jgi.p|Nanoce1779_2|606831, mRNA_9194 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606831
Unique NamemRNA_9194
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length519
Alignment locationscaffold_36:189934..190912 -

Link to JBrowse

Properties
Property NameValue
TranscriptId606917
TrackFilteredModels2
ProteinId606831
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:189934..190912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606831gene_9194Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606831mRNA_9194-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9194CDS_9194Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9194 ID=mRNA_9194|Name=jgi.p|Nanoce1779_2|606831|organism=Nannochloropsis oceanica|type=mRNA|length=519bp
ACAGGAGACCGCTCCAACAACCCCAACTCCTTGTCATGTCTGCCGAGAAG
GGTGCAAAGATTTTCAAGACCAAGTGCTCCCAGTGCCACACAGTCGAAAA
GGGCGGTGCGCACAAGCAGGGACCTAACCTGAACGGCATTTTTGGCCGGC
AGTCGGGTCAGGCGGAGAATTACTCGTACTCAACTGCCAACAAGAACTCA
GGCATCATGTGGGGGGAGGACACTCTCTTCGAGTACCTGCTGGCGCCCAA
GAACTACATCAAGGGCACCAAGATGGTCTTCGCCGGCATCAAGTCCGCCA
AGGACCGCAAGGACCTGATCGCTTACCTCAAGGAGTCCACGTAAGCCTCT
CCCTCCCTCCCTCCCTTCATCCCTTCTCCCCTCCCCTTTATCCCTCCCTC
CTGCGCTCTTCTCAGCTGATCGGCTGGTGCCGAGCACCACATGTGTCCAT
ATGTCTCATTTTCCCTCTTTCGACTTTCGACGTCTTCTCACCACAGCGCC
TAGACGTAAAGCGGGATTG
back to top

protein sequence of jgi.p|Nanoce1779_2|606831

>mRNA_9194-protein ID=mRNA_9194-protein|Name=jgi.p|Nanoce1779_2|606831|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MSAEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYST
ANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLKE
ST*
back to top

mRNA from alignment at scaffold_36:189934..190912-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9194 ID=mRNA_9194|Name=jgi.p|Nanoce1779_2|606831|organism=Nannochloropsis oceanica|type=mRNA|length=979bp|location=Sequence derived from alignment at scaffold_36:189934..190912- (Nannochloropsis oceanica)
ACAGGAGACCGCTCCAACAACCCCAACTCCTTGTCATGTCTGCCGAGAAG
GGTGCAAAGATTTTCAAGACCAAGTGCTCCCAGTGCCACACAGTCGAAAA
GGTTCGTTCTCGTTTGCATGCGTGGCAAGCTCGGGTGGTGGTGGGTGGGT
GTTCAGGTATTGTGAGTAAGCACAGGACAGGAAGATAAAACACGCTTGAT
GCAGGTATGCAATTTGCTGTACGTAAAAATGGCCTTAATCCATGAAAGTA
CGTTGCGGGAGATGCCAAGCATTTGTGCAGCGAGGATCAAGTGCGGGGCA
GAGCACGACCTTGCGTCTGCGGACAGCATGCTTTAGGGCCTGAGTTGAGG
CCTCCACCTTTCGCTCAAGAGAGTGCTTTTGGTGTGCTTGTGCAGGAGGA
AACATACCCCTGACTCTCGGTCGCAGTTCTAAGATGCATTTGTTCCACGT
CCCATTTCATATTATGTCGGAGTTATGGCCTATCTCATCCTTTTCCCTGT
CCCACCCGAGTCACGGTTCTCACACATCCTCTCTTCGTTCCTCCACAATG
TACAAAAACAGGGCGGTGCGCACAAGCAGGGACCTAACCTGAACGGCATT
TTTGGCCGGCAGTCGGGTCAGGCGGAGAATTACTCGTACTCAACTGCCAA
CAAGAACTCAGGCATCATGTGGGGGGAGGACACTCTCTTCGAGTACCTGC
TGGCGCCCAAGAACTACATCAAGGGCACCAAGATGGTCTTCGCCGGCATC
AAGTCCGCCAAGGACCGCAAGGACCTGATCGCTTACCTCAAGGAGTCCAC
GTAAGCCTCTCCCTCCCTCCCTCCCTTCATCCCTTCTCCCCTCCCCTTTA
TCCCTCCCTCCTGCGCTCTTCTCAGCTGATCGGCTGGTGCCGAGCACCAC
ATGTGTCCATATGTCTCATTTTCCCTCTTTCGACTTTCGACGTCTTCTCA
CCACAGCGCCTAGACGTAAAGCGGGATTG
back to top

Coding sequence (CDS) from alignment at scaffold_36:189934..190912-

>mRNA_9194 ID=mRNA_9194|Name=jgi.p|Nanoce1779_2|606831|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_36:189934..190912- (Nannochloropsis oceanica)
GGCGGTGCGCACAAGCAGGGACCTAACCTGAACGGCATTTTTGGCCGGCA
GTCGGGTCAGGCGGAGAATTACTCGTACTCAACTGCCAACAAGAACTCAG
GCATCATGTGGGGGGAGGACACTCTCTTCGAGTACCTGCTGGCGCCCAAG
AACTACATCAAGGGCACCAAGATGGTCTTCGCCGGCATCAAGTCCGCCAA
GGACCGCAAGGACCTGATCGCTTACCTCAAGGAGTCCACGTAAATGTCTG
CCGAGAAGGGTGCAAAGATTTTCAAGACCAAGTGCTCCCAGTGCCACACA
GTCGAAAAGGGCGGTGCGCACAAGCAGGGACCTAACCTGAACGGCATTTT
TGGCCGGCAGTCGGGTCAGGCGGAGAATTACTCGTACTCAACTGCCAACA
AGAACTCAGGCATCATGTGGGGGGAGGACACTCTCTTCGAGTACCTGCTG
GCGCCCAAGAACTACATCAAGGGCACCAAGATGGTCTTCGCCGGCATCAA
GTCCGCCAAGGACCGCAAGGACCTGATCGCTTACCTCAAGGAGTCCACGT
AAATGTCTGCCGAGAAGGGTGCAAAGATTTTCAAGACCAAGTGCTCCCAG
TGCCACACAGTCGAAAAG
back to top
Synonyms
Publications