jgi.p|Nanoce1779_2|606801, mRNA_9186 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606801
Unique NamemRNA_9186
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1807
Alignment locationscaffold_36:166967..168773 -

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Properties
Property NameValue
TranscriptId606887
TrackFilteredModels2
ProteinId606801
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:166967..168773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606801gene_9186Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606801mRNA_9186-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9186CDS_9186Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9186 ID=mRNA_9186|Name=jgi.p|Nanoce1779_2|606801|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp
CTTCAGGAGTGGTCGCCTCGCGAGCTTCCTGGTTGGCTGATGCGGGGGAG
GAGGAAGGAGAAGAGGACGAGGACGAGGACGTGGAAGAGGAGGACGAAGA
GGGAGCGGGTAGGCGAGATTATCGTGAGCAAAGTCGGCGCCGGAGCGCGA
GAGCTGGCCAAGATGGCGGAGGGGGAGGCGGACATAGCAGCAGGGAGAGA
CGAGATGCTTCCTTTTCGGAAGGGTCGTCGTCGTCGTCCACTGCCAGCGC
CGGCAACAGCACTGACGTGACCATCCCTTACAACACCAGTCGCCCAGAGC
GCCAACGGCATCAGCACCAGCACCAGCACCAGCACCAGCACGTCGCGAGC
TCTCCACGGGTTCTGGCTGTCGCTAGATCTCCCGAGGTCGCGTGGGACTT
GTTTCCTGTCCTGAGCTTGCACGGCGTCGGGGAATCGGCGCGCGTCAATT
TCGGTCAGGAGCCTTTCTGCTTCGATCTACAGGCGAAGCGCGTGGCAGAC
GAGGCGGAGAGGGAGCGGCGACTTGCAGGGGAGGGAATGGAGCGGGGGGT
AGAGGAAAAGGTGGAAGTGGACGCGCTCATCAAGGACTATTTGCTTGTAG
CGGGCTATCGGGAGACCTTGCGTTGCTTCGATGATGTCATTAGCTCTAGC
GCCCCTGCCATAACGAATCCTGCGGCGACGATTGCTGTGAAACAGGAGAA
AACGCCCTATGGTGGGGGCTCGTCGAGCTCGACGATGGACATCGTGGGAG
CGTCGGAAGAGCAGCAGCCAGGCCCCAACAGTAGCTGCGGCCGCGAGCAC
GAGGAGAATGCAAGCGGCGAATTGAGTAGAGACCGACCAAGTACGTTTGC
TCAAAGCTTGCGGGAGCGGACGGTGCACTTGAGCTGCAGTCTGACGTTTC
GGCATGAGTTGCGGCAGATGCTCCTTTCCGGCGGAGGAGTGGCCGTGATC
ACAGAGCACTTGATCAAGAATTATCCACGATTGTGGCGCCAACGCCCTAT
CATCCGCTTTGAATTGCACAGCCTTGCTTACTTGGATTTGTTGCGGCAGG
GTGAGGGTGCGCTGCGAGAGGCGCTGGTCTATGCGCAACAGAAGCTGTTG
CCCTTTACCTTAGGGGATACCCACCAGTTGGAAACGATAGGGGGCCTGGA
AGGAGACGTCGACCAAGACAGTAGCATGAACATGGTGATGGGTGGAAAGG
ATAGCAATGACGACATTCCGAGTCCGAGCAAGGGCCGTAAGATGAATTTC
CGGCGACGGCGTTTCCTCAGGAAGCGTGAGGTTGACCCAGGGGGGCCAGC
CGAGCGACGGCCCCGGAGCCCGGAGCCTCTTCGCTCCTCATCGTTTGTCT
CGCCTCGCCTCGACTTTGCGATGCGACTTCGGGACCTAATAGGGCTGGTG
GCCTACTATCCCAACCTCTCCGGCTCCCCGGCGGCCTACCTCTTGTCCAA
GGGTCATCGCGAGGACGTAGCGGACAAGTTGAACGCGGCCATTCTGGAGG
AGGTGCACGAAAACGGCGAAGGAGAGAAGGAATCCGACAAGGATGATCGA
GATCGCCCCCTTCTAGAAAGAGCCTTGGTTGGCCTGGCGACCATGCACGA
GACATTGCGGGAGGTTAAGAGCGGAGGGCGGGGCGAAAACTTCCGCCTCC
CGGCGCTCTCTCAAGCGCACAAGGCATTCTAGGTAGATAGCAAGGGCAAG
AGGGCAAGAGAGCAGGGTGTGTACATATTGTCTCGAAGGTTCATATAGAG
GAGTGTGGATGTAAAAGACAAAGTAATCGAAAGAAGCACCACAGTTGCAT
GGCACGA
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protein sequence of jgi.p|Nanoce1779_2|606801

>mRNA_9186-protein ID=mRNA_9186-protein|Name=jgi.p|Nanoce1779_2|606801|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
EGMERGVEEKVEVDALIKDYLLVAGYRETLRCFDDVISSSAPAITNPAAT
IAVKQEKTPYGGGSSSSTMDIVGASEEQQPGPNSSCGREHEENASGELSR
DRPSTFAQSLRERTVHLSCSLTFRHELRQMLLSGGGVAVITEHLIKNYPR
LWRQRPIIRFELHSLAYLDLLRQGEGALREALVYAQQKLLPFTLGDTHQL
ETIGGLEGDVDQDSSMNMVMGGKDSNDDIPSPSKGRKMNFRRRRFLRKRE
VDPGGPAERRPRSPEPLRSSSFVSPRLDFAMRLRDLIGLVAYYPNLSGSP
AAYLLSKGHREDVADKLNAAILEEVHENGEGEKESDKDDRDRPLLERALV
GLATMHETLREVKSGGRGENFRLPALSQAHKAF*
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mRNA from alignment at scaffold_36:166967..168773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9186 ID=mRNA_9186|Name=jgi.p|Nanoce1779_2|606801|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp|location=Sequence derived from alignment at scaffold_36:166967..168773- (Nannochloropsis oceanica)
CTTCAGGAGTGGTCGCCTCGCGAGCTTCCTGGTTGGCTGATGCGGGGGAG
GAGGAAGGAGAAGAGGACGAGGACGAGGACGTGGAAGAGGAGGACGAAGA
GGGAGCGGGTAGGCGAGATTATCGTGAGCAAAGTCGGCGCCGGAGCGCGA
GAGCTGGCCAAGATGGCGGAGGGGGAGGCGGACATAGCAGCAGGGAGAGA
CGAGATGCTTCCTTTTCGGAAGGGTCGTCGTCGTCGTCCACTGCCAGCGC
CGGCAACAGCACTGACGTGACCATCCCTTACAACACCAGTCGCCCAGAGC
GCCAACGGCATCAGCACCAGCACCAGCACCAGCACCAGCACGTCGCGAGC
TCTCCACGGGTTCTGGCTGTCGCTAGATCTCCCGAGGTCGCGTGGGACTT
GTTTCCTGTCCTGAGCTTGCACGGCGTCGGGGAATCGGCGCGCGTCAATT
TCGGTCAGGAGCCTTTCTGCTTCGATCTACAGGCGAAGCGCGTGGCAGAC
GAGGCGGAGAGGGAGCGGCGACTTGCAGGGGAGGGAATGGAGCGGGGGGT
AGAGGAAAAGGTGGAAGTGGACGCGCTCATCAAGGACTATTTGCTTGTAG
CGGGCTATCGGGAGACCTTGCGTTGCTTCGATGATGTCATTAGCTCTAGC
GCCCCTGCCATAACGAATCCTGCGGCGACGATTGCTGTGAAACAGGAGAA
AACGCCCTATGGTGGGGGCTCGTCGAGCTCGACGATGGACATCGTGGGAG
CGTCGGAAGAGCAGCAGCCAGGCCCCAACAGTAGCTGCGGCCGCGAGCAC
GAGGAGAATGCAAGCGGCGAATTGAGTAGAGACCGACCAAGTACGTTTGC
TCAAAGCTTGCGGGAGCGGACGGTGCACTTGAGCTGCAGTCTGACGTTTC
GGCATGAGTTGCGGCAGATGCTCCTTTCCGGCGGAGGAGTGGCCGTGATC
ACAGAGCACTTGATCAAGAATTATCCACGATTGTGGCGCCAACGCCCTAT
CATCCGCTTTGAATTGCACAGCCTTGCTTACTTGGATTTGTTGCGGCAGG
GTGAGGGTGCGCTGCGAGAGGCGCTGGTCTATGCGCAACAGAAGCTGTTG
CCCTTTACCTTAGGGGATACCCACCAGTTGGAAACGATAGGGGGCCTGGA
AGGAGACGTCGACCAAGACAGTAGCATGAACATGGTGATGGGTGGAAAGG
ATAGCAATGACGACATTCCGAGTCCGAGCAAGGGCCGTAAGATGAATTTC
CGGCGACGGCGTTTCCTCAGGAAGCGTGAGGTTGACCCAGGGGGGCCAGC
CGAGCGACGGCCCCGGAGCCCGGAGCCTCTTCGCTCCTCATCGTTTGTCT
CGCCTCGCCTCGACTTTGCGATGCGACTTCGGGACCTAATAGGGCTGGTG
GCCTACTATCCCAACCTCTCCGGCTCCCCGGCGGCCTACCTCTTGTCCAA
GGGTCATCGCGAGGACGTAGCGGACAAGTTGAACGCGGCCATTCTGGAGG
AGGTGCACGAAAACGGCGAAGGAGAGAAGGAATCCGACAAGGATGATCGA
GATCGCCCCCTTCTAGAAAGAGCCTTGGTTGGCCTGGCGACCATGCACGA
GACATTGCGGGAGGTTAAGAGCGGAGGGCGGGGCGAAAACTTCCGCCTCC
CGGCGCTCTCTCAAGCGCACAAGGCATTCTAGGTAGATAGCAAGGGCAAG
AGGGCAAGAGAGCAGGGTGTGTACATATTGTCTCGAAGGTTCATATAGAG
GAGTGTGGATGTAAAAGACAAAGTAATCGAAAGAAGCACCACAGTTGCAT
GGCACGA
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Coding sequence (CDS) from alignment at scaffold_36:166967..168773-

>mRNA_9186 ID=mRNA_9186|Name=jgi.p|Nanoce1779_2|606801|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_36:166967..168773- (Nannochloropsis oceanica)
GAGGGAATGGAGCGGGGGGTAGAGGAAAAGGTGGAAGTGGACGCGCTCAT
CAAGGACTATTTGCTTGTAGCGGGCTATCGGGAGACCTTGCGTTGCTTCG
ATGATGTCATTAGCTCTAGCGCCCCTGCCATAACGAATCCTGCGGCGACG
ATTGCTGTGAAACAGGAGAAAACGCCCTATGGTGGGGGCTCGTCGAGCTC
GACGATGGACATCGTGGGAGCGTCGGAAGAGCAGCAGCCAGGCCCCAACA
GTAGCTGCGGCCGCGAGCACGAGGAGAATGCAAGCGGCGAATTGAGTAGA
GACCGACCAAGTACGTTTGCTCAAAGCTTGCGGGAGCGGACGGTGCACTT
GAGCTGCAGTCTGACGTTTCGGCATGAGTTGCGGCAGATGCTCCTTTCCG
GCGGAGGAGTGGCCGTGATCACAGAGCACTTGATCAAGAATTATCCACGA
TTGTGGCGCCAACGCCCTATCATCCGCTTTGAATTGCACAGCCTTGCTTA
CTTGGATTTGTTGCGGCAGGGTGAGGGTGCGCTGCGAGAGGCGCTGGTCT
ATGCGCAACAGAAGCTGTTGCCCTTTACCTTAGGGGATACCCACCAGTTG
GAAACGATAGGGGGCCTGGAAGGAGACGTCGACCAAGACAGTAGCATGAA
CATGGTGATGGGTGGAAAGGATAGCAATGACGACATTCCGAGTCCGAGCA
AGGGCCGTAAGATGAATTTCCGGCGACGGCGTTTCCTCAGGAAGCGTGAG
GTTGACCCAGGGGGGCCAGCCGAGCGACGGCCCCGGAGCCCGGAGCCTCT
TCGCTCCTCATCGTTTGTCTCGCCTCGCCTCGACTTTGCGATGCGACTTC
GGGACCTAATAGGGCTGGTGGCCTACTATCCCAACCTCTCCGGCTCCCCG
GCGGCCTACCTCTTGTCCAAGGGTCATCGCGAGGACGTAGCGGACAAGTT
GAACGCGGCCATTCTGGAGGAGGTGCACGAAAACGGCGAAGGAGAGAAGG
AATCCGACAAGGATGATCGAGATCGCCCCCTTCTAGAAAGAGCCTTGGTT
GGCCTGGCGACCATGCACGAGACATTGCGGGAGGTTAAGAGCGGAGGGCG
GGGCGAAAACTTCCGCCTCCCGGCGCTCTCTCAAGCGCACAAGGCATTCT
AG
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Synonyms
Publications