jgi.p|Nanoce1779_2|606843, mRNA_9198 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606843
Unique NamemRNA_9198
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2053
Alignment locationscaffold_36:196637..198689 -

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Properties
Property NameValue
TranscriptId606929
TrackFilteredModels2
ProteinId606843
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:196637..198689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606843gene_9198Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606843mRNA_9198-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9198CDS_9198Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9198 ID=mRNA_9198|Name=jgi.p|Nanoce1779_2|606843|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp
GTCCTGGCGACAGCACGAAGGGCGGAGGATCCATTGCTCGCTGCCGCTGC
TGCTGCTGTTGCTGCTGCTGCTGACAGTAGGTATTACCCTCCCTATCTTC
CCGTACCCTCCCCCTCTCCTCTTCCTTCTCCACCTCACCATCTTGCTCCA
CTAAGTGCTGCCCCAGCGCGAGCGGCGCCCGGACTGGCGACGCCGGCGGA
AGCACCTCCATCCCGGCGTCCCTCATCTGCTGCCTCTCGCGCGCTTCCTG
GAAAATCCTCTCCTGCTCCTGCGCCAGCTCCATCTCTCTTTCTTCTGTCT
CCCTCTGCGTCTTCTCTTTCGCAAGACGATGATGCTCGCGGCTCGTGCAG
GTTTCGCACGGACAACTCTCACACACACAGTGCCCCCCCGCGCACCCGCG
GCATATTAAGCACTTCCGACGGCCCTTGCACTTACATGCGCGACTATCAC
ACTCCACGCTTATCCGGACACAGCAACCAGTCGCCGCGGCCTTTGGCCCG
TCCTCCATCTCTTTCTTTCCCGCTGTTGCTACAGCTGCTGCTGCTATTGC
AGCCGTAGCGGCCGCGCAGGTTTCGCTGTTCTCATGAATCGTGCATACCC
CTTGTTCTTGTTGTTGTTGTTGCTGCCGGTTTTGCTGCTTAGCCTTGACC
TTTCTTTTTATAATTGTAACCATACATTTGCTTTGACCATTACCGCTTTT
GCCATTGCCATTACGGGTGCGTTTACGCGGGGAAGTGGTGGTGGTGGAAA
CATCTTTTCCTTCGCCCTCGACATCCTCCTGCTCCTCTTCATTTTCATCT
CCGCCCTTGTGCCGTTTCTTACTTGCCGGCGCTTTAATCCTGCGGATCAC
TTTCTTTACAATGGCTGAGATGCTACTGCTACTCACAAGGATGTGGGTCC
CGCTCCATTTTCTTCCTTCATGTGACCTGGCGACGGTGGTGCCCGTTGCG
CACCTCCCTTCCTCTCCATCGATAGGAGTTGTTCCTGCAGCTGTTGCCGT
GCTGTCAGCAGACAATGATATTCTCCGCTCGTCTGAGCTTCCCGATGTGC
CCCGTTCTCTCCCAGACTCCTTCTCGCTCTCAACCAGAACCACCGCCGCT
GACTCTACTCTCCTCGGCGTCTGCGGAGAGGAGGGTGGGACGCCTTGTTG
CGGAGCCAATATCGGCGTGACAGGTTCTTCCATTTCCCGTCCTTCCTGTG
TGCTCACAGCTGTGGTAATCGGAGTGGTTCTTGTCGTTATTATTGGCTTG
GTCTCCCCCCTCCTTGACTTGGTAGTCTTTGTCTCGGAAGCAAAGACGAA
GTGCGGCAAGCTAGGAGTGGCCACGCAAGGCCTCGGTTGGCTGGCGCTGG
TGCTGCCATTGCTGCTTGTTATTGACAGCATGATGGGAGAGTTGTCGATG
GACCTGCAGAGCGGTGTGGGACAGGAGATGTACATGTGTGAGTATGGGGT
GTGGGTATGGGTGTGCGCGCGCATGTTGGGCTCCTTGAAGGAGAGATGGC
CTCACCCAGAAAAAGCTCGGTTGGGAATGGGCAGACTAGCTTACCTTTTC
AGATTTTAGGGCCCACTCTTCTGCCACCAGGTCGTCCAAATGCCCTTTCT
TCTTCCTTGATCGTTGAAAGGGCGGTGTTGTGGCCGTGACTGTGATATGT
GAAGAGGAAAAAAGATGGGAAATCCAGCACGTACACCGTAAATTAGTGAG
CCAACGTCTCCACATCAGGCGCAGGAGGTCGCCCATCCTAGGCCGCCGAA
CCAACACCACGCTCTCGTGCACTACTTGGCAGTCTCAGCATGTTCTGCAA
AGCGGTAAAGGTATTGAGGGTGGATTTATGTCTGCGGCTGTGCTATAAAG
TGACAAGTATCTACGCGGAGAGACTTCCGGGTAGCTAGCTATCTTGAGGT
GTCCAAGTGTGAATCTGTCCAAGCAACGATCCCAAACCACTAGTCCTGAA
ATCAGAAGGTAACCAAACACCCTTCATGACAGTCATTTGATTTTTTGTTG
TTGTTTTCGTTCTTTTTTCTTTGTGATCTGGATCACCTTCCCTGCCCTGA
AGT
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protein sequence of jgi.p|Nanoce1779_2|606843

>mRNA_9198-protein ID=mRNA_9198-protein|Name=jgi.p|Nanoce1779_2|606843|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MAEMLLLLTRMWVPLHFLPSCDLATVVPVAHLPSSPSIGVVPAAVAVLSA
DNDILRSSELPDVPRSLPDSFSLSTRTTAADSTLLGVCGEEGGTPCCGAN
IGVTGSSISRPSCVLTAVVIGVVLVVIIGLVSPLLDLVVFVSEAKTKCGK
LGVATQGLGWLALVLPLLLVIDSMMGELSMDLQSGVGQEMYMCEYGVWVW
VCARMLGSLKERWPHPEKARLGMGRLAYLFRF*
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mRNA from alignment at scaffold_36:196637..198689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9198 ID=mRNA_9198|Name=jgi.p|Nanoce1779_2|606843|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp|location=Sequence derived from alignment at scaffold_36:196637..198689- (Nannochloropsis oceanica)
GTCCTGGCGACAGCACGAAGGGCGGAGGATCCATTGCTCGCTGCCGCTGC
TGCTGCTGTTGCTGCTGCTGCTGACAGTAGGTATTACCCTCCCTATCTTC
CCGTACCCTCCCCCTCTCCTCTTCCTTCTCCACCTCACCATCTTGCTCCA
CTAAGTGCTGCCCCAGCGCGAGCGGCGCCCGGACTGGCGACGCCGGCGGA
AGCACCTCCATCCCGGCGTCCCTCATCTGCTGCCTCTCGCGCGCTTCCTG
GAAAATCCTCTCCTGCTCCTGCGCCAGCTCCATCTCTCTTTCTTCTGTCT
CCCTCTGCGTCTTCTCTTTCGCAAGACGATGATGCTCGCGGCTCGTGCAG
GTTTCGCACGGACAACTCTCACACACACAGTGCCCCCCCGCGCACCCGCG
GCATATTAAGCACTTCCGACGGCCCTTGCACTTACATGCGCGACTATCAC
ACTCCACGCTTATCCGGACACAGCAACCAGTCGCCGCGGCCTTTGGCCCG
TCCTCCATCTCTTTCTTTCCCGCTGTTGCTACAGCTGCTGCTGCTATTGC
AGCCGTAGCGGCCGCGCAGGTTTCGCTGTTCTCATGAATCGTGCATACCC
CTTGTTCTTGTTGTTGTTGTTGCTGCCGGTTTTGCTGCTTAGCCTTGACC
TTTCTTTTTATAATTGTAACCATACATTTGCTTTGACCATTACCGCTTTT
GCCATTGCCATTACGGGTGCGTTTACGCGGGGAAGTGGTGGTGGTGGAAA
CATCTTTTCCTTCGCCCTCGACATCCTCCTGCTCCTCTTCATTTTCATCT
CCGCCCTTGTGCCGTTTCTTACTTGCCGGCGCTTTAATCCTGCGGATCAC
TTTCTTTACAATGGCTGAGATGCTACTGCTACTCACAAGGATGTGGGTCC
CGCTCCATTTTCTTCCTTCATGTGACCTGGCGACGGTGGTGCCCGTTGCG
CACCTCCCTTCCTCTCCATCGATAGGAGTTGTTCCTGCAGCTGTTGCCGT
GCTGTCAGCAGACAATGATATTCTCCGCTCGTCTGAGCTTCCCGATGTGC
CCCGTTCTCTCCCAGACTCCTTCTCGCTCTCAACCAGAACCACCGCCGCT
GACTCTACTCTCCTCGGCGTCTGCGGAGAGGAGGGTGGGACGCCTTGTTG
CGGAGCCAATATCGGCGTGACAGGTTCTTCCATTTCCCGTCCTTCCTGTG
TGCTCACAGCTGTGGTAATCGGAGTGGTTCTTGTCGTTATTATTGGCTTG
GTCTCCCCCCTCCTTGACTTGGTAGTCTTTGTCTCGGAAGCAAAGACGAA
GTGCGGCAAGCTAGGAGTGGCCACGCAAGGCCTCGGTTGGCTGGCGCTGG
TGCTGCCATTGCTGCTTGTTATTGACAGCATGATGGGAGAGTTGTCGATG
GACCTGCAGAGCGGTGTGGGACAGGAGATGTACATGTGTGAGTATGGGGT
GTGGGTATGGGTGTGCGCGCGCATGTTGGGCTCCTTGAAGGAGAGATGGC
CTCACCCAGAAAAAGCTCGGTTGGGAATGGGCAGACTAGCTTACCTTTTC
AGATTTTAGGGCCCACTCTTCTGCCACCAGGTCGTCCAAATGCCCTTTCT
TCTTCCTTGATCGTTGAAAGGGCGGTGTTGTGGCCGTGACTGTGATATGT
GAAGAGGAAAAAAGATGGGAAATCCAGCACGTACACCGTAAATTAGTGAG
CCAACGTCTCCACATCAGGCGCAGGAGGTCGCCCATCCTAGGCCGCCGAA
CCAACACCACGCTCTCGTGCACTACTTGGCAGTCTCAGCATGTTCTGCAA
AGCGGTAAAGGTATTGAGGGTGGATTTATGTCTGCGGCTGTGCTATAAAG
TGACAAGTATCTACGCGGAGAGACTTCCGGGTAGCTAGCTATCTTGAGGT
GTCCAAGTGTGAATCTGTCCAAGCAACGATCCCAAACCACTAGTCCTGAA
ATCAGAAGGTAACCAAACACCCTTCATGACAGTCATTTGATTTTTTGTTG
TTGTTTTCGTTCTTTTTTCTTTGTGATCTGGATCACCTTCCCTGCCCTGA
AGT
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Coding sequence (CDS) from alignment at scaffold_36:196637..198689-

>mRNA_9198 ID=mRNA_9198|Name=jgi.p|Nanoce1779_2|606843|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_36:196637..198689- (Nannochloropsis oceanica)
ATGGCTGAGATGCTACTGCTACTCACAAGGATGTGGGTCCCGCTCCATTT
TCTTCCTTCATGTGACCTGGCGACGGTGGTGCCCGTTGCGCACCTCCCTT
CCTCTCCATCGATAGGAGTTGTTCCTGCAGCTGTTGCCGTGCTGTCAGCA
GACAATGATATTCTCCGCTCGTCTGAGCTTCCCGATGTGCCCCGTTCTCT
CCCAGACTCCTTCTCGCTCTCAACCAGAACCACCGCCGCTGACTCTACTC
TCCTCGGCGTCTGCGGAGAGGAGGGTGGGACGCCTTGTTGCGGAGCCAAT
ATCGGCGTGACAGGTTCTTCCATTTCCCGTCCTTCCTGTGTGCTCACAGC
TGTGGTAATCGGAGTGGTTCTTGTCGTTATTATTGGCTTGGTCTCCCCCC
TCCTTGACTTGGTAGTCTTTGTCTCGGAAGCAAAGACGAAGTGCGGCAAG
CTAGGAGTGGCCACGCAAGGCCTCGGTTGGCTGGCGCTGGTGCTGCCATT
GCTGCTTGTTATTGACAGCATGATGGGAGAGTTGTCGATGGACCTGCAGA
GCGGTGTGGGACAGGAGATGTACATGTGTGAGTATGGGGTGTGGGTATGG
GTGTGCGCGCGCATGTTGGGCTCCTTGAAGGAGAGATGGCCTCACCCAGA
AAAAGCTCGGTTGGGAATGGGCAGACTAGCTTACCTTTTCAGATTTTAG
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Synonyms
Publications