jgi.p|Nanoce1779_2|274579, mRNA_9192 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|274579
Unique NamemRNA_9192
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length675
Alignment locationscaffold_36:182243..183393 -

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Properties
Property NameValue
TranscriptId274665
TrackFilteredModels2
ProteinId274579
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:182243..183393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|274579gene_9192Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|274579mRNA_9192-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9192CDS_9192Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9192 ID=mRNA_9192|Name=jgi.p|Nanoce1779_2|274579|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
CCAGAAAGCCATCCTCATACCGTACTCAAACGTCCTCTTTATCTATTCCA
ACTACACGCCCACACTGTGCGTCTTCCTATGCTGTTGTACTCTTCCGTAG
CATCTAAACCATGGGGAAAGGTAAACCCGCGGGGTCCAACGCCGGGCGCA
AGCTGCGGGTACACAGACGTAATGAGAAGTGGGCCAGCAAGACGTGGAAC
AAGGCGCACTCTGTCACGCATATGAAGGCCAACCCTCTCGGTGGAGCCGC
CATGGCCAAGGGCATCGTCCTTGAGAAGATCGGTATTGAGGCCAAGCAGC
CGAACTCCGCTATTCGCAAATGCGTGCGTGTACAATTGATCAAGAACGGG
AAGAAGATCGCCGCTTTTGTGCCCCGAGATGGTTGCCTCAACTTCGTCGA
CGAAAACGACGAGGTACTGATTGCTGGTTTCGGTCGCTCTGGGCACGCCG
TGGGTGACATTCCCGGTGTCCGCTTTAAGGTTGTCAAGGTCTCAGGGGTG
GGCCTGCTCGCGCTCTTCAAGGACAAGAAGGAGAAGCCCCGATCGTAAGC
CAATTGGTAGCTCGTCGTCACGGAGAGTTAGCAGCAGGAACAGCATCCAG
CAGCCGCAAGAGGGACGAGGAGGACCCCTATCTTCCATCTTTAGCGGCAG
GTTATGAACGGATGTCTACCATTAA
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protein sequence of jgi.p|Nanoce1779_2|274579

>mRNA_9192-protein ID=mRNA_9192-protein|Name=jgi.p|Nanoce1779_2|274579|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAK
GIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDEND
EVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS*
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mRNA from alignment at scaffold_36:182243..183393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9192 ID=mRNA_9192|Name=jgi.p|Nanoce1779_2|274579|organism=Nannochloropsis oceanica|type=mRNA|length=1151bp|location=Sequence derived from alignment at scaffold_36:182243..183393- (Nannochloropsis oceanica)
CCAGAAAGCCATCCTCATACCGTACTCAAACGTCCTCTTTATCTATTCCA
ACTACACGCCCACACTGTGCGTCTTCCTATGCTGTTGTACTCTTCCGTAG
CATCTAAACCATGGGGAAAGGGTAAGTGGGTCCTTGGGCTGAGAGGTTGG
GGTAAAAGGCAATGGAAGAAGAAAGGAGGGGATGCGCTTGTCTGTGTAGG
TGAGGATGCATAGACGCGCCTTTCACCGCATCTCCTCCTCCACCACCATT
CTCTCCTCCTTCATCTTTTCTTCACAGTAAACCCGCGGGGTCCAACGCCG
GGCGCAAGCTGCGGGTACACAGACGTAATGAGAAGTGGGCCAGCAAGACG
TGGAACAAGGCGCACTCTGTCACGCATATGAAGGCCAACCCTCTCGGTGG
AGCCGCCATGGCCAAGGGCATCGTCCTTGAGAAGATGTTAGTAAGGAAGT
GCTAGGGGTGGGGGAGTCCCTGCTTGTTGGAATTTTGCCTGAGCAAGAAA
AGAACTAGGACTGACTTTTTCTTTCTTGTCTCCCTTTCCCTTCCTTCCCA
CAGCGGTATTGAGGCCAAGCAGCCGAACTCCGCTATTCGCAAATGCGTGC
GTGTACAATTGATCAAGAACGGGAAGAAGATCGCCGCTTTTGTGCCCCGA
GATGGTTGCCTCAACTTCGTCGACGAAAACGTAAGTTGTTGGTTGGTGGG
GCGATTGACACGGCAAAGGATAGCTTTGTCGGAGCGTGAAAAAGCTTACG
CACGCGCACGATCTTCCCTATTTTTGAATTTTCTACAGGACGAGGTACTG
ATTGCTGGTTTCGGTCGCTCTGGGCACGCCGTGGGTGACATTCCCGGTGT
CCGCTTTAAGGTTGTCAAGGTCTCAGGGGTGGGCCTGCTCGCGCTCTTCA
AGGACAAGAAGGTGCGTATTTGAATGAACAGGGAAGAAAGGATTAATGTT
CTCAGGCTTAAGATGACTCATTTAATTTTTACGTTTTTCGTCTTCTCTGA
TCACAGGAGAAGCCCCGATCGTAAGCCAATTGGTAGCTCGTCGTCACGGA
GAGTTAGCAGCAGGAACAGCATCCAGCAGCCGCAAGAGGGACGAGGAGGA
CCCCTATCTTCCATCTTTAGCGGCAGGTTATGAACGGATGTCTACCATTA
A
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Coding sequence (CDS) from alignment at scaffold_36:182243..183393-

>mRNA_9192 ID=mRNA_9192|Name=jgi.p|Nanoce1779_2|274579|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at scaffold_36:182243..183393- (Nannochloropsis oceanica)
GAGAAGCCCCGATCGTAAGACGAGGTACTGATTGCTGGTTTCGGTCGCTC
TGGGCACGCCGTGGGTGACATTCCCGGTGTCCGCTTTAAGGTTGTCAAGG
TCTCAGGGGTGGGCCTGCTCGCGCTCTTCAAGGACAAGAAGCGGTATTGA
GGCCAAGCAGCCGAACTCCGCTATTCGCAAATGCGTGCGTGTACAATTGA
TCAAGAACGGGAAGAAGATCGCCGCTTTTGTGCCCCGAGATGGTTGCCTC
AACTTCGTCGACGAAAACTAAACCCGCGGGGTCCAACGCCGGGCGCAAGC
TGCGGGTACACAGACGTAATGAGAAGTGGGCCAGCAAGACGTGGAACAAG
GCGCACTCTGTCACGCATATGAAGGCCAACCCTCTCGGTGGAGCCGCCAT
GGCCAAGGGCATCGTCCTTGAGAAGATATGGGGAAAGGGAGAAGCCCCGA
TCGTAAGACGAGGTACTGATTGCTGGTTTCGGTCGCTCTGGGCACGCCGT
GGGTGACATTCCCGGTGTCCGCTTTAAGGTTGTCAAGGTCTCAGGGGTGG
GCCTGCTCGCGCTCTTCAAGGACAAGAAGCGGTATTGAGGCCAAGCAGCC
GAACTCCGCTATTCGCAAATGCGTGCGTGTACAATTGATCAAGAACGGGA
AGAAGATCGCCGCTTTTGTGCCCCGAGATGGTTGCCTCAACTTCGTCGAC
GAAAACTAAACCCGCGGGGTCCAACGCCGGGCGCAAGCTGCGGGTACACA
GACGTAATGAGAAGTGGGCCAGCAAGACGTGGAACAAGGCGCACTCTGTC
ACGCATATGAAGGCCAACCCTCTCGGTGGAGCCGCCATGGCCAAGGGCAT
CGTCCTTGAGAAGATATGGGGAAAGGGAGAAGCCCCGATCGTAAGACGAG
GTACTGATTGCTGGTTTCGGTCGCTCTGGGCACGCCGTGGGTGACATTCC
CGGTGTCCGCTTTAAGGTTGTCAAGGTCTCAGGGGTGGGCCTGCTCGCGC
TCTTCAAGGACAAGAAGCGGTATTGAGGCCAAGCAGCCGAACTCCGCTAT
TCGCAAATGCGTGCGTGTACAATTGATCAAGAACGGGAAGAAGATCGCCG
CTTTTGTGCCCCGAGATGGTTGCCTCAACTTCGTCGACGAAAACTAAACC
CGCGGGGTCCAACGCCGGGCGCAAGCTGCGGGTACACAGACGTAATGAGA
AGTGGGCCAGCAAGACGTGGAACAAGGCGCACTCTGTCACGCATATGAAG
GCCAACCCTCTCGGTGGAGCCGCCATGGCCAAGGGCATCGTCCTTGAGAA
GATATGGGGAAAGGGAGAAGCCCCGATCGTAAGACGAGGTACTGATTGCT
GGTTTCGGTCGCTCTGGGCACGCCGTGGGTGACATTCCCGGTGTCCGCTT
TAAGGTTGTCAAGGTCTCAGGGGTGGGCCTGCTCGCGCTCTTCAAGGACA
AGAAGCGGTATTGAGGCCAAGCAGCCGAACTCCGCTATTCGCAAATGCGT
GCGTGTACAATTGATCAAGAACGGGAAGAAGATCGCCGCTTTTGTGCCCC
GAGATGGTTGCCTCAACTTCGTCGACGAAAACTAAACCCGCGGGGTCCAA
CGCCGGGCGCAAGCTGCGGGTACACAGACGTAATGAGAAGTGGGCCAGCA
AGACGTGGAACAAGGCGCACTCTGTCACGCATATGAAGGCCAACCCTCTC
GGTGGAGCCGCCATGGCCAAGGGCATCGTCCTTGAGAAGATATGGGGAAA
GGGAGAAGCCCCGATCGTAAGACGAGGTACTGATTGCTGGTTTCGGTCGC
TCTGGGCACGCCGTGGGTGACATTCCCGGTGTCCGCTTTAAGGTTGTCAA
GGTCTCAGGGGTGGGCCTGCTCGCGCTCTTCAAGGACAAGAAGCGGTATT
GAGGCCAAGCAGCCGAACTCCGCTATTCGCAAATGCGTGCGTGTACAATT
GATCAAGAACGGGAAGAAGATCGCCGCTTTTGTGCCCCGAGATGGTTGCC
TCAACTTCGTCGACGAAAACTAAACCCGCGGGGTCCAACGCCGGGCGCAA
GCTGCGGGTACACAGACGTAATGAGAAGTGGGCCAGCAAGACGTGGAACA
AGGCGCACTCTGTCACGCATATGAAGGCCAACCCTCTCGGTGGAGCCGCC
ATGGCCAAGGGCATCGTCCTTGAGAAGATATGGGGAAAGG
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Synonyms
Publications