jgi.p|Nanoce1779_2|576185, mRNA_92 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576185
Unique Name	mRNA_92
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1696
Alignment location	scaffold_3:246985..249050 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576271
Track	FilteredModels2
ProteinId	576185

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:246985..249050 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576185	gene_92	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576185	mRNA_92-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_92	CDS_92	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:246985..249050+
coding sequence from alignment at scaffold_3:246985..249050+

mRNA sequence

>mRNA_92 ID=mRNA_92|Name=jgi.p|Nanoce1779_2|576185|organism=Nannochloropsis oceanica|type=mRNA|length=1696bp
TATGTATGTGCGTGTGTTCAAAGGAGTGCTTTAGTGGAGGGAGCAGTCAG
GAAGGCAAGGGGGTATCATCATGCATGCATCATGGTTCGTTTTCGTGCCA
TGGCCTCCCCACTCTTCTTCCACGGCGTGGGCATGGCCACGGAAGTGGCA
CGAGGCTTTGCATATACCTACGAACGCCATGCGACACCAAGACGTGACTT
GTCGAAGTGGTGCCGGTTTGGAATGAAAAAGAATGCAGGAGCGGGAGGAG
TTTTGCTTCTCGAGGAAAGACATGTTGACCGTCACGACCGCTCGCCTCCT
CGCTGCCCCGAACCTGCCGGCTCTCAATTCCTACCAGCACTCACAAATAT
ACATTCTAAAACGCACACACTTGCACATGAGAGATGCAGAGCGACATGGA
GGACCCCGAAGAAGCATCTGCTTTGCTTGCTCAAGCCGCAATCTTTCCCC
CCGGCTCATTGCAACGCCGCTTTACCCTTCACTACTGGCGGCATGCAGGA
CTCGATGCCCAGAAGGAGTATCAAACACGCGAAGAAACGCACATAGGAGA
ACAAGAAGGGCATAATCTATTGTATGGTTTACATCAATACCTGTACCACC
ACCCAAACGGGCTCTTTATTGTCGGTCTAGCTAAGGACAATGTAATATTG
AAAATGTGTCGACAGGAAAGCATCACTATTGCAAGCGTAGAATTTCTGCC
TGACAACAAGCCCTCGGGGAAGGGTAAAAGAGGAGCAGGGGGCGGCGATG
TAGGGGCAGGTCCAGAAGCCACTTCGGCGGGAGCCTCCCCAGCAGGGGCC
ACTTCCACCGTAATAAAGCGCGTTAGGATTACAAGCCGCGGACGAGGTAA
AAAACAAAAGGGTAGCTTGCACGTTAGGCGGGACACAGTGTTGGCCCGCG
TGGTTCTCAGCGATGGAAGAGAGTTTCCGGTGTTTGGAGGCGTTAATGGC
CAAGTGCTGGAATTGAATGAGCTCTTAAGCGAAGACCCGGGTTTGCTGCT
TCGTCAGCCGGAGGACCAAGGATACATAGCCATCCTCCAGCCACCACGAT
TCGCCGCCATCCCGCCAGACTTGAGTCACTTGATTGCCCCGGAAGCCTAT
CGTGACGCAAGAGAAGCCGAAGGGCAAGGGAAGGACGGGGCGGGAGGGAA
TAAGGATGGCCATGCGCCAACGGGGCCATCATCATAATTGCATGTTGGTG
GAGAAATCAGTGTATGAAAATGCAAAAATACCACACGGAAAGTAAAATAA
TCAACACTGATGACCTTGAATATGGAGATTCGTGCATTGTTTGCGGCCAT
TTCATTGTGTTTGTTTGTGAAGTGAGTGGTTGACTTGTTCGCGGAATCTG
CACTGCCGCCGGAGCGGGCCTCTCTCCTCTTGTCTTTCTCTCTTTGTCCC
GATGGTCCCTCCTCTTCGTCATCCTCCACACACACCTTGGACTCATGCAG
TCATGCTCAAGTGACCATGAACTTTCGTTCTACTGGGTGCATTGGTTTTC
TTTGTGGCTGCCACATGTTCCACGCTTGTGTTGCATCTGGAACATGGTCA
CTTGTGGCTGTTTGCCGTCCCCACCACGTTGCCCTTTCGGTGCCATCATG
CTTTTCTTCGCGCGCCGTCTTTCGTGTGGTGGCCGTGACCAATTACACGG
GAACTACATGACTGAATGAATCCAGTAATGCCTCCCATTTATGGCA

protein sequence of jgi.p|Nanoce1779_2|576185

>mRNA_92-protein ID=mRNA_92-protein|Name=jgi.p|Nanoce1779_2|576185|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MQSDMEDPEEASALLAQAAIFPPGSLQRRFTLHYWRHAGLDAQKEYQTRE
ETHIGEQEGHNLLYGLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIA
SVEFLPDNKPSGKGKRGAGGGDVGAGPEATSAGASPAGATSTVIKRVRIT
SRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSE
DPGLLLRQPEDQGYIAILQPPRFAAIPPDLSHLIAPEAYRDAREAEGQGK
DGAGGNKDGHAPTGPSS*

mRNA from alignment at scaffold_3:246985..249050+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_92 ID=mRNA_92|Name=jgi.p|Nanoce1779_2|576185|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp|location=Sequence derived from alignment at scaffold_3:246985..249050+ (Nannochloropsis oceanica)
TATGTATGTGCGTGTGTTCAAAGGAGTGCTTTAGTGGAGGGAGCAGTCAG
GAAGGCAAGGGGGTATCATCATGCATGCATCATGGTTCGTTTTCGTGCCA
TGGCCTCCCCACTCTTCTTCCACGGCGTGGGCATGGCCACGGAAGTGGCA
CGAGGCTTTGCATATACCTACGAACGCCATGCGACACCAAGACGTGACTT
GTCGAAGTGGTGCCGGTTTGGAATGAAAAAGAATGCAGGAGCGGGAGGAG
TTTTGCTTCTCGAGGAAAGACATGTTGACCGTCACGACCGCTCGCCTCCT
CGCTGCCCCGAACCTGCCGGCTCTCAATTCCTACCAGCACTCACAAATAT
ACATTCTAAAACGCACACACTTGCACATGAGAGATGCAGAGCGACATGGA
GGACCCCGAAGAAGCATCTGCTTTGCTTGCTCAAGCCGCAATCTTTCCCC
CCGGCTCATTGCAACGCCGCTTTACCCTTCACTACTGGCGGCATGCAGGA
CTCGATGCCCAGAAGGAGTATCAAACACGCGAAGAAACGCACATAGGAGA
ACAAGAAGGGCATAATCTATTGTATGGTTTACATCAATACCTGTACCACC
ACCCAAACGGGCTCTTTATTGTCGGTCTAGGTAAGTCTCCTGGGCGACCT
GGCTCTTGTGCCCCGCCCGTCTCTCATCCCCTTATTCTCCCTACGTCCCC
TTCTCTCTCCACCCACGGTACAGCTAAGGACAATGTAATATTGAAAATGT
GTCGACAGGAAAGCATCACTATTGCAAGCGTAGAATTTCTGCCTGACAAC
AAGCCCTCGGGGAAGGGTAAAAGAGGAGCAGGGGGCGGCGATGTAGGGGC
AGGTCCAGAAGCCACTTCGGCGGGAGCCTCCCCAGCAGGGGCCACTTCCA
CCGTAATAAAGCGCGTTAGGATTACAAGCCGCGGACGAGGTAAAAAACAA
AAGGGTAGCTTGCACGTTAGGCGGGACACAGTGTTGGCCCGCGTGGTTCT
CAGCGATGGAAGAGAGTTTCCGGTGTTTGGGTACGTGAGGGAAGGAAATG
AGGGAAATGAAAGGGCAAGAAAACTGGCTGACAGTCGAATTATGCTACCG
CCAGCCCGACGCTTGAACTCTCTACACATATATTCGACATTTCTTTGATT
TTACAGAGGCGTTAATGGCCAAGTGCTGGAATTGAATGAGCTCTTAAGCG
AAGACCCGGGTTTGCTGCTTCGTCAGGTACGCTTTATTTTACGAAGGTTC
CCTGGTTTTGTTTTATTTTACTCTGTATGTGAGCGTCAGCAAAAATAAAT
TATAAAGTAAATCACTCGATGACCTGTCATAGCATCGTGAACGTGAATCC
CCCACCTCTTTAACCTCCCCATCCCAGCCGGAGGACCAAGGATACATAGC
CATCCTCCAGCCACCACGATTCGCCGCCATCCCGCCAGACTTGAGTCACT
TGATTGCCCCGGAAGCCTATCGTGACGCAAGAGAAGCCGAAGGGCAAGGG
AAGGACGGGGCGGGAGGGAATAAGGATGGCCATGCGCCAACGGGGCCATC
ATCATAATTGCATGTTGGTGGAGAAATCAGTGTATGAAAATGCAAAAATA
CCACACGGAAAGTAAAATAATCAACACTGATGACCTTGAATATGGAGATT
CGTGCATTGTTTGCGGCCATTTCATTGTGTTTGTTTGTGAAGTGAGTGGT
TGACTTGTTCGCGGAATCTGCACTGCCGCCGGAGCGGGCCTCTCTCCTCT
TGTCTTTCTCTCTTTGTCCCGATGGTCCCTCCTCTTCGTCATCCTCCACA
CACACCTTGGACTCATGCAGTCATGCTCAAGTGACCATGAACTTTCGTTC
TACTGGGTGCATTGGTTTTCTTTGTGGCTGCCACATGTTCCACGCTTGTG
TTGCATCTGGAACATGGTCACTTGTGGCTGTTTGCCGTCCCCACCACGTT
GCCCTTTCGGTGCCATCATGCTTTTCTTCGCGCGCCGTCTTTCGTGTGGT
GGCCGTGACCAATTACACGGGAACTACATGACTGAATGAATCCAGTAATG
CCTCCCATTTATGGCA

Coding sequence (CDS) from alignment at scaffold_3:246985..249050+

>mRNA_92 ID=mRNA_92|Name=jgi.p|Nanoce1779_2|576185|organism=Nannochloropsis oceanica|type=CDS|length=3216bp|location=Sequence derived from alignment at scaffold_3:246985..249050+ (Nannochloropsis oceanica)
ATGCAGAGCGACATGGAGGACCCCGAAGAAGCATCTGCTTTGCTTGCTCA
AGCCGCAATCTTTCCCCCCGGCTCATTGCAACGCCGCTTTACCCTTCACT
ACTGGCGGCATGCAGGACTCGATGCCCAGAAGGAGTATCAAACACGCGAA
GAAACGCACATAGGAGAACAAGAAGGGCATAATCTATTGTATGGTTTACA
TCAATACCTGTACCACCACCCAAACGGGCTCTTTATTGTCGGTCTAGCTA
AGGACAATGTAATATTGAAAATGTGTCGACAGGAAAGCATCACTATTGCA
AGCGTAGAATTTCTGCCTGACAACAAGCCCTCGGGGAAGGGTAAAAGAGG
AGCAGGGGGCGGCGATGTAGGGGCAGGTCCAGAAGCCACTTCGGCGGGAG
CCTCCCCAGCAGGGGCCACTTCCACCGTAATAAAGCGCGTTAGGATTACA
AGCCGCGGACGAGGTAAAAAACAAAAGGGTAGCTTGCACGTTAGGCGGGA
CACAGTGTTGGCCCGCGTGGTTCTCAGCGATGGAAGAGAGTTTCCGGTGT
TTGGAGGCGTTAATGGCCAAGTGCTGGAATTGAATGAGCTCTTAAGCGAA
GACCCGGGTTTGCTGCTTCGTCAGCCGGAGGACCAAGGATACATAGCCAT
CCTCCAGCCACCACGATTCGCCGCCATCCCGCCAGACTTGAGTCACTTGA
TTGCCCCGGAAGCCTATCGTGACGCAAGAGAAGCCGAAGGGCAAGGGAAG
GACGGGGCGGGAGGGAATAAGGATGGCCATGCGCCAACGGGGCCATCATC
ATAAATGCAGAGCGACATGGAGGACCCCGAAGAAGCATCTGCTTTGCTTG
CTCAAGCCGCAATCTTTCCCCCCGGCTCATTGCAACGCCGCTTTACCCTT
CACTACTGGCGGCATGCAGGACTCGATGCCCAGAAGGAGTATCAAACACG
CGAAGAAACGCACATAGGAGAACAAGAAGGGCATAATCTATTGTATGGTT
TACATCAATACCTGTACCACCACCCAAACGGGCTCTTTATTGTCGGTCTA
GCTAAGGACAATGTAATATTGAAAATGTGTCGACAGGAAAGCATCACTAT
TGCAAGCGTAGAATTTCTGCCTGACAACAAGCCCTCGGGGAAGGGTAAAA
GAGGAGCAGGGGGCGGCGATGTAGGGGCAGGTCCAGAAGCCACTTCGGCG
GGAGCCTCCCCAGCAGGGGCCACTTCCACCGTAATAAAGCGCGTTAGGAT
TACAAGCCGCGGACGAGGTAAAAAACAAAAGGGTAGCTTGCACGTTAGGC
GGGACACAGTGTTGGCCCGCGTGGTTCTCAGCGATGGAAGAGAGTTTCCG
GTGTTTGGAGGCGTTAATGGCCAAGTGCTGGAATTGAATGAGCTCTTAAG
CGAAGACCCGGGTTTGCTGCTTCGTCAGCCGGAGGACCAAGGATACATAG
CCATCCTCCAGCCACCACGATTCGCCGCCATCCCGCCAGACTTGAGTCAC
TTGATTGCCCCGGAAGCCTATCGTGACGCAAGAGAAGCCGAAGGGCAAGG
GAAGGACGGGGCGGGAGGGAATAAGGATGGCCATGCGCCAACGGGGCCAT
CATCATAAATGCAGAGCGACATGGAGGACCCCGAAGAAGCATCTGCTTTG
CTTGCTCAAGCCGCAATCTTTCCCCCCGGCTCATTGCAACGCCGCTTTAC
CCTTCACTACTGGCGGCATGCAGGACTCGATGCCCAGAAGGAGTATCAAA
CACGCGAAGAAACGCACATAGGAGAACAAGAAGGGCATAATCTATTGTAT
GGTTTACATCAATACCTGTACCACCACCCAAACGGGCTCTTTATTGTCGG
TCTAGCTAAGGACAATGTAATATTGAAAATGTGTCGACAGGAAAGCATCA
CTATTGCAAGCGTAGAATTTCTGCCTGACAACAAGCCCTCGGGGAAGGGT
AAAAGAGGAGCAGGGGGCGGCGATGTAGGGGCAGGTCCAGAAGCCACTTC
GGCGGGAGCCTCCCCAGCAGGGGCCACTTCCACCGTAATAAAGCGCGTTA
GGATTACAAGCCGCGGACGAGGTAAAAAACAAAAGGGTAGCTTGCACGTT
AGGCGGGACACAGTGTTGGCCCGCGTGGTTCTCAGCGATGGAAGAGAGTT
TCCGGTGTTTGGAGGCGTTAATGGCCAAGTGCTGGAATTGAATGAGCTCT
TAAGCGAAGACCCGGGTTTGCTGCTTCGTCAGCCGGAGGACCAAGGATAC
ATAGCCATCCTCCAGCCACCACGATTCGCCGCCATCCCGCCAGACTTGAG
TCACTTGATTGCCCCGGAAGCCTATCGTGACGCAAGAGAAGCCGAAGGGC
AAGGGAAGGACGGGGCGGGAGGGAATAAGGATGGCCATGCGCCAACGGGG
CCATCATCATAAATGCAGAGCGACATGGAGGACCCCGAAGAAGCATCTGC
TTTGCTTGCTCAAGCCGCAATCTTTCCCCCCGGCTCATTGCAACGCCGCT
TTACCCTTCACTACTGGCGGCATGCAGGACTCGATGCCCAGAAGGAGTAT
CAAACACGCGAAGAAACGCACATAGGAGAACAAGAAGGGCATAATCTATT
GTATGGTTTACATCAATACCTGTACCACCACCCAAACGGGCTCTTTATTG
TCGGTCTAGCTAAGGACAATGTAATATTGAAAATGTGTCGACAGGAAAGC
ATCACTATTGCAAGCGTAGAATTTCTGCCTGACAACAAGCCCTCGGGGAA
GGGTAAAAGAGGAGCAGGGGGCGGCGATGTAGGGGCAGGTCCAGAAGCCA
CTTCGGCGGGAGCCTCCCCAGCAGGGGCCACTTCCACCGTAATAAAGCGC
GTTAGGATTACAAGCCGCGGACGAGGTAAAAAACAAAAGGGTAGCTTGCA
CGTTAGGCGGGACACAGTGTTGGCCCGCGTGGTTCTCAGCGATGGAAGAG
AGTTTCCGGTGTTTGGAGGCGTTAATGGCCAAGTGCTGGAATTGAATGAG
CTCTTAAGCGAAGACCCGGGTTTGCTGCTTCGTCAGCCGGAGGACCAAGG
ATACATAGCCATCCTCCAGCCACCACGATTCGCCGCCATCCCGCCAGACT
TGAGTCACTTGATTGCCCCGGAAGCCTATCGTGACGCAAGAGAAGCCGAA
GGGCAAGGGAAGGACGGGGCGGGAGGGAATAAGGATGGCCATGCGCCAAC
GGGGCCATCATCATAA

Synonyms

Publications