGCTGCTGCTGG
TACTTCGGGAGGGTCGCCCGAGACGATGAAAAGAGTGCTGAGATTGTTCG
ATCCCGATCAGAACCTGTGGCGCTTTACCTATCCCTCCCTTTGAGTTCAC
ACGAGCCTCCTCAAGCGCTGCATCAAAACGGCCTGGACTATCCTCCGTGA
ACTGGGACAAGAGTACACTCCCGTGCACTGCCACTGGCGGCTGAACGAAC
GCAGCTATGGGTCCTTGGTTGGGCTGGAAAAGAAATCTACAGTTGCTAGG
CACGGCGTGGAGACAGTGAGGACCTGGCGCAGATCTTTCGATGTCCGTCC
CCCGCCTCAACGTATGGACGATAAATACTGGCCCGGAAAGGACAAGAAAT
ATAAGAAATTGCTTGCGAGTGGGACACTTCCACGAATTCCCGCGGCAGAG
TGCTTGAAGGACGTGAAGGAGCGTGCTGCGGCCCATTGGGAGGAGGTGGT
GGTGCCGGCCACCAAGGCCGGGAAGCGTGTCGTTGTCGTTGGGCACGAAA
ATAATTTAAGGGCATTGTTTATGCACATTGACCAGGTCGCACCAGAAGAT
ATGCTGCACGTGGAGATTCCTCGAGCGGCACCCTTGAGGTATCAATTCGA
TGAGTAGCGTCCTTCTTCGCACCAGCGTAAGCACCACCGCCTTGCGAGCC
TCTGGTTTCCCCTCCGATTGCGTCGGATCACTTTCCCCCCAAGCACTGCT
TGCACAACCAGAACTCAACTCAAGGACAACACTGGCGTTTTCCACGCGAC
ACCACCAGCCCCAGCAGCAAACCCCCATACCCTTGGGATCATCGCCCTCT
TCTCCCCAGTCCCCTTTCACTGCTGATTTCGCTCAGCAGGCCTCCCTCCC
GTCTCCCTCCCCTACCCCGGCTACTGCTGCATACGAGGTCCTCTTTGTGC
GTCACGGGCAGTCAACGTGGAATCGGGACAATAGGTTCATTGGTTGGACC
GATGTGCCGTTGACAGAACAAGGATTAGAGGAAGCAAGGGAGGCAGGGCG
AGTGCTGGCCCGGGAGGGAGTGAAAGTCGACGAGACGCCCAGATGAAGCC
CGTGAGGCAGGCGGAGCCCGCCCCCTTCCTAACGGGACAGTTCCTGATAT
CGGCGGAGAAAGTTGCGGCGGTCAAAGAGAGGGATTCAAGACAAGTGTAT
GATCTAAGAATTACCTCTAACTTGGAAAAAGGGAGTGGCAGTCGGAGGTG
GGTGGAGGAACAGCCGCAGCAGGCGAAGAAGGAGGAGCAAGAGGAGCAGG
TGCGGAGGGGGCAGCAGCTGCGACTGAATCGGACGGGCTTGAGCATCAAT
GCTCTGAGAGGTATCAAGGCGTCTTGGATTTCCTTGCCGGACGAGCGCGG
CACTACTGGTGCTTCTCCAGATTCCCCAGCTGCTGCTGCTGGTACTTCGG
GAGGGTCGCCCGAGACGATGAAAAGAGTGCTGAGATTGTTCGATCCCGAT
CAGAACCTGTGGCGCTTTACCTATCCCTCCCTTTGAGTTCACACGAGCCT
CCTCAAGCGCTGCATCAAAACGGCCTGGACTATCCTCCGTGAACTGGGAC
AAGAGTACACTCCCGTGCACTGCCACTGGCGGCTGAACGAACGCAGCTAT
GGGTCCTTGGTTGGGCTGGAAAAGAAATCTACAGTTGCTAGGCACGGCGT
GGAGACAGTGAGGACCTGGCGCAGATCTTTCGATGTCCGTCCCCCGCCTC
AACGTATGGACGATAAATACTGGCCCGGAAAGGACAAGAAATATAAGAAA
TTGCTTGCGAGTGGGACACTTCCACGAATTCCCGCGGCAGAGTGCTTGAA
GGACGTGAAGGAGCGTGCTGCGGCCCATTGGGAGGAGGTGGTGGTGCCGG
CCACCAAGGCCGGGAAGCGTGTCGTTGTCGTTGGGCACGAAAATAATTTA
AGGGCATTGTTTATGCACATTGACCAGGTCGCACCAGAAGATATGCTGCA
CGTGGAGATTCCTCGAGCGGCACCCTTGAGGTATCAATTCGATGAGTAGC
GTCCTTCTTCGCACCAGCGTAAGCACCACCGCCTTGCGAGCCTCTGGTTT
CCCCTCCGATTGCGTCGGATCACTTTCCCCCCAAGCACTGCTTGCACAAC
CAGAACTCAACTCAAGGACAACACTGGCGTTTTCCACGCGACACCACCAG
CCCCAGCAGCAAACCCCCATACCCTTGGGATCATCGCCCTCTTCTCCCCA
GTCCCCTTTCACTGCTGATTTCGCTCAGCAGGCCTCCCTCCCGTCTCCCT
CCCCTACCCCGGCTACTGCTGCATACGAGGTCCTCTTTGTGCGTCACGGG
CAGTCAACGTGGAATCGGGACAATAGGTTCATTGGTTGGACCGATGTGCC
GTTGACAGAACAAGGATTAGAGGAAGCAAGGGAGGCAGGGCGAGTGCTGG
CCCGGGAGGGAGTGAAAGTCGACGAG back to top
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