jgi.p|Nanoce1779_2|560357, mRNA_9196 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|560357
Unique Name	mRNA_9196
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1984
Alignment location	scaffold_36:192366..194568 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	560443
Track	FilteredModels2
ProteinId	560357

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:192366..194568 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560357	gene_9196	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560357	mRNA_9196-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9196	CDS_9196	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:192366..194568-
coding sequence from alignment at scaffold_36:192366..194568-

mRNA sequence

>mRNA_9196 ID=mRNA_9196|Name=jgi.p|Nanoce1779_2|560357|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp
GAATCAAGTGCCGCGCGCTCGTCCCGTTGAAACTGAACTAGTCTTTGCCC
ATTTCCTTCTGCGTTCTTGGTTTCACTCTGTCCCTCACAACGCTCTCCAC
CGCGCCCACATGCATGGCCAAGATAGGGGAAAGCAAGCAGACAGGACCAG
CATCGCTTCTTCCCTTTTAGTTCTTTATCTCCCAATCCGCGCAAAGTCAA
GCGAATAGCACTATGAAGGCAACCACTGCGAGTGACCTTATGGCGACCGG
CCTGGATGCCATGCGCAAGTTTTTGCTTATGCAGTACCCTTATGAGTTTG
AGATCTGTCTTTTCGCCTTCTGCCTCGGTGCCTCCATGCGAGTCCGGCCC
TCAGCCCAACACTCATGGCTCCACCACCTTGTCCTAGTCTTCCTCACCGG
CTTCGCAGGCGGGACCATCATCCCTATGTTCTTCGGACGCACCCCCGTTA
TCTTCGTAAACGATGTCCTCGTCCCCCTCGTCTGCCTCTCGTGGTACCTG
GTCCACTTTACATGTGCCGGCCCGTTGCTCCAATCCTCCCCTTTGAAATT
CGTCCTCGTCTGCCTCTTCGAAATTTACCGTGCCGCCAGCATTATCAAAA
CTGTCGGTCAGGTTGCCGCGGACATCCCTCCCGGGCCTTATTATCCCATT
CCATTGGTTGGTCCCGTCCTCGTTGGCACTCTCTCCGGAAGCATGGGCGC
CTTCATGCCCCCCGACCGCGGCATCTCCTTCCTCGCCTCCGGCGTGCCTC
TCAACCTTCAAACCACCATACTGGCCTGCACATTTTTTCATTTCGCCGCA
CATGATCCCCACTTAGTAGGCGCCTACCTCCGAGGGTTACCCGGACTGAG
GCTCAACGAACCCGAGAACCTCAAGGCACTCACTGTTTTCTTCTTCGTCG
CCATGGCCTTTATCTCTTTGATCAAAGGACCGGATTACAACCCCTTTGCC
CCTTTCCACCGCACCCTCTACCAACTTCTCGGTATTCCACTTTCCCCCGC
AACCGAAGAACGCCTCAAGGCAAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGTCGTCGTCCCCCCTCCACGAAGGACAAAAGCCACCTA
TTACAAGGAAGCAAGATCCTCGTCCCCATCCTTGCCATCCTCGCCTATCA
ATTTGCCGGCACTGGCAAGATCTTTCCCCGCACTAGCCTGCCCGTCGGTG
GGCGCCTGAATCCGGGTGACTACTTGTCAGCCTGCGGTCTAGCCAAGACC
TACGCCGGTCAATGTACTCAGCAGCACTTCCTCACTCTTGACGCCGATGG
TCGGCTATCCCTCTACAAGGGTACCTCTCCGAAGGACACGGGCAGTCAGA
GGGTGTGGCAGAGCAAGAACACGAAGAAGGCCGGGAAGTTGTCGGATGCC
GGCATATTCGCCGAGCTCCGACCGGAAGGAGTGTTGGTGTTGAAGCACAC
AGGAGACGGGGAAAATGTGTATTGGTCGTCGCCCGCAATGAAAAAGAAGC
AGAAGGGAAAGGAGGGGGGCAGGAAAGTCAGGGTGCAGGTGATGGAACGG
GGGGCGTTTGGAGTGTTTGAAGGGGAGAAGGCGCTGTGGACGAGCGATGG
GTTGGGGTTGAATGCCTAAGGACGTGCTCGAGGCAATTTCTCTCCCTCCT
TCCCTCAGTACTTTCTCCTTTGCTCGATTCTACATGCTTAGTATTAATAG
CATGGACTGGGTGGTTTCTACAGGAGGGATGGTGGGAAGAAGGGCTGCAA
ATTTGTGTGTAATGTGAAATGATAAGAGAGAAGAAATGATGACGGTAACC
GAGAGAGAGACCGAGGCTGACATAGCGCAAGGGAATGATGTCTTTCTTGT
TTAATGTACTGCATGTATTTTGGTTCGAAGGTGCATGCAACAGGGTGAAA
AGAAGGAGAAGGTAGGGATGACAATGCTACCAAAGTACTTATTCGGCGAT
CTCAAAGTATCATCCCTTAAGCTCACTGCACTTG

protein sequence of jgi.p|Nanoce1779_2|560357

>mRNA_9196-protein ID=mRNA_9196-protein|Name=jgi.p|Nanoce1779_2|560357|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MKATTASDLMATGLDAMRKFLLMQYPYEFEICLFAFCLGASMRVRPSAQH
SWLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVHFT
CAGPLLQSSPLKFVLVCLFEIYRAASIIKTVGQVAADIPPGPYYPIPLVG
PVLVGTLSGSMGAFMPPDRGISFLASGVPLNLQTTILACTFFHFAAHDPH
LVGAYLRGLPGLRLNEPENLKALTVFFFVAMAFISLIKGPDYNPFAPFHR
TLYQLLGIPLSPATEERLKASSSSSSSSSSSSSSRRPPSTKDKSHLLQGS
KILVPILAILAYQFAGTGKIFPRTSLPVGGRLNPGDYLSACGLAKTYAGQ
CTQQHFLTLDADGRLSLYKGTSPKDTGSQRVWQSKNTKKAGKLSDAGIFA
ELRPEGVLVLKHTGDGENVYWSSPAMKKKQKGKEGGRKVRVQVMERGAFG
VFEGEKALWTSDGLGLNA*

mRNA from alignment at scaffold_36:192366..194568-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9196 ID=mRNA_9196|Name=jgi.p|Nanoce1779_2|560357|organism=Nannochloropsis oceanica|type=mRNA|length=2203bp|location=Sequence derived from alignment at scaffold_36:192366..194568- (Nannochloropsis oceanica)
GAATCAAGTGCCGCGCGCTCGTCCCGTTGAAACTGAACTAGTCTTTGCCC
ATTTCCTTCTGCGTTCTTGGTTTCACTCTGTCCCTCACAACGCTCTCCAC
CGCGCCCACATGCATGGCCAAGATAGGGGAAAGCAAGCAGACAGGACCAG
CATCGCTTCTTCCCTTTTAGTTCTTTATCTCCCAATCCGCGCAAAGTCAA
GCGAATAGCACTATGAAGGCAACCACTGCGAGTGACCTTATGGCGACCGG
CCTGGATGCCATGCGCAAGTTTTTGCTTATGCAGTACCCTTATGAGTTTG
AGGTAGGTGCAACGAAGGAGGACTGGTGATGGGGTCGGGGGTAGCTGTCG
TGAGGAAACAACCGACAGAGGCAACGCTGAAGAGCGGCCGCGACGTCTCA
CGACGACATACGCTTCCCGGACTGAATGTTGTTTAGCTTGTTGCGAAAGA
TGGGGCTTGACATTGTGCACGCACACACATCTCCTATTTATATCCACTCC
CTCCCTCCTCCTACGACATAGATCTGTCTTTTCGCCTTCTGCCTCGGTGC
CTCCATGCGAGTCCGGCCCTCAGCCCAACACTCATGGCTCCACCACCTTG
TCCTAGTCTTCCTCACCGGCTTCGCAGGCGGGACCATCATCCCTATGTTC
TTCGGACGCACCCCCGTTATCTTCGTAAACGATGTCCTCGTCCCCCTCGT
CTGCCTCTCGTGGTACCTGGTCCACTTTACATGTGCCGGCCCGTTGCTCC
AATCCTCCCCTTTGAAATTCGTCCTCGTCTGCCTCTTCGAAATTTACCGT
GCCGCCAGCATTATCAAAACTGTCGGTCAGGTTGCCGCGGACATCCCTCC
CGGGCCTTATTATCCCATTCCATTGGTTGGTCCCGTCCTCGTTGGCACTC
TCTCCGGAAGCATGGGCGCCTTCATGCCCCCCGACCGCGGCATCTCCTTC
CTCGCCTCCGGCGTGCCTCTCAACCTTCAAACCACCATACTGGCCTGCAC
ATTTTTTCATTTCGCCGCACATGATCCCCACTTAGTAGGCGCCTACCTCC
GAGGGTTACCCGGACTGAGGCTCAACGAACCCGAGAACCTCAAGGCACTC
ACTGTTTTCTTCTTCGTCGCCATGGCCTTTATCTCTTTGATCAAAGGACC
GGATTACAACCCCTTTGCCCCTTTCCACCGCACCCTCTACCAACTTCTCG
GTATTCCACTTTCCCCCGCAACCGAAGAACGCCTCAAGGCAAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCGTCGTCCCCCCTCCAC
GAAGGACAAAAGCCACCTATTACAAGGAAGCAAGATCCTCGTCCCCATCC
TTGCCATCCTCGCCTATCAATTTGCCGGCACTGGCAAGATCTTTCCCCGC
ACTAGCCTGCCCGTCGGTGGGCGCCTGAATCCGGGTGACTACTTGTCAGC
CTGCGGTCTAGCCAAGACCTACGCCGGTCAATGTACTCAGCAGCACTTCC
TCACTCTTGACGCCGATGGTCGGCTATCCCTCTACAAGGGTACCTCTCCG
AAGGACACGGGCAGTCAGAGGGTGTGGCAGAGCAAGAACACGAAGAAGGC
CGGGAAGTTGTCGGATGCCGGCATATTCGCCGAGCTCCGACCGGAAGGAG
TGTTGGTGTTGAAGCACACAGGAGACGGGGAAAATGTGTATTGGTCGTCG
CCCGCAATGAAAAAGAAGCAGAAGGGAAAGGAGGGGGGCAGGAAAGTCAG
GGTGCAGGTGATGGAACGGGGGGCGTTTGGAGTGTTTGAAGGGGAGAAGG
CGCTGTGGACGAGCGATGGGTTGGGGTTGAATGCCTAAGGACGTGCTCGA
GGCAATTTCTCTCCCTCCTTCCCTCAGTACTTTCTCCTTTGCTCGATTCT
ACATGCTTAGTATTAATAGCATGGACTGGGTGGTTTCTACAGGAGGGATG
GTGGGAAGAAGGGCTGCAAATTTGTGTGTAATGTGAAATGATAAGAGAGA
AGAAATGATGACGGTAACCGAGAGAGAGACCGAGGCTGACATAGCGCAAG
GGAATGATGTCTTTCTTGTTTAATGTACTGCATGTATTTTGGTTCGAAGG
TGCATGCAACAGGGTGAAAAGAAGGAGAAGGTAGGGATGACAATGCTACC
AAAGTACTTATTCGGCGATCTCAAAGTATCATCCCTTAAGCTCACTGCAC
TTG

Coding sequence (CDS) from alignment at scaffold_36:192366..194568-

>mRNA_9196 ID=mRNA_9196|Name=jgi.p|Nanoce1779_2|560357|organism=Nannochloropsis oceanica|type=CDS|length=2814bp|location=Sequence derived from alignment at scaffold_36:192366..194568- (Nannochloropsis oceanica)
ATCTGTCTTTTCGCCTTCTGCCTCGGTGCCTCCATGCGAGTCCGGCCCTC
AGCCCAACACTCATGGCTCCACCACCTTGTCCTAGTCTTCCTCACCGGCT
TCGCAGGCGGGACCATCATCCCTATGTTCTTCGGACGCACCCCCGTTATC
TTCGTAAACGATGTCCTCGTCCCCCTCGTCTGCCTCTCGTGGTACCTGGT
CCACTTTACATGTGCCGGCCCGTTGCTCCAATCCTCCCCTTTGAAATTCG
TCCTCGTCTGCCTCTTCGAAATTTACCGTGCCGCCAGCATTATCAAAACT
GTCGGTCAGGTTGCCGCGGACATCCCTCCCGGGCCTTATTATCCCATTCC
ATTGGTTGGTCCCGTCCTCGTTGGCACTCTCTCCGGAAGCATGGGCGCCT
TCATGCCCCCCGACCGCGGCATCTCCTTCCTCGCCTCCGGCGTGCCTCTC
AACCTTCAAACCACCATACTGGCCTGCACATTTTTTCATTTCGCCGCACA
TGATCCCCACTTAGTAGGCGCCTACCTCCGAGGGTTACCCGGACTGAGGC
TCAACGAACCCGAGAACCTCAAGGCACTCACTGTTTTCTTCTTCGTCGCC
ATGGCCTTTATCTCTTTGATCAAAGGACCGGATTACAACCCCTTTGCCCC
TTTCCACCGCACCCTCTACCAACTTCTCGGTATTCCACTTTCCCCCGCAA
CCGAAGAACGCCTCAAGGCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGTCGTCGTCCCCCCTCCACGAAGGACAAAAGCCACCTATT
ACAAGGAAGCAAGATCCTCGTCCCCATCCTTGCCATCCTCGCCTATCAAT
TTGCCGGCACTGGCAAGATCTTTCCCCGCACTAGCCTGCCCGTCGGTGGG
CGCCTGAATCCGGGTGACTACTTGTCAGCCTGCGGTCTAGCCAAGACCTA
CGCCGGTCAATGTACTCAGCAGCACTTCCTCACTCTTGACGCCGATGGTC
GGCTATCCCTCTACAAGGGTACCTCTCCGAAGGACACGGGCAGTCAGAGG
GTGTGGCAGAGCAAGAACACGAAGAAGGCCGGGAAGTTGTCGGATGCCGG
CATATTCGCCGAGCTCCGACCGGAAGGAGTGTTGGTGTTGAAGCACACAG
GAGACGGGGAAAATGTGTATTGGTCGTCGCCCGCAATGAAAAAGAAGCAG
AAGGGAAAGGAGGGGGGCAGGAAAGTCAGGGTGCAGGTGATGGAACGGGG
GGCGTTTGGAGTGTTTGAAGGGGAGAAGGCGCTGTGGACGAGCGATGGGT
TGGGGTTGAATGCCTAAATGAAGGCAACCACTGCGAGTGACCTTATGGCG
ACCGGCCTGGATGCCATGCGCAAGTTTTTGCTTATGCAGTACCCTTATGA
GTTTGAGATCTGTCTTTTCGCCTTCTGCCTCGGTGCCTCCATGCGAGTCC
GGCCCTCAGCCCAACACTCATGGCTCCACCACCTTGTCCTAGTCTTCCTC
ACCGGCTTCGCAGGCGGGACCATCATCCCTATGTTCTTCGGACGCACCCC
CGTTATCTTCGTAAACGATGTCCTCGTCCCCCTCGTCTGCCTCTCGTGGT
ACCTGGTCCACTTTACATGTGCCGGCCCGTTGCTCCAATCCTCCCCTTTG
AAATTCGTCCTCGTCTGCCTCTTCGAAATTTACCGTGCCGCCAGCATTAT
CAAAACTGTCGGTCAGGTTGCCGCGGACATCCCTCCCGGGCCTTATTATC
CCATTCCATTGGTTGGTCCCGTCCTCGTTGGCACTCTCTCCGGAAGCATG
GGCGCCTTCATGCCCCCCGACCGCGGCATCTCCTTCCTCGCCTCCGGCGT
GCCTCTCAACCTTCAAACCACCATACTGGCCTGCACATTTTTTCATTTCG
CCGCACATGATCCCCACTTAGTAGGCGCCTACCTCCGAGGGTTACCCGGA
CTGAGGCTCAACGAACCCGAGAACCTCAAGGCACTCACTGTTTTCTTCTT
CGTCGCCATGGCCTTTATCTCTTTGATCAAAGGACCGGATTACAACCCCT
TTGCCCCTTTCCACCGCACCCTCTACCAACTTCTCGGTATTCCACTTTCC
CCCGCAACCGAAGAACGCCTCAAGGCAAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTCGTCGTCCCCCCTCCACGAAGGACAAAAGCC
ACCTATTACAAGGAAGCAAGATCCTCGTCCCCATCCTTGCCATCCTCGCC
TATCAATTTGCCGGCACTGGCAAGATCTTTCCCCGCACTAGCCTGCCCGT
CGGTGGGCGCCTGAATCCGGGTGACTACTTGTCAGCCTGCGGTCTAGCCA
AGACCTACGCCGGTCAATGTACTCAGCAGCACTTCCTCACTCTTGACGCC
GATGGTCGGCTATCCCTCTACAAGGGTACCTCTCCGAAGGACACGGGCAG
TCAGAGGGTGTGGCAGAGCAAGAACACGAAGAAGGCCGGGAAGTTGTCGG
ATGCCGGCATATTCGCCGAGCTCCGACCGGAAGGAGTGTTGGTGTTGAAG
CACACAGGAGACGGGGAAAATGTGTATTGGTCGTCGCCCGCAATGAAAAA
GAAGCAGAAGGGAAAGGAGGGGGGCAGGAAAGTCAGGGTGCAGGTGATGG
AACGGGGGGCGTTTGGAGTGTTTGAAGGGGAGAAGGCGCTGTGGACGAGC
GATGGGTTGGGGTTGAATGCCTAAATGAAGGCAACCACTGCGAGTGACCT
TATGGCGACCGGCCTGGATGCCATGCGCAAGTTTTTGCTTATGCAGTACC
CTTATGAGTTTGAG

Synonyms

Publications