jgi.p|Nanoce1779_2|560342, mRNA_9187 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|560342
Unique Name	mRNA_9187
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2390
Alignment location	scaffold_36:170144..172533 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	560428
Track	FilteredModels2
ProteinId	560342

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:170144..172533 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560342	gene_9187	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560342	mRNA_9187-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9187	CDS_9187	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:170144..172533+
coding sequence from alignment at scaffold_36:170144..172533+

mRNA sequence

>mRNA_9187 ID=mRNA_9187|Name=jgi.p|Nanoce1779_2|560342|organism=Nannochloropsis oceanica|type=mRNA|length=2390bp
GGGCGCCATCCAATCCCAGTCTTAGATGCCACTGACACTGTGTTTCGCTC
TTGTCCACGCATCTGCCTTGGTGCCAGCTAAGCGGTGCTCGGCGTAGAAA
AGGGATACCGGCGCCTCGGTCGCTGCAGCAGGCGAAATTCTTCCGTTAAC
TGTTGCCATCGGTCTCCACTGATACGCACGCCTATGATCTGCTTTACGAT
ACAACTCCCTGATACATGCTCATTTCTCGCTTATTGTGAAATACACGCAG
GCACTTGGAACAAGTGGGGGACGCCACGCGTCCAAGGCAGTCGGGCCATC
AAGAAAGCAAGCGACATTGTTCTTTGCTCTCATACCGCCGCCTTGTTCTT
CTTGACTTGACGCTGCCAGCAGAGGCGAAGCAGGCATATCCAGAAAAGAT
TCGGAGGTCGGCGGGCTAACCAGGACCGCGATATACGTCTGCGAGCCTGG
GAGACGACATTGGCCACCATGTCAGCGCCACCTGGCGGCCTGCCAATTCC
ATCCAACCTGGCCTTCCCTCTACCTTCATCGTCGTCTTCACAAGCCCGCC
CCGGTGCCTGCGGTGGCTCTCCCGGACCCTCGCTTCCTCCTCCTCCTGGC
AGATTCGATGCTCAGCCTGCCCCTGTCGCCGCCGGCGATGGCCTGCCAAG
TAGGGATGGTCGATTCCATTTGGCATATGGTTGTGCGCCGCCATTCCAAC
CACACCCTCCTCCTTCGTCCCATTCGCCGGGCTACCCACCCACTGGCCCT
TCCCTTTCCCTCCCATCAGGCTACTATGCACCTCCTCCGTCACTACAACA
ACAATCGTCAGGCGACAAAGCTTATGCGAATAGCAATAATGGCTTCCCTT
CTTTAACACATCTCCCACCCCACGGAAGCGTGGCTCCTGCTTCCCTGGAT
GGTGGTATGGGTGACGATGAAGGAAGGAACGTGATCAGCGGTGGTGGTGG
TGGAGGAGGAAAAGGAGGAGGAGGAAAGAAAGGAACGCGCTTGTCGCAAG
AAGACTTGGAAAAGGAGCAGTTACGCGGGCGATGGACGGAGGAGGAGCAT
CAGGCATTTCTAAGCGGGCTGCGCGTTTATGGGAGGGAGTGGAAGCGGGT
AGCAGCAGACATCCCCACCAGAACCAGTGCTCAGATACGGTCTCATGCAC
AGAAATATTTTGCGAAGTTGTCTAAATCGAGGGGCTTCGCAGTTTCGAAT
GGGGGTGGCATGGCCCTAGACGCGGAGGGGACAGCGATGTACATTGGTTC
AGAAGGGGGCTACCGGACGAAGAGCCTGTTGACAGGACGAGGTTCTGGTG
AGCATGATGGTCTTCCTCCTTCGCATGCTCCTTGCTTGGCGCAGTATTCT
TATATGCCTAATACAGCTCAGCCGCTCCACGGCCAGCAGCAGCAGCAGCA
GCGGCAGCAGCGAAGTCATTCTCAGTTGCAGGCAGAGGCGGCCTACAGCG
CTTATCACCATCACAACCACCACAACAACCACCAGTACCATCAGCAGCAG
TCGCACCACCAGCACCACCACCACCAGCAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGTACCACCAGCACCAGCGAGTATATTCGC
GGACAGAGGAGGAATTGGCGTTACTGAGTGAAGTGGACGTTGTGCTGGGC
AAGCTGAAGGCCCGACGGGAAGAAGTAATCAGGAAGGAAGGAGGGAAGGC
CGAAGGGGAGTCAGAAAAGAGGCAGAAGCAGGAAGAAGGAGAGGAGCGAC
AACAAACACCGCGACAGCAGGGGGAGGAAGGAGCCAAAGAGCTGGCTAGC
AGTCACCAGCAAGATGTAGCGCATCCACACGGCGGACAAGGGGAAACTGA
GCCGCGGCAGCTCTCATCTACGCACTTCCGCACAGCCCAAGGTGAAGGTC
ACCAGCCCCTCCCCGAACAGGGTGCTGCTCCTCCCTAATACCTCCCTCTG
TCCTCCTCGTCCTCCACTATCACTTGTACCGTGCGCTTGCCAAGAGAGGA
ACAGGTACGGGAGGAGGAGGAACGGAATTTAAGGAAGAAGGGGCAATCTG
GTATTTTCAGGGCAGTGACAGCTGCTGCGGAATCGGGGGCTCCATCACCT
CTGCGGATGGGCGTGCGTGGTCAAGAAGGACGTATACCCATCTAGGCCCT
GGTTTGGGCGGAAAGGGAGGAGAAAATGTGGAAGAGGGAGGATAAATGAC
CAGGAAAGCAAGAGGAGGGGCGGGAAAAAGCAGCATAGAGAATAAGAGGA
AGCCCGAACACGCGAGCTGTCATGATGAACAGCGGAATTTAACATCAGAA
GCAGCACCAGCACCAGCACCAGCACCAGCAGCAGTGTGGCACGCTTGAAG
GTATGCGGTGTGTGTACACGTGTATGTGTGAGGTGTGCGT

protein sequence of jgi.p|Nanoce1779_2|560342

>mRNA_9187-protein ID=mRNA_9187-protein|Name=jgi.p|Nanoce1779_2|560342|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MSAPPGGLPIPSNLAFPLPSSSSSQARPGACGGSPGPSLPPPPGRFDAQP
APVAAGDGLPSRDGRFHLAYGCAPPFQPHPPPSSHSPGYPPTGPSLSLPS
GYYAPPPSLQQQSSGDKAYANSNNGFPSLTHLPPHGSVAPASLDGGMGDD
EGRNVISGGGGGGGKGGGGKKGTRLSQEDLEKEQLRGRWTEEEHQAFLSG
LRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSKSRGFAVSNGGGMAL
DAEGTAMYIGSEGGYRTKSLLTGRGSGEHDGLPPSHAPCLAQYSYMPNTA
QPLHGQQQQQQRQQRSHSQLQAEAAYSAYHHHNHHNNHQYHQQQSHHQHH
HHQQQQQQQQQQQQQQQQYHQHQRVYSRTEEELALLSEVDVVLGKLKARR
EEVIRKEGGKAEGESEKRQKQEEGEERQQTPRQQGEEGAKELASSHQQDV
AHPHGGQGETEPRQLSSTHFRTAQGEGHQPLPEQGAAPP*

mRNA from alignment at scaffold_36:170144..172533+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9187 ID=mRNA_9187|Name=jgi.p|Nanoce1779_2|560342|organism=Nannochloropsis oceanica|type=mRNA|length=2390bp|location=Sequence derived from alignment at scaffold_36:170144..172533+ (Nannochloropsis oceanica)
GGGCGCCATCCAATCCCAGTCTTAGATGCCACTGACACTGTGTTTCGCTC
TTGTCCACGCATCTGCCTTGGTGCCAGCTAAGCGGTGCTCGGCGTAGAAA
AGGGATACCGGCGCCTCGGTCGCTGCAGCAGGCGAAATTCTTCCGTTAAC
TGTTGCCATCGGTCTCCACTGATACGCACGCCTATGATCTGCTTTACGAT
ACAACTCCCTGATACATGCTCATTTCTCGCTTATTGTGAAATACACGCAG
GCACTTGGAACAAGTGGGGGACGCCACGCGTCCAAGGCAGTCGGGCCATC
AAGAAAGCAAGCGACATTGTTCTTTGCTCTCATACCGCCGCCTTGTTCTT
CTTGACTTGACGCTGCCAGCAGAGGCGAAGCAGGCATATCCAGAAAAGAT
TCGGAGGTCGGCGGGCTAACCAGGACCGCGATATACGTCTGCGAGCCTGG
GAGACGACATTGGCCACCATGTCAGCGCCACCTGGCGGCCTGCCAATTCC
ATCCAACCTGGCCTTCCCTCTACCTTCATCGTCGTCTTCACAAGCCCGCC
CCGGTGCCTGCGGTGGCTCTCCCGGACCCTCGCTTCCTCCTCCTCCTGGC
AGATTCGATGCTCAGCCTGCCCCTGTCGCCGCCGGCGATGGCCTGCCAAG
TAGGGATGGTCGATTCCATTTGGCATATGGTTGTGCGCCGCCATTCCAAC
CACACCCTCCTCCTTCGTCCCATTCGCCGGGCTACCCACCCACTGGCCCT
TCCCTTTCCCTCCCATCAGGCTACTATGCACCTCCTCCGTCACTACAACA
ACAATCGTCAGGCGACAAAGCTTATGCGAATAGCAATAATGGCTTCCCTT
CTTTAACACATCTCCCACCCCACGGAAGCGTGGCTCCTGCTTCCCTGGAT
GGTGGTATGGGTGACGATGAAGGAAGGAACGTGATCAGCGGTGGTGGTGG
TGGAGGAGGAAAAGGAGGAGGAGGAAAGAAAGGAACGCGCTTGTCGCAAG
AAGACTTGGAAAAGGAGCAGTTACGCGGGCGATGGACGGAGGAGGAGCAT
CAGGCATTTCTAAGCGGGCTGCGCGTTTATGGGAGGGAGTGGAAGCGGGT
AGCAGCAGACATCCCCACCAGAACCAGTGCTCAGATACGGTCTCATGCAC
AGAAATATTTTGCGAAGTTGTCTAAATCGAGGGGCTTCGCAGTTTCGAAT
GGGGGTGGCATGGCCCTAGACGCGGAGGGGACAGCGATGTACATTGGTTC
AGAAGGGGGCTACCGGACGAAGAGCCTGTTGACAGGACGAGGTTCTGGTG
AGCATGATGGTCTTCCTCCTTCGCATGCTCCTTGCTTGGCGCAGTATTCT
TATATGCCTAATACAGCTCAGCCGCTCCACGGCCAGCAGCAGCAGCAGCA
GCGGCAGCAGCGAAGTCATTCTCAGTTGCAGGCAGAGGCGGCCTACAGCG
CTTATCACCATCACAACCACCACAACAACCACCAGTACCATCAGCAGCAG
TCGCACCACCAGCACCACCACCACCAGCAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGTACCACCAGCACCAGCGAGTATATTCGC
GGACAGAGGAGGAATTGGCGTTACTGAGTGAAGTGGACGTTGTGCTGGGC
AAGCTGAAGGCCCGACGGGAAGAAGTAATCAGGAAGGAAGGAGGGAAGGC
CGAAGGGGAGTCAGAAAAGAGGCAGAAGCAGGAAGAAGGAGAGGAGCGAC
AACAAACACCGCGACAGCAGGGGGAGGAAGGAGCCAAAGAGCTGGCTAGC
AGTCACCAGCAAGATGTAGCGCATCCACACGGCGGACAAGGGGAAACTGA
GCCGCGGCAGCTCTCATCTACGCACTTCCGCACAGCCCAAGGTGAAGGTC
ACCAGCCCCTCCCCGAACAGGGTGCTGCTCCTCCCTAATACCTCCCTCTG
TCCTCCTCGTCCTCCACTATCACTTGTACCGTGCGCTTGCCAAGAGAGGA
ACAGGTACGGGAGGAGGAGGAACGGAATTTAAGGAAGAAGGGGCAATCTG
GTATTTTCAGGGCAGTGACAGCTGCTGCGGAATCGGGGGCTCCATCACCT
CTGCGGATGGGCGTGCGTGGTCAAGAAGGACGTATACCCATCTAGGCCCT
GGTTTGGGCGGAAAGGGAGGAGAAAATGTGGAAGAGGGAGGATAAATGAC
CAGGAAAGCAAGAGGAGGGGCGGGAAAAAGCAGCATAGAGAATAAGAGGA
AGCCCGAACACGCGAGCTGTCATGATGAACAGCGGAATTTAACATCAGAA
GCAGCACCAGCACCAGCACCAGCACCAGCAGCAGTGTGGCACGCTTGAAG
GTATGCGGTGTGTGTACACGTGTATGTGTGAGGTGTGCGT

Coding sequence (CDS) from alignment at scaffold_36:170144..172533+

>mRNA_9187 ID=mRNA_9187|Name=jgi.p|Nanoce1779_2|560342|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_36:170144..172533+ (Nannochloropsis oceanica)
ATGTCAGCGCCACCTGGCGGCCTGCCAATTCCATCCAACCTGGCCTTCCC
TCTACCTTCATCGTCGTCTTCACAAGCCCGCCCCGGTGCCTGCGGTGGCT
CTCCCGGACCCTCGCTTCCTCCTCCTCCTGGCAGATTCGATGCTCAGCCT
GCCCCTGTCGCCGCCGGCGATGGCCTGCCAAGTAGGGATGGTCGATTCCA
TTTGGCATATGGTTGTGCGCCGCCATTCCAACCACACCCTCCTCCTTCGT
CCCATTCGCCGGGCTACCCACCCACTGGCCCTTCCCTTTCCCTCCCATCA
GGCTACTATGCACCTCCTCCGTCACTACAACAACAATCGTCAGGCGACAA
AGCTTATGCGAATAGCAATAATGGCTTCCCTTCTTTAACACATCTCCCAC
CCCACGGAAGCGTGGCTCCTGCTTCCCTGGATGGTGGTATGGGTGACGAT
GAAGGAAGGAACGTGATCAGCGGTGGTGGTGGTGGAGGAGGAAAAGGAGG
AGGAGGAAAGAAAGGAACGCGCTTGTCGCAAGAAGACTTGGAAAAGGAGC
AGTTACGCGGGCGATGGACGGAGGAGGAGCATCAGGCATTTCTAAGCGGG
CTGCGCGTTTATGGGAGGGAGTGGAAGCGGGTAGCAGCAGACATCCCCAC
CAGAACCAGTGCTCAGATACGGTCTCATGCACAGAAATATTTTGCGAAGT
TGTCTAAATCGAGGGGCTTCGCAGTTTCGAATGGGGGTGGCATGGCCCTA
GACGCGGAGGGGACAGCGATGTACATTGGTTCAGAAGGGGGCTACCGGAC
GAAGAGCCTGTTGACAGGACGAGGTTCTGGTGAGCATGATGGTCTTCCTC
CTTCGCATGCTCCTTGCTTGGCGCAGTATTCTTATATGCCTAATACAGCT
CAGCCGCTCCACGGCCAGCAGCAGCAGCAGCAGCGGCAGCAGCGAAGTCA
TTCTCAGTTGCAGGCAGAGGCGGCCTACAGCGCTTATCACCATCACAACC
ACCACAACAACCACCAGTACCATCAGCAGCAGTCGCACCACCAGCACCAC
CACCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGTACCACCAGCACCAGCGAGTATATTCGCGGACAGAGGAGGAATTGG
CGTTACTGAGTGAAGTGGACGTTGTGCTGGGCAAGCTGAAGGCCCGACGG
GAAGAAGTAATCAGGAAGGAAGGAGGGAAGGCCGAAGGGGAGTCAGAAAA
GAGGCAGAAGCAGGAAGAAGGAGAGGAGCGACAACAAACACCGCGACAGC
AGGGGGAGGAAGGAGCCAAAGAGCTGGCTAGCAGTCACCAGCAAGATGTA
GCGCATCCACACGGCGGACAAGGGGAAACTGAGCCGCGGCAGCTCTCATC
TACGCACTTCCGCACAGCCCAAGGTGAAGGTCACCAGCCCCTCCCCGAAC
AGGGTGCTGCTCCTCCCTAA

Synonyms

Publications